Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42896 * 114.00383 * 2 1 4 4 H 1.08997 * 109.46945 * 330.00810 * 3 2 1 5 5 C 1.52999 * 109.47152 * 89.99958 * 3 2 1 6 6 C 1.53001 * 109.47725 * 210.00052 * 3 2 1 7 7 C 1.50697 * 109.46646 * 65.00013 * 6 3 2 8 8 O 1.21291 * 120.00442 * 359.97438 * 7 6 3 9 9 N 1.34779 * 120.00017 * 180.02562 * 7 6 3 10 10 C 1.46502 * 119.99938 * 4.73184 * 9 7 6 11 11 C 1.50700 * 109.47139 * 270.00351 * 10 9 7 12 12 H 1.08000 * 119.99916 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00272 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99639 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00223 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47178 * 90.00351 * 15 13 11 17 17 H 1.48504 * 109.47034 * 209.99984 * 15 13 11 18 18 H 1.48498 * 109.46885 * 329.99998 * 15 13 11 19 19 C 1.39932 * 120.00300 * 184.73263 * 9 7 6 20 20 C 1.38869 * 120.06903 * 247.87831 * 19 9 7 21 21 C 1.38106 * 119.92510 * 179.72527 * 20 19 9 22 22 C 1.38283 * 120.07354 * 0.22717 * 21 20 19 23 23 C 1.50706 * 119.92878 * 180.02562 * 22 21 20 24 24 C 1.38279 * 120.14292 * 0.04798 * 22 21 20 25 25 C 1.38118 * 120.06469 * 359.95351 * 24 22 21 26 26 H 1.08996 * 109.47774 * 59.99718 * 1 2 3 27 27 H 1.09002 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47158 * 299.99342 * 1 2 3 29 29 H 1.08997 * 109.47730 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47161 * 300.00698 * 5 3 2 31 31 H 1.09001 * 109.47167 * 60.00345 * 5 3 2 32 32 H 1.08991 * 109.47346 * 305.00111 * 6 3 2 33 33 H 1.08999 * 109.47313 * 184.99907 * 6 3 2 34 34 H 1.09001 * 109.47108 * 30.00068 * 10 9 7 35 35 H 1.08994 * 109.47001 * 150.00263 * 10 9 7 36 36 H 0.96997 * 119.99850 * 179.97438 * 14 13 11 37 37 H 1.07995 * 120.03600 * 359.97438 * 20 19 9 38 38 H 1.08003 * 119.96186 * 180.25373 * 21 20 19 39 39 H 1.08995 * 109.46855 * 90.00313 * 23 22 21 40 40 H 1.09005 * 109.46361 * 210.00016 * 23 22 21 41 41 H 1.08998 * 109.47145 * 329.99652 * 23 22 21 42 42 H 1.07994 * 119.97048 * 179.97438 * 24 22 21 43 43 H 1.08005 * 120.03008 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2632 -0.7212 7 6 3.1415 0.9237 -2.1733 8 8 2.0185 0.7335 -2.5902 9 7 4.1951 0.8302 -3.0085 10 6 5.5579 0.9559 -2.4856 11 6 5.9785 2.4025 -2.5221 12 1 5.2988 3.1532 -2.8977 13 6 7.2309 2.7679 -2.0761 14 7 8.0583 1.8538 -1.6182 15 14 7.7525 4.5610 -2.1220 16 1 7.3782 5.2183 -0.8442 17 1 9.2233 4.6440 -2.3091 18 1 7.0706 5.2460 -3.2494 19 6 3.9875 0.6130 -4.3752 20 6 4.3681 -0.5904 -4.9543 21 6 4.1566 -0.8038 -6.3022 22 6 3.5708 0.1812 -7.0762 23 6 3.3410 -0.0553 -8.5467 24 6 3.1959 1.3828 -6.5038 25 6 3.4047 1.6024 -5.1563 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 2.6606 2.7672 1.4426 30 1 1.2568 1.8013 1.9564 31 1 2.8829 1.0774 1.9563 32 1 3.9931 0.5052 -0.2618 33 1 3.8427 2.2370 -0.6443 34 1 5.5873 0.5949 -1.4575 35 1 6.2381 0.3642 -3.0981 36 1 8.9395 2.1108 -1.3047 37 1 4.8253 -1.3602 -4.3503 38 1 4.4486 -1.7411 -6.7524 39 1 2.3573 -0.5011 -8.6936 40 1 3.3929 0.8941 -9.0797 41 1 4.1067 -0.7296 -8.9303 42 1 2.7390 2.1503 -7.1109 43 1 3.1113 2.5410 -4.7097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726940534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = -81.382658 kcal Electronic energy + Delta-G solvation = -23710.202104 eV Core-core repulsion = 20333.517127 eV Total energy + Delta-G solvation = -3376.684977 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47801 -39.85155 -38.71900 -36.79798 -34.74909 -33.86929 -32.64935 -31.88690 -29.35098 -29.17818 -27.50833 -26.77526 -25.03429 -23.54091 -23.19230 -21.94259 -20.27396 -18.72773 -18.28970 -17.85177 -17.58423 -16.57377 -16.42742 -16.36129 -16.01903 -15.87919 -15.31464 -15.00372 -14.54975 -14.38686 -14.37527 -14.28870 -13.75343 -13.54559 -13.43012 -13.15610 -13.00889 -12.90949 -12.86740 -12.75658 -12.61285 -12.47023 -12.27671 -12.09576 -12.03201 -11.73217 -11.61465 -10.83510 -10.60012 -10.50381 -9.98480 -9.86224 -9.10791 -8.22199 -6.37721 0.36629 0.48247 1.40484 1.42331 1.51873 1.71599 2.20570 2.41407 2.81479 2.90877 3.08056 3.72336 3.88896 3.94960 4.05449 4.08518 4.18425 4.37448 4.48670 4.50555 4.51672 4.58227 4.59867 4.63388 4.78098 4.82891 4.83548 4.89262 4.91014 4.93558 5.02303 5.11661 5.16117 5.20671 5.30657 5.40370 5.57133 5.67346 5.68587 5.82906 6.01164 6.18030 6.34013 6.49078 6.74664 7.27232 7.38080 8.83605 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008371 B = 0.007459 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3343.952474 B = 3752.768802 C = 6415.413137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.403 6.403 3 C 0.104 3.896 4 H 0.058 0.942 5 C -0.165 4.165 6 C -0.128 4.128 7 C 0.518 3.482 8 O -0.574 6.574 9 N -0.567 5.567 10 C 0.257 3.743 11 C -0.545 4.545 12 H 0.052 0.948 13 C 0.024 3.976 14 N -0.919 5.919 15 Si 0.958 3.042 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.274 1.274 19 C 0.131 3.869 20 C -0.140 4.140 21 C -0.110 4.110 22 C -0.099 4.099 23 C -0.104 4.104 24 C -0.114 4.114 25 C -0.127 4.127 26 H 0.030 0.970 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.036 0.964 35 H 0.015 0.985 36 H 0.269 0.731 37 H 0.117 0.883 38 H 0.152 0.848 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.147 0.853 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 -1.716 -3.649 10.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.322 6.322 3 C 0.046 3.954 4 H 0.076 0.924 5 C -0.222 4.222 6 C -0.167 4.167 7 C 0.309 3.691 8 O -0.454 6.454 9 N -0.294 5.294 10 C 0.137 3.863 11 C -0.583 4.583 12 H 0.071 0.929 13 C -0.177 4.177 14 N -0.558 5.558 15 Si 0.783 3.217 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.199 1.199 19 C 0.041 3.959 20 C -0.160 4.160 21 C -0.129 4.129 22 C -0.099 4.099 23 C -0.161 4.161 24 C -0.132 4.132 25 C -0.146 4.146 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.054 0.946 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.135 0.865 38 H 0.170 0.830 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.164 0.836 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.351 -2.011 -3.750 11.192 hybrid contribution 0.652 1.059 0.343 1.290 sum -9.699 -0.953 -3.406 10.324 Atomic orbital electron populations 1.22787 0.80117 1.03120 0.99997 1.87846 1.21091 1.28152 1.95151 1.21861 0.92536 0.84935 0.96089 0.92375 1.22220 1.03185 1.02262 0.94576 1.21833 0.99169 1.05172 0.90558 1.21007 0.83440 0.75413 0.89229 1.90571 1.24019 1.51795 1.79028 1.45918 1.08663 1.69638 1.05187 1.19172 0.76195 0.96552 0.94388 1.21564 1.00311 0.93283 1.43138 0.92928 1.25648 0.96029 1.01709 0.94281 1.70016 1.08458 1.34979 1.42348 0.85556 0.77408 0.79912 0.78857 1.19187 1.20640 1.19876 1.17949 0.99585 0.94256 0.84142 1.21356 1.02007 0.95737 0.96878 1.21174 0.99291 1.00274 0.92114 1.20311 0.98100 0.93394 0.98125 1.20794 1.03076 1.03411 0.88793 1.21157 1.00368 0.98308 0.93369 1.21258 1.00616 0.97765 0.95009 0.95117 0.89079 0.92382 0.90372 0.90698 0.91750 0.88592 0.86726 0.94626 0.96710 0.92185 0.86519 0.83047 0.90061 0.90474 0.90235 0.83573 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 10.82 113.37 1.23 2.20 16 2 O -0.40 -14.02 9.58 -135.19 -1.29 -15.31 16 3 C 0.10 3.39 2.27 30.59 0.07 3.46 16 4 H 0.06 1.93 7.60 -2.39 -0.02 1.91 16 5 C -0.17 -4.15 9.53 71.98 0.69 -3.46 16 6 C -0.13 -4.89 4.08 29.85 0.12 -4.77 16 7 C 0.52 23.20 7.41 87.66 0.65 23.84 16 8 O -0.57 -27.37 15.18 10.73 0.16 -27.21 16 9 N -0.57 -26.26 2.51 -635.30 -1.59 -27.85 16 10 C 0.26 12.90 4.88 85.63 0.42 13.32 16 11 C -0.54 -28.85 9.16 25.60 0.23 -28.61 16 12 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 13 C 0.02 1.26 5.46 84.65 0.46 1.73 16 14 N -0.92 -50.89 13.29 21.45 0.28 -50.60 16 15 Si 0.96 41.73 29.54 68.60 2.03 43.76 16 16 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 C 0.13 5.74 4.74 38.15 0.18 5.92 16 20 C -0.14 -5.42 9.69 22.39 0.22 -5.20 16 21 C -0.11 -3.38 9.69 22.25 0.22 -3.17 16 22 C -0.10 -2.80 5.88 -19.84 -0.12 -2.92 16 23 C -0.10 -1.94 10.01 71.24 0.71 -1.22 16 24 C -0.11 -3.63 9.69 22.25 0.22 -3.41 16 25 C -0.13 -5.11 9.56 22.39 0.21 -4.90 16 26 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.06 1.24 7.87 -2.39 -0.02 1.22 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.57 7.87 -2.39 -0.02 1.56 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 3.70 7.26 -2.39 -0.02 3.68 16 33 H 0.11 4.38 7.91 -2.39 -0.02 4.36 16 34 H 0.04 1.82 6.47 -2.39 -0.02 1.81 16 35 H 0.01 0.80 7.86 -2.39 -0.02 0.78 16 36 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 37 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.25 8.08 -2.38 -0.02 1.23 16 41 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 42 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 43 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -65.89 362.29 6.07 -59.82 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.97 Total: 24.59 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 5.51 Total: -7.20 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -1.31 Total: -78.45 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -1.13 Total: -42.52 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -65.89 6.07 -59.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726940534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.560 kcal (2) G-P(sol) polarization free energy of solvation -65.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds