Wall clock time and date at job start Tue Mar 31 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38170 * 120.02722 * 2 1 4 4 C 1.38247 * 120.05054 * 180.29958 * 3 2 1 5 5 C 1.38284 * 120.10984 * 359.67762 * 4 3 2 6 6 C 1.38119 * 120.06294 * 0.02562 * 5 4 3 7 7 C 1.38712 * 120.02723 * 179.68221 * 2 1 3 8 8 O 1.35900 * 120.05179 * 359.97438 * 7 2 1 9 9 C 1.42905 * 116.99480 * 179.73036 * 8 7 2 10 10 C 1.52998 * 109.46824 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47114 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00037 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00513 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99816 * 359.97438 * 13 11 10 15 15 C 1.46499 * 120.00731 * 179.97438 * 13 11 10 16 16 H 1.09007 * 109.46342 * 0.02562 * 15 13 11 17 17 C 1.52998 * 109.47185 * 120.00078 * 15 13 11 18 18 C 1.50701 * 109.47260 * 240.00565 * 15 13 11 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 13 20 20 C 1.37871 * 119.99694 * 180.27562 * 18 15 13 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 15 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 15 23 23 H 1.48504 * 109.47266 * 60.00049 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47383 * 299.99456 * 22 20 18 26 26 H 1.09003 * 109.47268 * 270.31973 * 1 2 3 27 27 H 1.09007 * 109.47319 * 30.31864 * 1 2 3 28 28 H 1.08996 * 109.47472 * 150.32120 * 1 2 3 29 29 H 1.07995 * 119.97082 * 359.97438 * 3 2 1 30 30 H 1.07995 * 119.93928 * 179.70500 * 4 3 2 31 31 H 1.08006 * 119.96553 * 180.02562 * 5 4 3 32 32 H 1.07994 * 120.03186 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47273 * 59.99989 * 9 8 7 34 34 H 1.09005 * 109.46661 * 299.99773 * 9 8 7 35 35 H 1.08997 * 109.47575 * 59.99721 * 10 9 8 36 36 H 1.09005 * 109.46946 * 299.99145 * 10 9 8 37 37 H 1.09002 * 109.47497 * 270.00376 * 14 13 11 38 38 H 1.09004 * 109.46702 * 29.99819 * 14 13 11 39 39 H 1.08998 * 109.47259 * 149.99398 * 14 13 11 40 40 H 1.09004 * 109.46783 * 180.02562 * 17 15 13 41 41 H 1.09005 * 109.46870 * 300.00240 * 17 15 13 42 42 H 1.08998 * 109.47156 * 60.00179 * 17 15 13 43 43 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5809 1.1968 -0.0063 5 6 4.2751 0.0009 -0.0058 6 6 3.5886 -1.1976 0.0004 7 6 2.2011 -1.2009 0.0067 8 8 1.5232 -2.3788 0.0137 9 6 2.3033 -3.5761 0.0143 10 6 1.3730 -4.7908 0.0220 11 6 2.1956 -6.0535 0.0220 12 8 3.4066 -5.9884 0.0169 13 7 1.5855 -7.2553 0.0287 14 6 0.1226 -7.3341 0.0366 15 6 2.3851 -8.4828 0.0282 16 1 3.4445 -8.2262 0.0224 17 6 2.0656 -9.3001 1.2815 18 6 2.0577 -9.2951 -1.1983 19 1 1.3268 -8.9332 -1.9063 20 6 2.6868 -10.5029 -1.4132 21 7 3.5766 -10.9437 -0.5509 22 14 2.2752 -11.5134 -2.9295 23 1 2.5859 -10.7251 -4.1490 24 1 3.0823 -12.7600 -2.9275 25 1 0.8309 -11.8584 -2.9175 26 1 -0.3634 0.0057 1.0277 27 1 -0.3634 0.8872 -0.5188 28 1 -0.3634 -0.8928 -0.5088 29 1 1.6584 2.1315 -0.0004 30 1 4.1194 2.1329 -0.0111 31 1 5.3551 0.0040 -0.0103 32 1 4.1313 -2.1313 0.0012 33 1 2.9361 -3.5971 0.9015 34 1 2.9282 -3.6031 -0.8784 35 1 0.7405 -4.7697 -0.8654 36 1 0.7479 -4.7640 0.9146 37 1 -0.2349 -7.3505 1.0662 38 1 -0.2907 -6.4664 -0.4776 39 1 -0.1950 -8.2437 -0.4730 40 1 2.6609 -10.2133 1.2812 41 1 2.3025 -8.7126 2.1686 42 1 1.0063 -9.5566 1.2878 43 1 4.0188 -11.7936 -0.7020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705985617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:20 Heat of formation + Delta-G solvation = -57.609361 kcal Electronic energy + Delta-G solvation = -22761.696728 eV Core-core repulsion = 19386.042638 eV Total energy + Delta-G solvation = -3375.654090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32644 -39.17005 -37.49572 -35.42438 -33.10213 -32.90378 -31.70806 -29.96793 -29.14635 -26.85914 -26.15871 -25.27166 -24.65141 -22.00139 -21.64160 -20.63133 -18.50198 -17.94821 -16.60296 -16.42621 -16.24717 -15.85066 -15.56098 -15.21876 -14.74716 -14.52470 -14.12835 -13.71662 -13.50447 -13.21445 -12.91902 -12.75121 -12.49527 -12.40639 -12.20202 -11.90959 -11.74051 -11.56738 -11.46825 -11.40775 -11.07911 -10.88025 -10.79093 -10.73398 -10.67572 -10.29591 -10.19359 -9.24417 -9.04279 -8.94382 -8.45486 -8.19110 -7.65728 -6.10258 -4.18723 1.20465 1.34602 3.01055 3.25435 3.27658 3.31346 3.34238 3.64779 4.04807 4.37887 4.66593 4.71066 4.87995 4.99583 5.05048 5.13815 5.19677 5.20638 5.22545 5.45390 5.52279 5.54159 5.58163 5.72067 5.74492 5.83795 5.88358 6.01751 6.08209 6.26440 6.34093 6.34467 6.41765 6.70592 6.72366 6.79999 7.02821 7.35341 7.37734 7.48979 7.67974 7.97529 8.16053 8.46381 8.77765 8.96820 9.47786 10.95045 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.002861 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.894016 B = 9785.953677 C =10017.291876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.160 4.160 5 C -0.086 4.086 6 C -0.204 4.204 7 C 0.135 3.865 8 O -0.315 6.315 9 C 0.076 3.924 10 C -0.138 4.138 11 C 0.508 3.492 12 O -0.556 6.556 13 N -0.590 5.590 14 C 0.081 3.919 15 C 0.257 3.743 16 H 0.063 0.937 17 C -0.146 4.146 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.011 0.989 42 H 0.030 0.970 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 19.761 2.293 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.123 4.123 3 C -0.105 4.105 4 C -0.178 4.178 5 C -0.104 4.104 6 C -0.223 4.223 7 C 0.089 3.911 8 O -0.229 6.229 9 C 0.001 3.999 10 C -0.178 4.178 11 C 0.294 3.706 12 O -0.436 6.436 13 N -0.320 5.320 14 C -0.063 4.063 15 C 0.158 3.842 16 H 0.081 0.919 17 C -0.205 4.205 18 C -0.567 4.567 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.030 0.970 42 H 0.049 0.951 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.476 19.531 2.327 20.418 hybrid contribution -0.030 -0.763 -0.809 1.113 sum -5.507 18.768 1.518 19.618 Atomic orbital electron populations 1.20598 0.90580 1.02708 1.02196 1.19281 0.96533 0.90382 1.06120 1.20848 0.94129 0.96639 0.98906 1.21012 0.94229 0.97988 1.04597 1.20953 0.99852 0.91859 0.97726 1.21411 0.93208 0.99903 1.07729 1.18830 0.90413 0.85647 0.96170 1.85961 1.36283 1.12408 1.88264 1.22500 0.93373 0.81058 1.02997 1.21521 0.99289 0.91817 1.05174 1.20029 0.88212 0.84733 0.77589 1.90664 1.14256 1.87073 1.51576 1.48227 1.06871 1.06966 1.69980 1.21649 0.81150 1.02902 1.00582 1.18960 0.92477 0.78702 0.94107 0.91871 1.22087 1.00268 1.02403 0.95737 1.21277 1.24410 1.04251 1.06747 0.92254 1.24892 0.94760 0.97378 0.96711 1.69865 1.26249 1.20979 1.35454 0.86544 0.78332 0.79357 0.83081 1.20218 1.21140 1.20210 0.91507 0.91897 0.91035 0.85651 0.86127 0.85881 0.84935 0.91109 0.91041 0.88314 0.88459 0.93710 0.92606 0.89970 0.88779 0.97016 0.95118 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.79 36.01 0.35 -0.63 16 2 C -0.12 -1.40 5.89 -104.47 -0.62 -2.02 16 3 C -0.09 -0.86 9.70 -39.60 -0.38 -1.24 16 4 C -0.16 -1.56 10.04 -39.56 -0.40 -1.96 16 5 C -0.09 -0.93 10.04 -39.61 -0.40 -1.32 16 6 C -0.20 -2.57 9.04 -39.44 -0.36 -2.92 16 7 C 0.14 1.78 6.66 -39.22 -0.26 1.52 16 8 O -0.32 -4.33 9.18 -19.43 -0.18 -4.51 16 9 C 0.08 1.09 4.03 37.16 0.15 1.24 16 10 C -0.14 -2.00 4.62 -27.88 -0.13 -2.13 16 11 C 0.51 10.16 7.67 -10.99 -0.08 10.07 16 12 O -0.56 -13.24 15.31 5.56 0.09 -13.16 16 13 N -0.59 -12.31 2.75 -175.25 -0.48 -12.79 16 14 C 0.08 1.31 9.24 59.85 0.55 1.87 16 15 C 0.26 6.51 2.64 -69.08 -0.18 6.33 16 16 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 17 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 18 C -0.53 -14.12 7.99 -34.44 -0.28 -14.40 16 19 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -24.97 11.31 55.43 0.63 -24.34 16 22 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.47 8.09 -51.92 -0.42 0.05 16 28 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 29 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 32 H 0.13 1.67 6.30 -52.49 -0.33 1.34 16 33 H 0.07 1.04 7.62 -51.93 -0.40 0.65 16 34 H 0.07 1.07 7.62 -51.93 -0.40 0.68 16 35 H 0.10 1.29 7.40 -51.93 -0.38 0.90 16 36 H 0.10 1.23 8.11 -51.93 -0.42 0.81 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 39 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 40 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -30.94 352.03 -8.02 -38.96 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.57 Total: 1.76 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.79 Total: -7.07 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.14 Total: -37.13 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.09 Total: -17.67 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.94 -8.02 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705985617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.648 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds