Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00382 * 2 1 4 4 C 1.53000 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47211 * 65.00042 * 4 3 2 6 6 C 1.46501 * 120.00490 * 90.00004 * 5 4 3 7 7 C 1.50699 * 109.47074 * 93.32729 * 6 5 4 8 8 C 1.38255 * 119.99979 * 3.89582 * 7 6 5 9 9 C 1.38208 * 119.99805 * 179.71866 * 8 7 6 10 10 C 1.38255 * 120.00189 * 0.27927 * 9 8 7 11 11 C 1.50700 * 120.00388 * 179.97438 * 10 9 8 12 12 C 1.38216 * 120.00119 * 359.95575 * 10 9 8 13 13 C 1.38214 * 119.99794 * 184.08189 * 7 6 5 14 14 C 1.50702 * 120.00075 * 0.02562 * 13 7 6 15 15 C 1.34786 * 119.99751 * 270.00073 * 5 4 3 16 16 O 1.21692 * 119.99710 * 174.50318 * 15 5 4 17 17 C 1.46373 * 119.99870 * 354.50116 * 15 5 4 18 18 H 1.08000 * 120.00168 * 359.97438 * 17 15 5 19 19 C 1.40051 * 119.99455 * 180.02562 * 17 15 5 20 20 N 1.30669 * 120.00731 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99654 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47305 * 89.99373 * 21 19 17 23 23 H 1.48495 * 109.47010 * 209.99755 * 21 19 17 24 24 H 1.48502 * 109.46864 * 329.99694 * 21 19 17 25 25 H 1.08999 * 109.46810 * 300.00270 * 1 2 3 26 26 H 1.09006 * 109.46863 * 59.99907 * 1 2 3 27 27 H 1.08992 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46926 * 59.99817 * 3 2 1 29 29 H 1.09007 * 109.46663 * 299.99996 * 3 2 1 30 30 H 1.08999 * 109.47265 * 304.99984 * 4 3 2 31 31 H 1.08998 * 109.46912 * 184.99376 * 4 3 2 32 32 H 1.09002 * 109.46910 * 333.32892 * 6 5 4 33 33 H 1.09003 * 109.47033 * 213.33158 * 6 5 4 34 34 H 1.08004 * 120.00117 * 359.97438 * 8 7 6 35 35 H 1.08003 * 120.00514 * 180.25594 * 9 8 7 36 36 H 1.08990 * 109.47659 * 89.99727 * 11 10 9 37 37 H 1.08998 * 109.47577 * 210.00294 * 11 10 9 38 38 H 1.09006 * 109.46875 * 329.99734 * 11 10 9 39 39 H 1.07998 * 120.00244 * 180.02562 * 12 10 9 40 40 H 1.08996 * 109.47055 * 265.73260 * 14 13 7 41 41 H 1.09001 * 109.47139 * 25.73844 * 14 13 7 42 42 H 1.09002 * 109.46673 * 145.72941 * 14 13 7 43 43 H 0.96995 * 120.00454 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2865 1.4005 -2.4149 7 6 5.7606 1.7132 -2.4289 8 6 6.5949 1.1543 -1.4786 9 6 7.9478 1.4365 -1.4951 10 6 8.4659 2.2822 -2.4584 11 6 9.9409 2.5904 -2.4760 12 6 7.6311 2.8448 -3.4054 13 6 6.2779 2.5617 -3.3895 14 6 5.3676 3.1747 -4.4225 15 6 4.0948 -0.7757 -1.3355 16 8 4.3630 -1.2979 -2.4014 17 6 3.9016 -1.6026 -0.1433 18 1 3.6640 -1.1390 0.8028 19 6 4.0259 -2.9949 -0.2293 20 7 4.3139 -3.5559 -1.3738 21 14 3.7800 -4.0503 1.2923 22 1 2.3497 -4.4337 1.4030 23 1 4.6138 -5.2744 1.1856 24 1 4.1812 -3.2816 2.4979 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8463 0.8899 29 1 1.6886 1.8464 -0.8901 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1764 0.0888 32 1 3.7186 2.3291 -2.3566 33 1 4.0192 0.8679 -3.3276 34 1 6.1901 0.4940 -0.7259 35 1 8.6003 0.9967 -0.7553 36 1 10.4572 1.8607 -3.0997 37 1 10.0985 3.5902 -2.8804 38 1 10.3341 2.5432 -1.4604 39 1 8.0358 3.5051 -4.1581 40 1 5.3714 2.5584 -5.3215 41 1 4.3542 3.2321 -4.0254 42 1 5.7191 4.1769 -4.6674 43 1 4.3996 -4.5202 -1.4334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613883718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -57.275205 kcal Electronic energy + Delta-G solvation = -24038.834093 eV Core-core repulsion = 20663.194493 eV Total energy + Delta-G solvation = -3375.639600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.41927 -37.87219 -36.71415 -34.31246 -33.18608 -32.32762 -31.48352 -29.34925 -27.70798 -26.84334 -26.00045 -25.60925 -23.89267 -22.03598 -21.50315 -19.93068 -18.82360 -16.56576 -16.11003 -15.75790 -15.49417 -15.24507 -14.93450 -14.32859 -14.27657 -14.12662 -13.75416 -13.66542 -13.10653 -13.03945 -12.69525 -12.43544 -12.31193 -12.06254 -11.81541 -11.74217 -11.62580 -11.32269 -11.27422 -11.03005 -10.90277 -10.82891 -10.53154 -10.48976 -10.41860 -10.12192 -9.91291 -9.02945 -8.71179 -8.23903 -7.87640 -7.46778 -7.21320 -6.05041 -4.43867 1.81553 1.91801 3.22165 3.28776 3.31561 4.17864 4.21073 4.37742 4.57875 4.71737 5.09751 5.18955 5.39463 5.45139 5.55585 5.56851 5.61800 5.66465 5.73819 5.77494 5.79730 5.81166 5.83709 5.89545 5.97938 6.00122 6.01187 6.09173 6.13884 6.21508 6.29151 6.43158 6.58697 6.61006 6.67696 6.95093 7.07839 7.21749 7.54434 7.61506 7.67666 7.86774 8.29498 8.49880 9.19352 9.53865 10.72386 10.91583 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.005583 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.347783 B = 5013.652058 C = 6111.219136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.349 6.349 3 C 0.045 3.955 4 C 0.126 3.874 5 N -0.638 5.638 6 C 0.163 3.837 7 C -0.088 4.088 8 C -0.084 4.084 9 C -0.128 4.128 10 C -0.101 4.101 11 C -0.108 4.108 12 C -0.128 4.128 13 C -0.090 4.090 14 C -0.112 4.112 15 C 0.565 3.435 16 O -0.576 6.576 17 C -0.516 4.516 18 H 0.072 0.928 19 C 0.087 3.913 20 N -0.772 5.772 21 Si 0.902 3.098 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.266 1.266 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 13.288 1.175 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.034 4.034 4 C 0.001 3.999 5 N -0.375 5.375 6 C 0.039 3.961 7 C -0.090 4.090 8 C -0.102 4.102 9 C -0.146 4.146 10 C -0.101 4.101 11 C -0.165 4.165 12 C -0.146 4.146 13 C -0.090 4.090 14 C -0.169 4.169 15 C 0.372 3.628 16 O -0.458 6.458 17 C -0.553 4.553 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.402 5.402 21 Si 0.727 3.273 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.190 1.190 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.151 0.849 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.444 12.634 0.477 12.725 hybrid contribution -0.465 -0.289 0.800 0.969 sum 0.979 12.345 1.277 12.449 Atomic orbital electron populations 1.22654 0.83347 1.02139 0.98433 1.88337 1.17365 1.26032 1.94874 1.23072 0.96326 0.85596 0.98379 1.21285 0.90706 0.97788 0.90084 1.48059 1.72431 1.07128 1.09931 1.19918 0.89739 0.93951 0.92482 1.20467 0.97718 0.96009 0.94759 1.21232 0.92667 0.97638 0.98708 1.20999 0.95545 0.98943 0.99100 1.19765 0.95480 0.98525 0.96337 1.20712 0.92453 1.01225 1.02064 1.20681 0.92847 1.01914 0.99160 1.19631 0.94135 0.98381 0.96901 1.20760 0.98771 0.99762 0.97563 1.18171 0.76520 0.78326 0.89829 1.90606 1.53271 1.70851 1.31064 1.20871 1.49123 0.90552 0.94753 0.90968 1.25693 0.92951 0.98450 0.96038 1.70031 1.35058 1.10552 1.24512 0.86472 0.78576 0.79479 0.82756 1.19942 1.20855 1.19039 0.95268 0.95167 0.90154 0.94236 0.94508 0.89119 0.91649 0.91833 0.89808 0.84876 0.86782 0.91704 0.92174 0.91986 0.86963 0.91352 0.91564 0.92167 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.01 8.97 -35.23 -0.32 -7.33 16 3 C 0.05 0.75 6.28 37.16 0.23 0.98 16 4 C 0.13 2.29 5.67 -4.04 -0.02 2.27 16 5 N -0.64 -14.07 1.36 -176.72 -0.24 -14.31 16 6 C 0.16 3.21 4.59 -5.19 -0.02 3.18 16 7 C -0.09 -1.67 5.87 -104.62 -0.61 -2.29 16 8 C -0.08 -1.69 9.14 -39.59 -0.36 -2.05 16 9 C -0.13 -2.23 9.70 -39.59 -0.38 -2.62 16 10 C -0.10 -1.57 5.88 -104.62 -0.62 -2.18 16 11 C -0.11 -1.27 10.01 36.01 0.36 -0.91 16 12 C -0.13 -1.95 9.38 -39.58 -0.37 -2.33 16 13 C -0.09 -1.48 5.88 -104.62 -0.62 -2.09 16 14 C -0.11 -1.47 9.67 36.01 0.35 -1.12 16 15 C 0.56 15.72 6.04 -12.98 -0.08 15.64 16 16 O -0.58 -18.58 14.62 5.20 0.08 -18.51 16 17 C -0.52 -14.34 7.69 -35.63 -0.27 -14.62 16 18 H 0.07 1.88 5.71 -52.49 -0.30 1.58 16 19 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 20 N -0.77 -23.41 11.83 55.55 0.66 -22.76 16 21 Si 0.90 20.63 29.56 -169.99 -5.02 15.61 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.09 1.75 5.89 -51.93 -0.31 1.45 16 31 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 32 H 0.06 1.04 7.19 -51.93 -0.37 0.66 16 33 H 0.08 1.86 7.45 -51.93 -0.39 1.47 16 34 H 0.13 2.97 6.17 -52.48 -0.32 2.65 16 35 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.83 6.38 -51.93 -0.33 0.50 16 42 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 43 H 0.26 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -35.03 352.52 -7.58 -42.61 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.64 Total: 3.54 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.40 Total: -4.17 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.42 Total: -37.07 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.24 Total: -25.83 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.03 -7.58 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613883718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.667 kcal (2) G-P(sol) polarization free energy of solvation -35.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds