Wall clock time and date at job start Tue Mar 31 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00382 * 2 1 4 4 C 1.53000 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47211 * 65.00042 * 4 3 2 6 6 C 1.46501 * 120.00490 * 90.00004 * 5 4 3 7 7 C 1.50699 * 109.47074 * 93.32729 * 6 5 4 8 8 C 1.38255 * 119.99979 * 3.89582 * 7 6 5 9 9 C 1.38208 * 119.99805 * 179.71866 * 8 7 6 10 10 C 1.38255 * 120.00189 * 0.27927 * 9 8 7 11 11 C 1.50700 * 120.00388 * 179.97438 * 10 9 8 12 12 C 1.38216 * 120.00119 * 359.95575 * 10 9 8 13 13 C 1.38214 * 119.99794 * 184.08189 * 7 6 5 14 14 C 1.50702 * 120.00075 * 0.02562 * 13 7 6 15 15 C 1.34786 * 119.99751 * 270.00073 * 5 4 3 16 16 O 1.21692 * 119.99710 * 174.50318 * 15 5 4 17 17 C 1.46373 * 119.99870 * 354.50116 * 15 5 4 18 18 H 1.08000 * 120.00168 * 359.97438 * 17 15 5 19 19 C 1.40051 * 119.99455 * 180.02562 * 17 15 5 20 20 N 1.30669 * 120.00731 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99654 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47305 * 89.99373 * 21 19 17 23 23 H 1.48495 * 109.47010 * 209.99755 * 21 19 17 24 24 H 1.48502 * 109.46864 * 329.99694 * 21 19 17 25 25 H 1.08999 * 109.46810 * 300.00270 * 1 2 3 26 26 H 1.09006 * 109.46863 * 59.99907 * 1 2 3 27 27 H 1.08992 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46926 * 59.99817 * 3 2 1 29 29 H 1.09007 * 109.46663 * 299.99996 * 3 2 1 30 30 H 1.08999 * 109.47265 * 304.99984 * 4 3 2 31 31 H 1.08998 * 109.46912 * 184.99376 * 4 3 2 32 32 H 1.09002 * 109.46910 * 333.32892 * 6 5 4 33 33 H 1.09003 * 109.47033 * 213.33158 * 6 5 4 34 34 H 1.08004 * 120.00117 * 359.97438 * 8 7 6 35 35 H 1.08003 * 120.00514 * 180.25594 * 9 8 7 36 36 H 1.08990 * 109.47659 * 89.99727 * 11 10 9 37 37 H 1.08998 * 109.47577 * 210.00294 * 11 10 9 38 38 H 1.09006 * 109.46875 * 329.99734 * 11 10 9 39 39 H 1.07998 * 120.00244 * 180.02562 * 12 10 9 40 40 H 1.08996 * 109.47055 * 265.73260 * 14 13 7 41 41 H 1.09001 * 109.47139 * 25.73844 * 14 13 7 42 42 H 1.09002 * 109.46673 * 145.72941 * 14 13 7 43 43 H 0.96995 * 120.00454 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2865 1.4005 -2.4149 7 6 5.7606 1.7132 -2.4289 8 6 6.5949 1.1543 -1.4786 9 6 7.9478 1.4365 -1.4951 10 6 8.4659 2.2822 -2.4584 11 6 9.9409 2.5904 -2.4760 12 6 7.6311 2.8448 -3.4054 13 6 6.2779 2.5617 -3.3895 14 6 5.3676 3.1747 -4.4225 15 6 4.0948 -0.7757 -1.3355 16 8 4.3630 -1.2979 -2.4014 17 6 3.9016 -1.6026 -0.1433 18 1 3.6640 -1.1390 0.8028 19 6 4.0259 -2.9949 -0.2293 20 7 4.3139 -3.5559 -1.3738 21 14 3.7800 -4.0503 1.2923 22 1 2.3497 -4.4337 1.4030 23 1 4.6138 -5.2744 1.1856 24 1 4.1812 -3.2816 2.4979 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8463 0.8899 29 1 1.6886 1.8464 -0.8901 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1764 0.0888 32 1 3.7186 2.3291 -2.3566 33 1 4.0192 0.8679 -3.3276 34 1 6.1901 0.4940 -0.7259 35 1 8.6003 0.9967 -0.7553 36 1 10.4572 1.8607 -3.0997 37 1 10.0985 3.5902 -2.8804 38 1 10.3341 2.5432 -1.4604 39 1 8.0358 3.5051 -4.1581 40 1 5.3714 2.5584 -5.3215 41 1 4.3542 3.2321 -4.0254 42 1 5.7191 4.1769 -4.6674 43 1 4.3996 -4.5202 -1.4334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613883718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:39 Heat of formation + Delta-G solvation = -78.839114 kcal Electronic energy + Delta-G solvation = -24039.769174 eV Core-core repulsion = 20663.194493 eV Total energy + Delta-G solvation = -3376.574681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85230 -39.48152 -38.32459 -36.07800 -34.53176 -34.47929 -32.80067 -30.73706 -29.34835 -28.10239 -27.65379 -26.95745 -25.38679 -23.57423 -22.89638 -21.39186 -20.51371 -18.39975 -17.78280 -17.25565 -17.13883 -16.76600 -16.32065 -15.96285 -15.65850 -15.61543 -15.26741 -15.00135 -14.59854 -14.25222 -14.03031 -13.88380 -13.47491 -13.44210 -13.29074 -13.20424 -12.95548 -12.85957 -12.80426 -12.74243 -12.64844 -12.24981 -12.04048 -11.98205 -11.82762 -11.72240 -11.66618 -10.83420 -10.37437 -9.66440 -9.55934 -9.19702 -9.05329 -8.16942 -6.63239 0.49663 0.57589 1.39223 1.41154 1.54464 2.28509 2.56881 2.84814 2.87473 3.18054 3.75455 3.98062 4.00087 4.14190 4.17250 4.31973 4.35541 4.37229 4.50201 4.53789 4.58980 4.61615 4.64174 4.69162 4.74395 4.78886 4.84021 4.88927 4.90254 4.98478 5.01524 5.09469 5.11357 5.33369 5.40500 5.50169 5.65627 5.76044 5.79419 5.93482 6.23707 6.29907 6.48339 6.62320 7.03421 7.55098 8.62715 8.82376 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.005583 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.347783 B = 5013.652058 C = 6111.219136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.047 3.953 4 C 0.122 3.878 5 N -0.636 5.636 6 C 0.169 3.831 7 C -0.114 4.114 8 C -0.112 4.112 9 C -0.144 4.144 10 C -0.097 4.097 11 C -0.106 4.106 12 C -0.128 4.128 13 C -0.092 4.092 14 C -0.110 4.110 15 C 0.559 3.441 16 O -0.634 6.634 17 C -0.532 4.532 18 H 0.085 0.915 19 C 0.029 3.971 20 N -0.828 5.828 21 Si 0.983 3.017 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.250 1.250 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 15.886 2.027 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C -0.031 4.031 4 C -0.001 4.001 5 N -0.371 5.371 6 C 0.046 3.954 7 C -0.115 4.115 8 C -0.131 4.131 9 C -0.162 4.162 10 C -0.097 4.097 11 C -0.162 4.162 12 C -0.146 4.146 13 C -0.092 4.092 14 C -0.167 4.167 15 C 0.365 3.635 16 O -0.521 6.521 17 C -0.568 4.568 18 H 0.103 0.897 19 C -0.185 4.185 20 N -0.459 5.459 21 Si 0.804 3.196 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.173 1.173 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.166 0.834 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.765 15.304 1.363 15.465 hybrid contribution -0.535 -0.961 0.499 1.208 sum 1.229 14.342 1.863 14.515 Atomic orbital electron populations 1.22783 0.81312 1.02425 1.00286 1.88258 1.19855 1.28190 1.95290 1.23111 0.94599 0.84864 1.00517 1.21515 0.92453 0.98663 0.87495 1.47753 1.71431 1.05899 1.11972 1.19950 0.91235 0.94247 0.90010 1.20456 0.97034 0.97830 0.96196 1.21078 0.94279 0.98540 0.99167 1.21168 0.94630 0.99973 1.00444 1.20221 0.97712 0.96815 0.94997 1.20779 0.89510 1.02766 1.03146 1.21139 0.92263 1.01712 0.99447 1.20015 0.95462 0.97300 0.96426 1.20819 0.98373 1.01095 0.96372 1.18360 0.75717 0.80333 0.89049 1.90548 1.55752 1.72949 1.32857 1.21260 1.48961 0.91282 0.95327 0.89741 1.26840 0.91997 1.00024 0.99616 1.70221 1.37058 1.11013 1.27613 0.85233 0.78755 0.77291 0.78315 1.19082 1.20296 1.17321 0.92280 0.94279 0.90814 0.90433 0.93693 0.90860 0.88291 0.88240 0.93274 0.88525 0.86028 0.90981 0.89713 0.91049 0.83412 0.91397 0.91292 0.89051 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -15.85 8.97 -148.98 -1.34 -17.19 16 3 C 0.05 1.49 6.28 71.98 0.45 1.94 16 4 C 0.12 4.41 5.67 86.38 0.49 4.90 16 5 N -0.64 -29.03 1.36 -831.24 -1.13 -30.16 16 6 C 0.17 6.82 4.59 85.63 0.39 7.21 16 7 C -0.11 -4.41 5.87 -19.87 -0.12 -4.53 16 8 C -0.11 -4.69 9.14 22.27 0.20 -4.49 16 9 C -0.14 -5.09 9.70 22.27 0.22 -4.87 16 10 C -0.10 -2.84 5.88 -19.87 -0.12 -2.96 16 11 C -0.11 -2.15 10.01 71.24 0.71 -1.44 16 12 C -0.13 -3.57 9.38 22.27 0.21 -3.36 16 13 C -0.09 -2.88 5.88 -19.86 -0.12 -3.00 16 14 C -0.11 -2.64 9.67 71.24 0.69 -1.95 16 15 C 0.56 32.81 6.04 86.36 0.52 33.33 16 16 O -0.63 -43.70 14.62 -4.32 -0.06 -43.77 16 17 C -0.53 -30.72 7.69 24.83 0.19 -30.53 16 18 H 0.08 4.52 5.71 -2.91 -0.02 4.50 16 19 C 0.03 1.66 5.50 85.31 0.47 2.13 16 20 N -0.83 -52.81 11.83 21.84 0.26 -52.55 16 21 Si 0.98 43.42 29.56 68.60 2.03 45.45 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.34 8.14 -2.38 -0.02 1.33 16 30 H 0.07 2.88 5.89 -2.39 -0.01 2.87 16 31 H 0.10 2.85 8.07 -2.39 -0.02 2.83 16 32 H 0.10 3.16 7.19 -2.39 -0.02 3.14 16 33 H 0.05 2.31 7.45 -2.39 -0.02 2.29 16 34 H 0.10 4.66 6.17 -2.91 -0.02 4.64 16 35 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 38 H 0.07 1.33 8.09 -2.38 -0.02 1.31 16 39 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 41 H 0.07 1.59 6.38 -2.39 -0.02 1.58 16 42 H 0.09 1.62 8.11 -2.39 -0.02 1.60 16 43 H 0.27 15.64 8.29 -92.71 -0.77 14.87 16 Total: -1.00 -82.50 352.52 6.19 -76.31 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.99 Total: 27.40 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.45 Total: -5.50 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -0.87 Total: -82.71 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -1.40 Total: -60.95 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -82.50 6.19 -76.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613883718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.528 kcal (2) G-P(sol) polarization free energy of solvation -82.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds