Wall clock time and date at job start Tue Mar 31 2020 06:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38170 * 120.02722 * 2 1 4 4 C 1.38247 * 120.05054 * 180.29958 * 3 2 1 5 5 C 1.38284 * 120.10984 * 359.67762 * 4 3 2 6 6 C 1.38119 * 120.06294 * 0.02562 * 5 4 3 7 7 C 1.38712 * 120.02723 * 179.68221 * 2 1 3 8 8 O 1.35900 * 120.05179 * 359.97438 * 7 2 1 9 9 C 1.42905 * 116.99480 * 179.73036 * 8 7 2 10 10 C 1.52998 * 109.46824 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47114 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00037 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00513 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99816 * 359.97438 * 13 11 10 15 15 C 1.46499 * 120.00731 * 179.97438 * 13 11 10 16 16 H 1.09007 * 109.46342 * 0.02562 * 15 13 11 17 17 C 1.52998 * 109.47185 * 120.00078 * 15 13 11 18 18 C 1.50701 * 109.47260 * 240.00565 * 15 13 11 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 13 20 20 C 1.37871 * 119.99694 * 180.27562 * 18 15 13 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 15 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 15 23 23 H 1.48504 * 109.47266 * 60.00049 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47383 * 299.99456 * 22 20 18 26 26 H 1.09003 * 109.47268 * 270.31973 * 1 2 3 27 27 H 1.09007 * 109.47319 * 30.31864 * 1 2 3 28 28 H 1.08996 * 109.47472 * 150.32120 * 1 2 3 29 29 H 1.07995 * 119.97082 * 359.97438 * 3 2 1 30 30 H 1.07995 * 119.93928 * 179.70500 * 4 3 2 31 31 H 1.08006 * 119.96553 * 180.02562 * 5 4 3 32 32 H 1.07994 * 120.03186 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47273 * 59.99989 * 9 8 7 34 34 H 1.09005 * 109.46661 * 299.99773 * 9 8 7 35 35 H 1.08997 * 109.47575 * 59.99721 * 10 9 8 36 36 H 1.09005 * 109.46946 * 299.99145 * 10 9 8 37 37 H 1.09002 * 109.47497 * 270.00376 * 14 13 11 38 38 H 1.09004 * 109.46702 * 29.99819 * 14 13 11 39 39 H 1.08998 * 109.47259 * 149.99398 * 14 13 11 40 40 H 1.09004 * 109.46783 * 180.02562 * 17 15 13 41 41 H 1.09005 * 109.46870 * 300.00240 * 17 15 13 42 42 H 1.08998 * 109.47156 * 60.00179 * 17 15 13 43 43 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5809 1.1968 -0.0063 5 6 4.2751 0.0009 -0.0058 6 6 3.5886 -1.1976 0.0004 7 6 2.2011 -1.2009 0.0067 8 8 1.5232 -2.3788 0.0137 9 6 2.3033 -3.5761 0.0143 10 6 1.3730 -4.7908 0.0220 11 6 2.1956 -6.0535 0.0220 12 8 3.4066 -5.9884 0.0169 13 7 1.5855 -7.2553 0.0287 14 6 0.1226 -7.3341 0.0366 15 6 2.3851 -8.4828 0.0282 16 1 3.4445 -8.2262 0.0224 17 6 2.0656 -9.3001 1.2815 18 6 2.0577 -9.2951 -1.1983 19 1 1.3268 -8.9332 -1.9063 20 6 2.6868 -10.5029 -1.4132 21 7 3.5766 -10.9437 -0.5509 22 14 2.2752 -11.5134 -2.9295 23 1 2.5859 -10.7251 -4.1490 24 1 3.0823 -12.7600 -2.9275 25 1 0.8309 -11.8584 -2.9175 26 1 -0.3634 0.0057 1.0277 27 1 -0.3634 0.8872 -0.5188 28 1 -0.3634 -0.8928 -0.5088 29 1 1.6584 2.1315 -0.0004 30 1 4.1194 2.1329 -0.0111 31 1 5.3551 0.0040 -0.0103 32 1 4.1313 -2.1313 0.0012 33 1 2.9361 -3.5971 0.9015 34 1 2.9282 -3.6031 -0.8784 35 1 0.7405 -4.7697 -0.8654 36 1 0.7479 -4.7640 0.9146 37 1 -0.2349 -7.3505 1.0662 38 1 -0.2907 -6.4664 -0.4776 39 1 -0.1950 -8.2437 -0.4730 40 1 2.6609 -10.2133 1.2812 41 1 2.3025 -8.7126 2.1686 42 1 1.0063 -9.5566 1.2878 43 1 4.0188 -11.7936 -0.7020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705985617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:19 Heat of formation + Delta-G solvation = -74.924510 kcal Electronic energy + Delta-G solvation = -22762.447569 eV Core-core repulsion = 19386.042638 eV Total energy + Delta-G solvation = -3376.404931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32876 -40.68452 -38.46050 -37.19054 -34.87705 -33.87046 -33.00773 -31.24323 -30.55078 -27.65828 -27.56513 -27.31809 -25.90298 -23.22217 -22.57714 -22.04706 -19.94204 -19.12393 -18.48756 -17.83322 -17.45363 -17.04275 -16.85646 -16.44116 -16.14790 -16.03693 -15.25366 -14.80134 -14.57798 -14.48243 -14.22708 -14.02114 -13.97739 -13.53735 -13.40467 -13.14081 -13.12091 -12.92328 -12.76612 -12.69566 -12.65265 -12.55272 -12.22000 -12.19064 -12.13242 -11.78260 -11.70362 -11.21715 -10.75148 -10.50217 -9.77126 -9.36400 -9.08367 -8.15733 -6.32556 0.37160 0.48645 1.41211 1.43554 1.50833 1.72706 1.85306 2.38580 2.66287 2.81042 3.12361 3.60909 3.85669 3.86430 3.89278 4.01894 4.21411 4.26862 4.38266 4.42950 4.53080 4.65414 4.68263 4.75290 4.77829 4.79109 4.82268 4.88219 4.89466 4.99591 5.04848 5.07559 5.35597 5.42861 5.46512 5.53976 5.57367 5.60194 5.65608 5.88621 6.01682 6.15118 6.38960 6.75135 6.78246 7.27687 7.43826 8.88566 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.002861 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.894016 B = 9785.953677 C =10017.291876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.132 4.132 3 C -0.087 4.087 4 C -0.156 4.156 5 C -0.097 4.097 6 C -0.224 4.224 7 C 0.104 3.896 8 O -0.316 6.316 9 C 0.085 3.915 10 C -0.120 4.120 11 C 0.499 3.501 12 O -0.606 6.606 13 N -0.598 5.598 14 C 0.076 3.924 15 C 0.261 3.739 16 H 0.009 0.991 17 C -0.132 4.132 18 C -0.541 4.541 19 H 0.063 0.937 20 C 0.015 3.985 21 N -0.918 5.918 22 Si 0.965 3.035 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.261 1.261 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.139 0.861 32 H 0.119 0.881 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.020 0.980 42 H 0.047 0.953 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 21.812 1.825 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.133 4.133 3 C -0.105 4.105 4 C -0.174 4.174 5 C -0.114 4.114 6 C -0.243 4.243 7 C 0.059 3.941 8 O -0.230 6.230 9 C 0.009 3.991 10 C -0.159 4.159 11 C 0.288 3.712 12 O -0.489 6.489 13 N -0.328 5.328 14 C -0.066 4.066 15 C 0.159 3.841 16 H 0.027 0.973 17 C -0.191 4.191 18 C -0.579 4.579 19 H 0.081 0.919 20 C -0.185 4.185 21 N -0.557 5.557 22 Si 0.790 3.210 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.186 1.186 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.157 0.843 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.066 0.934 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.888 21.603 1.865 23.074 hybrid contribution 0.755 -1.280 -0.638 1.617 sum -7.133 20.324 1.226 21.574 Atomic orbital electron populations 1.20633 0.89185 1.03285 1.02804 1.19660 0.97778 0.90184 1.05628 1.21267 0.94404 0.97266 0.97518 1.21411 0.94570 0.98599 1.02830 1.21235 1.00873 0.91752 0.97590 1.21481 0.93461 1.00302 1.09029 1.19158 0.90847 0.85945 0.98119 1.85916 1.35955 1.12314 1.88793 1.22252 0.93209 0.81815 1.01804 1.21391 0.98511 0.88421 1.07596 1.20948 0.88090 0.86032 0.76178 1.90639 1.16825 1.87853 1.53570 1.48227 1.08701 1.05909 1.69957 1.21922 0.78029 1.04096 1.02542 1.18545 0.90481 0.80569 0.94541 0.97342 1.21872 1.00721 1.01052 0.95440 1.21567 1.24412 1.04570 1.07348 0.91883 1.25746 0.94575 0.98607 0.99573 1.70015 1.27170 1.21321 1.37195 0.85507 0.78786 0.77567 0.79147 1.20260 1.20990 1.18591 0.90825 0.89740 0.92028 0.82548 0.83240 0.84346 0.86293 0.92269 0.92617 0.85909 0.85553 0.91358 0.88811 0.91216 0.91423 0.96141 0.93360 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.79 71.24 0.70 -0.99 16 2 C -0.13 -2.79 5.89 -19.77 -0.12 -2.91 16 3 C -0.09 -1.47 9.70 22.26 0.22 -1.25 16 4 C -0.16 -2.66 10.04 22.28 0.22 -2.43 16 5 C -0.10 -2.01 10.04 22.25 0.22 -1.78 16 6 C -0.22 -5.78 9.04 22.36 0.20 -5.58 16 7 C 0.10 2.72 6.66 22.51 0.15 2.87 16 8 O -0.32 -8.54 9.18 -92.42 -0.85 -9.39 16 9 C 0.08 2.47 4.03 71.98 0.29 2.76 16 10 C -0.12 -3.30 4.62 29.85 0.14 -3.16 16 11 C 0.50 20.12 7.67 87.66 0.67 20.79 16 12 O -0.61 -30.36 15.31 -3.04 -0.05 -30.40 16 13 N -0.60 -24.84 2.75 -826.77 -2.28 -27.11 16 14 C 0.08 2.28 9.24 127.77 1.18 3.46 16 15 C 0.26 13.56 2.64 44.24 0.12 13.68 16 16 H 0.01 0.54 6.90 -2.38 -0.02 0.52 16 17 C -0.13 -6.39 8.97 71.98 0.65 -5.74 16 18 C -0.54 -29.28 7.99 25.60 0.20 -29.07 16 19 H 0.06 3.28 7.33 -2.91 -0.02 3.26 16 20 C 0.01 0.80 5.30 84.65 0.45 1.25 16 21 N -0.92 -53.10 11.31 21.45 0.24 -52.86 16 22 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 28 H 0.06 1.13 7.53 -2.39 -0.02 1.12 16 29 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.12 3.26 6.30 -2.91 -0.02 3.25 16 33 H 0.06 1.83 7.62 -2.39 -0.02 1.81 16 34 H 0.06 1.77 7.62 -2.38 -0.02 1.75 16 35 H 0.12 2.85 7.40 -2.39 -0.02 2.83 16 36 H 0.13 2.81 8.11 -2.38 -0.02 2.79 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.09 2.09 6.44 -2.39 -0.02 2.07 16 39 H 0.07 2.28 7.02 -2.39 -0.02 2.27 16 40 H 0.07 3.64 6.06 -2.38 -0.01 3.62 16 41 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.05 2.10 7.67 -2.39 -0.02 2.08 16 43 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -70.54 352.03 5.38 -65.16 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.99 Total: 17.79 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 5.29 Total: -8.10 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.03 Total: -79.97 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.90 Total: -39.79 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -70.54 5.38 -65.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705985617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.764 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds