Wall clock time and date at job start Tue Mar 31 2020 07:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.54003 * 2 1 4 4 C 1.53095 * 109.50584 * 239.89329 * 2 1 3 5 5 N 1.47013 * 109.25967 * 183.21408 * 4 2 1 6 6 C 1.46900 * 111.00481 * 182.39191 * 5 4 2 7 7 C 1.50702 * 109.47036 * 302.41133 * 6 5 4 8 8 C 1.38311 * 119.92915 * 89.99553 * 7 6 5 9 9 C 1.38096 * 120.06782 * 180.02562 * 8 7 6 10 10 C 1.38883 * 119.93001 * 359.97438 * 9 8 7 11 11 O 1.35752 * 120.06733 * 179.72546 * 10 9 8 12 12 C 1.34835 * 116.99867 * 174.45565 * 11 10 9 13 13 H 1.08001 * 119.99908 * 5.03572 * 12 11 10 14 14 C 1.38654 * 119.99862 * 185.04415 * 12 11 10 15 15 N 1.31552 * 120.00015 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00013 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47583 * 89.99816 * 16 14 12 18 18 H 1.48496 * 109.47072 * 210.00091 * 16 14 12 19 19 H 1.48500 * 109.47137 * 329.99829 * 16 14 12 20 20 C 1.38878 * 119.86281 * 0.02562 * 10 9 8 21 21 C 1.38100 * 119.93217 * 359.97321 * 20 10 9 22 22 C 1.47021 * 110.75299 * 58.61309 * 5 4 2 23 23 C 1.53097 * 109.25853 * 301.39073 * 22 5 4 24 24 O 1.43007 * 109.26120 * 56.84051 * 23 22 5 25 25 H 1.09003 * 109.47077 * 299.88782 * 1 2 3 26 26 H 1.08994 * 109.47135 * 59.89478 * 1 2 3 27 27 H 1.09006 * 109.46751 * 179.89331 * 1 2 3 28 28 H 1.09002 * 109.46859 * 180.10713 * 3 2 1 29 29 H 1.09000 * 109.47046 * 300.10846 * 3 2 1 30 30 H 1.08994 * 109.46946 * 60.10853 * 3 2 1 31 31 H 1.09003 * 109.50758 * 63.28198 * 4 2 1 32 32 H 1.08999 * 109.50919 * 303.14992 * 4 2 1 33 33 H 1.08992 * 109.47390 * 182.41223 * 6 5 4 34 34 H 1.08999 * 109.46842 * 62.40572 * 6 5 4 35 35 H 1.08001 * 119.96634 * 0.02562 * 8 7 6 36 36 H 1.07998 * 120.03699 * 179.97438 * 9 8 7 37 37 H 0.96998 * 120.00173 * 179.97438 * 15 14 12 38 38 H 1.08007 * 120.03391 * 179.97438 * 20 10 9 39 39 H 1.08001 * 119.96661 * 180.02562 * 21 20 10 40 40 H 1.09000 * 109.50218 * 61.31863 * 22 5 4 41 41 H 1.08991 * 109.50583 * 181.40588 * 22 5 4 42 42 H 1.09003 * 109.50845 * 176.78458 * 23 22 5 43 43 H 1.09002 * 109.50240 * 296.91080 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4419 0.0000 4 6 2.0412 -0.7239 -1.2484 5 7 3.5093 -0.7884 -1.2045 6 6 4.0447 -1.4268 -2.4144 7 6 3.4566 -2.8071 -2.5562 8 6 2.2802 -2.9869 -3.2611 9 6 1.7385 -4.2504 -3.3924 10 6 2.3766 -5.3411 -2.8162 11 8 1.8436 -6.5836 -2.9388 12 6 2.5703 -7.6117 -2.4561 13 1 3.4911 -7.4199 -1.9254 14 6 2.1353 -8.9152 -2.6413 15 7 2.8445 -9.9184 -2.1708 16 14 0.5424 -9.2469 -3.5588 17 1 0.8283 -9.3998 -5.0080 18 1 -0.0760 -10.4942 -3.0421 19 1 -0.3917 -8.1105 -3.3558 20 6 3.5576 -5.1573 -2.1091 21 6 4.0943 -3.8913 -1.9813 22 6 3.9640 -1.4883 0.0057 23 6 3.4335 -0.7568 1.2416 24 8 2.0077 -0.6762 1.1661 25 1 -0.3633 0.5121 0.8910 26 1 -0.3633 0.5154 -0.8890 27 1 -0.3633 -1.0277 -0.0019 28 1 3.1318 1.4406 -0.0019 29 1 1.6775 1.9567 -0.8890 30 1 1.6806 1.9556 0.8909 31 1 1.7273 -0.1794 -2.1390 32 1 1.6332 -1.7342 -1.2760 33 1 5.1293 -1.5002 -2.3368 34 1 3.7824 -0.8287 -3.2871 35 1 1.7848 -2.1383 -3.7093 36 1 0.8198 -4.3901 -3.9425 37 1 2.5401 -10.8302 -2.3000 38 1 4.0559 -6.0035 -1.6595 39 1 5.0130 -3.7477 -1.4319 40 1 3.5867 -2.5109 -0.0018 41 1 5.0536 -1.5026 0.0302 42 1 3.7202 -1.3041 2.1396 43 1 3.8534 0.2484 1.2776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731211572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:00 Heat of formation + Delta-G solvation = -42.144433 kcal Electronic energy + Delta-G solvation = -23855.131310 eV Core-core repulsion = 20480.147830 eV Total energy + Delta-G solvation = -3374.983480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31003 -39.13204 -37.28305 -35.19377 -33.64103 -32.44151 -30.43027 -30.40185 -28.51619 -27.37198 -26.65195 -25.13327 -23.93774 -22.12953 -21.93223 -20.39724 -19.23983 -17.94911 -17.30475 -16.43476 -16.16939 -15.37744 -15.21686 -14.79165 -14.76300 -14.49597 -14.04414 -13.91935 -13.70912 -13.44396 -13.10082 -12.69366 -12.61109 -12.44503 -12.27572 -12.18448 -12.11424 -11.74682 -11.61415 -11.34464 -11.18912 -11.10419 -11.00420 -10.78377 -10.70956 -10.28669 -10.20196 -9.55605 -9.44491 -8.91410 -8.32509 -8.27735 -7.38614 -6.46597 -4.13497 2.04814 2.10136 3.18579 3.22202 3.36690 3.69751 3.96251 4.19413 4.43779 4.72743 4.79293 4.87936 4.92657 5.02267 5.05966 5.21053 5.25442 5.34618 5.41418 5.50664 5.50982 5.55347 5.61545 5.67726 5.70346 5.78819 5.87314 5.93465 5.97845 6.00766 6.05832 6.13896 6.24272 6.26338 6.49270 6.70320 6.91983 6.96067 7.04670 7.19315 7.23325 7.25458 7.54382 7.74047 7.98180 8.88384 9.49936 10.60915 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.003797 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.690414 B = 7371.985843 C = 7552.989617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.113 3.887 3 C -0.166 4.166 4 C 0.028 3.972 5 N -0.526 5.526 6 C 0.107 3.893 7 C -0.215 4.215 8 C -0.064 4.064 9 C -0.193 4.193 10 C 0.162 3.838 11 O -0.216 6.216 12 C -0.391 4.391 13 H 0.106 0.894 14 C 0.064 3.936 15 N -0.878 5.878 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.260 1.260 20 C -0.221 4.221 21 C -0.061 4.061 22 C 0.011 3.989 23 C 0.063 3.937 24 O -0.377 6.377 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.280 0.720 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 20.038 2.647 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.073 3.927 3 C -0.224 4.224 4 C -0.101 4.101 5 N -0.248 5.248 6 C -0.020 4.020 7 C -0.218 4.218 8 C -0.083 4.083 9 C -0.213 4.213 10 C 0.110 3.890 11 O -0.121 6.121 12 C -0.466 4.466 13 H 0.124 0.876 14 C -0.139 4.139 15 N -0.515 5.515 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.184 1.184 20 C -0.241 4.241 21 C -0.080 4.080 22 C -0.117 4.117 23 C -0.014 4.014 24 O -0.296 6.296 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.327 20.123 2.743 20.312 hybrid contribution -0.535 -1.253 -0.560 1.473 sum -0.862 18.871 2.183 19.016 Atomic orbital electron populations 1.21745 0.92509 1.03050 1.02334 1.21560 0.94390 0.91607 0.85099 1.22269 1.02786 0.95629 1.01683 1.22792 0.88493 1.00785 0.98013 1.62712 1.08958 1.50898 1.02281 1.20980 0.98788 0.90089 0.92142 1.19982 0.99166 0.95859 1.06773 1.20499 0.94938 0.95455 0.97435 1.20207 1.02836 0.91173 1.07056 1.19137 0.91453 0.85624 0.92807 1.83574 1.44378 1.12202 1.71909 1.20770 1.06953 0.83301 1.35620 0.87646 1.24470 0.98975 0.93791 0.96686 1.69640 1.38395 0.99360 1.44139 0.86179 0.82645 0.78208 0.79868 1.19833 1.20690 1.18380 1.21272 0.98919 0.97909 1.05963 1.20657 0.98066 0.91930 0.97342 1.22825 1.00609 0.97737 0.90551 1.22637 0.81368 0.99917 0.97442 1.88022 1.20913 1.77875 1.42788 0.91789 0.91111 0.91695 0.91060 0.91951 0.92713 0.90315 0.92441 0.90642 0.90606 0.87164 0.86589 0.90975 0.85005 0.87520 0.92616 0.90120 0.88852 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 2 C 0.11 1.32 1.11 -90.57 -0.10 1.22 16 3 C -0.17 -1.64 8.17 37.16 0.30 -1.34 16 4 C 0.03 0.34 3.54 -3.71 -0.01 0.33 16 5 N -0.53 -6.47 4.30 -235.75 -1.01 -7.48 16 6 C 0.11 1.35 5.58 -4.97 -0.03 1.33 16 7 C -0.22 -3.40 4.02 -104.57 -0.42 -3.82 16 8 C -0.06 -1.06 7.91 -39.61 -0.31 -1.37 16 9 C -0.19 -3.78 9.99 -39.39 -0.39 -4.18 16 10 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 11 O -0.22 -5.70 8.59 0.03 0.00 -5.70 16 12 C -0.39 -11.01 9.95 30.89 0.31 -10.70 16 13 H 0.11 3.03 5.44 -52.49 -0.29 2.75 16 14 C 0.06 1.80 5.49 -17.52 -0.10 1.71 16 15 N -0.88 -25.28 13.96 55.48 0.77 -24.51 16 16 Si 0.91 21.63 28.62 -169.99 -4.86 16.77 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.22 -4.73 9.17 -39.39 -0.36 -5.09 16 21 C -0.06 -1.07 8.02 -39.61 -0.32 -1.39 16 22 C 0.01 0.14 5.12 -3.71 -0.02 0.12 16 23 C 0.06 0.73 6.61 37.21 0.25 0.98 16 24 O -0.38 -5.14 10.28 -35.23 -0.36 -5.50 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.74 6.13 -51.93 -0.32 0.42 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.87 6.22 -51.93 -0.32 0.55 16 33 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 34 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.11 1.51 8.02 -52.49 -0.42 1.09 16 36 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.13 2.98 5.64 -52.48 -0.30 2.69 16 39 H 0.11 1.64 8.03 -52.49 -0.42 1.22 16 40 H 0.06 0.84 6.33 -51.93 -0.33 0.51 16 41 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -29.47 337.17 -8.03 -37.50 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.51 Total: 3.69 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -1.14 Total: -19.85 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: -0.24 Total: -31.99 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.36 Total: -11.20 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.86 Total: 16.77 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.47 -8.03 -37.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731211572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.643 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds