Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47242 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47188 * 179.97438 * 9 8 7 11 11 O 1.21274 * 119.99891 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99647 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99752 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47293 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.47188 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99992 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99984 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00093 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47148 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47236 * 119.99826 * 19 17 15 22 22 H 1.48495 * 109.47459 * 239.99780 * 19 17 15 23 23 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 24 24 C 1.38145 * 119.94323 * 359.49123 * 23 5 4 25 25 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 26 26 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 27 27 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 28 28 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 29 29 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 31 31 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 32 32 H 1.08999 * 109.47084 * 299.99957 * 8 7 6 33 33 H 1.08996 * 109.47090 * 59.99784 * 8 7 6 34 34 H 1.08999 * 109.47046 * 299.99980 * 9 8 7 35 35 H 1.09006 * 109.46791 * 59.99742 * 9 8 7 36 36 H 0.97004 * 120.00486 * 0.02562 * 12 10 9 37 37 H 1.08999 * 109.47172 * 299.99959 * 13 12 10 38 38 H 1.08998 * 109.47454 * 59.99826 * 13 12 10 39 39 H 1.08999 * 109.47046 * 300.00119 * 14 13 12 40 40 H 1.09004 * 109.47100 * 60.00306 * 14 13 12 41 41 H 0.96998 * 119.99836 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.02769 * 179.72249 * 23 5 4 43 43 H 1.08006 * 119.97076 * 180.25587 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7981 -1.0726 0.0027 9 6 8.4927 -2.4358 0.0027 10 6 9.9867 -2.2383 0.0026 11 8 10.4502 -1.1176 0.0021 12 7 10.8077 -3.3072 0.0021 13 6 12.2601 -3.1152 0.0025 14 6 12.9547 -4.4784 0.0024 15 6 14.4488 -4.2809 0.0022 16 1 14.8615 -3.2829 0.0027 17 6 15.2887 -5.3743 0.0015 18 7 14.7860 -6.5897 0.0015 19 14 17.1405 -5.1295 0.0021 20 1 17.4478 -3.6767 0.0039 21 1 17.7228 -5.7596 1.2143 22 1 17.7233 -5.7577 -1.2107 23 6 3.5787 -1.2007 -0.0033 24 6 2.1973 -1.1980 0.0014 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6558 2.1327 -0.0009 29 1 4.1172 2.1370 0.0001 30 1 5.9884 -1.8297 0.8924 31 1 5.9884 -1.8305 -0.8875 32 1 8.0913 -0.5158 -0.8873 33 1 8.0905 -0.5154 0.8926 34 1 8.1995 -2.9930 0.8925 35 1 8.2001 -2.9926 -0.8875 36 1 10.4370 -4.2036 0.0013 37 1 12.5532 -2.5576 -0.8870 38 1 12.5528 -2.5588 0.8929 39 1 12.6616 -5.0356 0.8921 40 1 12.6622 -5.0352 -0.8879 41 1 15.3769 -7.3589 0.0007 42 1 4.1174 -2.1367 -0.0070 43 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612060920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = -101.886478 kcal Electronic energy + Delta-G solvation = -21181.109767 eV Core-core repulsion = 17803.535677 eV Total energy + Delta-G solvation = -3377.574090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.13993 -40.65923 -38.71462 -36.65975 -34.91634 -34.80817 -32.74893 -31.95700 -31.61314 -28.73574 -27.06236 -26.35890 -24.25141 -23.05771 -22.50357 -21.92457 -21.25933 -19.18290 -18.60137 -17.94179 -17.44164 -16.80212 -16.64499 -16.55009 -16.40233 -16.18840 -15.39814 -15.23811 -14.83545 -14.58928 -14.39464 -14.35957 -14.14104 -14.11105 -13.24388 -13.14494 -13.03492 -12.90454 -12.89519 -12.52417 -12.40783 -12.37253 -12.25456 -12.10627 -11.67632 -11.63368 -11.47720 -11.45398 -10.83759 -10.61637 -10.00607 -9.94440 -8.97695 -8.25367 -6.35579 0.40367 0.47274 1.40073 1.41386 1.54266 1.68622 2.03719 2.37428 2.56825 2.81000 3.09467 3.69076 3.87931 3.91878 3.96402 4.04884 4.11626 4.23521 4.37625 4.42348 4.44453 4.47831 4.50351 4.53851 4.66467 4.73269 4.85241 4.85984 4.90026 5.04939 5.11912 5.16986 5.23794 5.31551 5.39796 5.42953 5.50348 5.57857 5.70955 5.78366 5.91042 6.15841 6.49580 6.65967 6.77805 7.32171 7.33901 8.86498 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.061595 B = 0.001752 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.470156 B =15979.142420 C =16391.957725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C -0.087 4.087 4 C -0.169 4.169 5 C 0.103 3.897 6 O -0.338 6.338 7 C 0.063 3.937 8 C -0.099 4.099 9 C -0.123 4.123 10 C 0.501 3.499 11 O -0.597 6.597 12 N -0.718 5.718 13 C 0.139 3.861 14 C 0.022 3.978 15 C -0.548 4.548 16 H 0.056 0.944 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.212 4.212 24 C -0.088 4.088 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.147 0.853 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.413 0.587 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.266 0.734 42 H 0.144 0.856 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.286 8.671 -0.012 31.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.105 4.105 4 C -0.188 4.188 5 C 0.058 3.942 6 O -0.252 6.252 7 C -0.012 4.012 8 C -0.137 4.137 9 C -0.163 4.163 10 C 0.290 3.710 11 O -0.478 6.478 12 N -0.369 5.369 13 C 0.015 3.985 14 C -0.016 4.016 15 C -0.587 4.587 16 H 0.075 0.925 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.789 3.211 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.230 4.230 24 C -0.106 4.106 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.165 0.835 29 H 0.147 0.853 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.249 0.751 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.162 0.838 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -29.761 9.428 -0.010 31.218 hybrid contribution 1.315 -0.567 -0.008 1.432 sum -28.445 8.861 -0.018 29.793 Atomic orbital electron populations 1.20762 0.89274 1.03536 1.02865 1.20219 0.97679 0.92897 1.02754 1.21134 0.92493 0.99024 0.97858 1.20680 0.94693 0.96474 1.06928 1.19302 0.82240 0.95141 0.97519 1.86035 1.16904 1.33485 1.88817 1.22890 0.91620 0.83461 1.03183 1.21123 0.92136 0.96967 1.03470 1.21526 0.88055 0.99039 1.07669 1.21427 0.90836 0.83883 0.74891 1.90673 1.79237 1.25766 1.52114 1.46167 1.06812 1.09960 1.74000 1.21191 0.78992 0.98770 0.99557 1.19148 0.94554 0.91382 0.96497 1.21509 0.92542 0.93085 1.51521 0.92525 1.25849 1.04018 0.94803 0.94396 1.70057 1.36903 0.98484 1.51023 0.85406 0.79244 0.78513 0.77940 1.19134 1.20177 1.20160 1.21514 0.95990 0.97254 1.08270 1.21177 0.93162 0.98813 0.97468 0.90708 0.90806 0.90851 0.83543 0.85299 0.90026 0.90017 0.92012 0.92003 0.85494 0.85497 0.75058 0.93856 0.93862 0.97120 0.97125 0.92525 0.83809 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 71.24 0.71 -0.15 16 2 C -0.14 -1.85 5.88 -19.85 -0.12 -1.97 16 3 C -0.09 -1.31 9.69 22.25 0.22 -1.09 16 4 C -0.17 -3.22 9.99 22.36 0.22 -3.00 16 5 C 0.10 2.12 6.69 22.50 0.15 2.27 16 6 O -0.34 -7.71 10.14 -92.48 -0.94 -8.65 16 7 C 0.06 1.05 4.74 71.98 0.34 1.40 16 8 C -0.10 -2.11 4.87 30.59 0.15 -1.96 16 9 C -0.12 -2.30 5.70 29.85 0.17 -2.13 16 10 C 0.50 15.74 7.83 87.66 0.69 16.43 16 11 O -0.60 -24.56 15.98 -3.01 -0.05 -24.61 16 12 N -0.72 -23.70 5.56 -463.07 -2.57 -26.27 16 13 C 0.14 5.96 5.61 86.38 0.48 6.44 16 14 C 0.02 1.08 5.09 29.85 0.15 1.23 16 15 C -0.55 -30.68 9.11 25.60 0.23 -30.45 16 16 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 17 C 0.01 0.46 5.46 84.65 0.46 0.92 16 18 N -0.93 -53.82 13.29 21.45 0.28 -53.54 16 19 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 23 C -0.21 -3.47 9.04 22.36 0.20 -3.27 16 24 C -0.09 -1.24 9.69 22.25 0.22 -1.02 16 25 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.07 0.46 8.08 -2.39 -0.02 0.44 16 27 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 28 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 29 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.08 1.06 7.67 -2.39 -0.02 1.04 16 31 H 0.08 1.06 7.65 -2.39 -0.02 1.04 16 32 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 33 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.41 11.10 8.47 -92.71 -0.79 10.32 16 37 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.14 1.77 6.30 -2.91 -0.02 1.75 16 43 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -72.30 364.90 3.24 -69.06 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.20 Total: 14.71 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.28 Total: -16.34 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -2.29 Total: -79.80 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.99 Total: -33.26 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -72.30 3.24 -69.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612060920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.827 kcal (2) G-P(sol) polarization free energy of solvation -72.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds