Wall clock time and date at job start Tue Mar 31 2020 07:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.54003 * 2 1 4 4 C 1.53095 * 109.50584 * 239.89329 * 2 1 3 5 5 N 1.47013 * 109.25967 * 183.21408 * 4 2 1 6 6 C 1.46900 * 111.00481 * 182.39191 * 5 4 2 7 7 C 1.50702 * 109.47036 * 302.41133 * 6 5 4 8 8 C 1.38311 * 119.92915 * 89.99553 * 7 6 5 9 9 C 1.38096 * 120.06782 * 180.02562 * 8 7 6 10 10 C 1.38883 * 119.93001 * 359.97438 * 9 8 7 11 11 O 1.35752 * 120.06733 * 179.72546 * 10 9 8 12 12 C 1.34835 * 116.99867 * 174.45565 * 11 10 9 13 13 H 1.08001 * 119.99908 * 5.03572 * 12 11 10 14 14 C 1.38654 * 119.99862 * 185.04415 * 12 11 10 15 15 N 1.31552 * 120.00015 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00013 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47583 * 89.99816 * 16 14 12 18 18 H 1.48496 * 109.47072 * 210.00091 * 16 14 12 19 19 H 1.48500 * 109.47137 * 329.99829 * 16 14 12 20 20 C 1.38878 * 119.86281 * 0.02562 * 10 9 8 21 21 C 1.38100 * 119.93217 * 359.97321 * 20 10 9 22 22 C 1.47021 * 110.75299 * 58.61309 * 5 4 2 23 23 C 1.53097 * 109.25853 * 301.39073 * 22 5 4 24 24 O 1.43007 * 109.26120 * 56.84051 * 23 22 5 25 25 H 1.09003 * 109.47077 * 299.88782 * 1 2 3 26 26 H 1.08994 * 109.47135 * 59.89478 * 1 2 3 27 27 H 1.09006 * 109.46751 * 179.89331 * 1 2 3 28 28 H 1.09002 * 109.46859 * 180.10713 * 3 2 1 29 29 H 1.09000 * 109.47046 * 300.10846 * 3 2 1 30 30 H 1.08994 * 109.46946 * 60.10853 * 3 2 1 31 31 H 1.09003 * 109.50758 * 63.28198 * 4 2 1 32 32 H 1.08999 * 109.50919 * 303.14992 * 4 2 1 33 33 H 1.08992 * 109.47390 * 182.41223 * 6 5 4 34 34 H 1.08999 * 109.46842 * 62.40572 * 6 5 4 35 35 H 1.08001 * 119.96634 * 0.02562 * 8 7 6 36 36 H 1.07998 * 120.03699 * 179.97438 * 9 8 7 37 37 H 0.96998 * 120.00173 * 179.97438 * 15 14 12 38 38 H 1.08007 * 120.03391 * 179.97438 * 20 10 9 39 39 H 1.08001 * 119.96661 * 180.02562 * 21 20 10 40 40 H 1.09000 * 109.50218 * 61.31863 * 22 5 4 41 41 H 1.08991 * 109.50583 * 181.40588 * 22 5 4 42 42 H 1.09003 * 109.50845 * 176.78458 * 23 22 5 43 43 H 1.09002 * 109.50240 * 296.91080 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4419 0.0000 4 6 2.0412 -0.7239 -1.2484 5 7 3.5093 -0.7884 -1.2045 6 6 4.0447 -1.4268 -2.4144 7 6 3.4566 -2.8071 -2.5562 8 6 2.2802 -2.9869 -3.2611 9 6 1.7385 -4.2504 -3.3924 10 6 2.3766 -5.3411 -2.8162 11 8 1.8436 -6.5836 -2.9388 12 6 2.5703 -7.6117 -2.4561 13 1 3.4911 -7.4199 -1.9254 14 6 2.1353 -8.9152 -2.6413 15 7 2.8445 -9.9184 -2.1708 16 14 0.5424 -9.2469 -3.5588 17 1 0.8283 -9.3998 -5.0080 18 1 -0.0760 -10.4942 -3.0421 19 1 -0.3917 -8.1105 -3.3558 20 6 3.5576 -5.1573 -2.1091 21 6 4.0943 -3.8913 -1.9813 22 6 3.9640 -1.4883 0.0057 23 6 3.4335 -0.7568 1.2416 24 8 2.0077 -0.6762 1.1661 25 1 -0.3633 0.5121 0.8910 26 1 -0.3633 0.5154 -0.8890 27 1 -0.3633 -1.0277 -0.0019 28 1 3.1318 1.4406 -0.0019 29 1 1.6775 1.9567 -0.8890 30 1 1.6806 1.9556 0.8909 31 1 1.7273 -0.1794 -2.1390 32 1 1.6332 -1.7342 -1.2760 33 1 5.1293 -1.5002 -2.3368 34 1 3.7824 -0.8287 -3.2871 35 1 1.7848 -2.1383 -3.7093 36 1 0.8198 -4.3901 -3.9425 37 1 2.5401 -10.8302 -2.3000 38 1 4.0559 -6.0035 -1.6595 39 1 5.0130 -3.7477 -1.4319 40 1 3.5867 -2.5109 -0.0018 41 1 5.0536 -1.5026 0.0302 42 1 3.7202 -1.3041 2.1396 43 1 3.8534 0.2484 1.2776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731211572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:59 Heat of formation + Delta-G solvation = -61.051676 kcal Electronic energy + Delta-G solvation = -23855.951190 eV Core-core repulsion = 20480.147830 eV Total energy + Delta-G solvation = -3375.803360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44526 -40.64271 -38.77367 -36.43960 -34.53106 -34.48177 -31.93869 -31.74412 -29.62213 -28.15833 -28.01873 -26.82786 -25.05833 -23.62814 -23.11448 -21.79861 -20.19446 -19.86140 -19.10753 -17.40418 -17.22398 -16.73186 -16.46808 -16.14174 -15.92542 -15.70922 -15.66838 -15.57698 -15.15034 -14.57718 -14.40656 -14.35327 -14.09622 -13.83318 -13.33662 -13.18023 -13.04075 -12.90554 -12.70056 -12.59217 -12.54888 -12.44761 -12.37264 -12.06340 -12.01090 -11.88333 -11.32594 -11.20290 -10.92933 -10.49664 -9.84362 -9.37630 -9.02958 -8.54371 -6.27505 0.50290 0.55885 1.27995 1.32105 1.48445 2.24329 2.66602 2.82746 2.94924 3.06598 3.14360 3.81984 3.93679 3.97391 4.04862 4.08338 4.10646 4.18767 4.31441 4.40538 4.49701 4.50849 4.63852 4.71577 4.74753 4.80132 4.82633 4.87472 4.91527 4.98959 5.00658 5.10405 5.11465 5.18477 5.29142 5.31932 5.46385 5.50227 5.65792 5.73356 5.86121 6.01024 6.03347 6.19001 6.35253 6.79680 7.53321 8.57347 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.003797 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.690414 B = 7371.985843 C = 7552.989617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.106 3.894 3 C -0.158 4.158 4 C 0.027 3.973 5 N -0.514 5.514 6 C 0.108 3.892 7 C -0.187 4.187 8 C -0.055 4.055 9 C -0.195 4.195 10 C 0.120 3.880 11 O -0.245 6.245 12 C -0.402 4.402 13 H 0.079 0.921 14 C 0.011 3.989 15 N -0.922 5.922 16 Si 0.971 3.029 17 H -0.264 1.264 18 H -0.266 1.266 19 H -0.264 1.264 20 C -0.240 4.240 21 C -0.061 4.061 22 C 0.011 3.989 23 C 0.062 3.938 24 O -0.403 6.403 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.027 0.973 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.152 0.848 36 H 0.127 0.873 37 H 0.285 0.715 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.024 0.976 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 23.980 1.616 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.067 3.933 3 C -0.215 4.215 4 C -0.101 4.101 5 N -0.236 5.236 6 C -0.019 4.019 7 C -0.189 4.189 8 C -0.074 4.074 9 C -0.214 4.214 10 C 0.071 3.929 11 O -0.153 6.153 12 C -0.478 4.478 13 H 0.096 0.904 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.793 3.207 17 H -0.189 1.189 18 H -0.190 1.190 19 H -0.189 1.189 20 C -0.259 4.259 21 C -0.080 4.080 22 C -0.118 4.118 23 C -0.015 4.015 24 O -0.323 6.323 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.148 0.852 40 H 0.042 0.958 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.723 24.118 1.717 24.190 hybrid contribution -0.288 -2.099 -0.167 2.126 sum -1.012 22.019 1.550 22.096 Atomic orbital electron populations 1.21780 0.91867 1.02228 1.03709 1.21762 0.95032 0.92466 0.84089 1.22194 1.02434 0.94233 1.02682 1.22843 0.88275 0.99480 0.99502 1.62768 1.08941 1.49983 1.01934 1.21174 0.99649 0.87799 0.93327 1.20532 0.97952 0.97177 1.03240 1.20973 0.94726 0.95273 0.96391 1.20538 1.03079 0.91334 1.06425 1.19699 0.92945 0.85453 0.94775 1.83514 1.44936 1.12893 1.73921 1.20695 1.06625 0.84592 1.35908 0.90375 1.25290 1.02380 0.93384 0.97695 1.69724 1.40399 0.99886 1.46274 0.85209 0.78376 0.78172 0.78898 1.18866 1.19029 1.18887 1.21271 0.99103 0.98904 1.06645 1.20927 0.98909 0.90857 0.97303 1.22868 1.01655 0.96045 0.91215 1.22743 0.80622 1.00799 0.97331 1.88003 1.22022 1.78458 1.43825 0.91340 0.88867 0.93590 0.91416 0.90355 0.92363 0.88178 0.95498 0.89045 0.88063 0.83032 0.85502 0.90483 0.87795 0.85214 0.95815 0.88304 0.88181 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.85 71.98 0.64 -1.90 16 2 C 0.11 2.17 1.11 -10.76 -0.01 2.16 16 3 C -0.16 -2.53 8.17 71.98 0.59 -1.94 16 4 C 0.03 0.59 3.54 86.31 0.31 0.89 16 5 N -0.51 -10.64 4.30 -899.79 -3.87 -14.51 16 6 C 0.11 2.22 5.58 85.56 0.48 2.69 16 7 C -0.19 -5.36 4.02 -19.83 -0.08 -5.43 16 8 C -0.06 -1.64 7.91 22.25 0.18 -1.47 16 9 C -0.19 -7.46 9.99 22.39 0.22 -7.24 16 10 C 0.12 5.74 6.65 22.58 0.15 5.89 16 11 O -0.25 -13.60 8.59 -22.81 -0.20 -13.80 16 12 C -0.40 -24.17 9.95 67.92 0.68 -23.49 16 13 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 14 C 0.01 0.65 5.49 84.83 0.47 1.12 16 15 N -0.92 -55.72 13.96 21.61 0.30 -55.41 16 16 Si 0.97 45.98 28.62 68.60 1.96 47.94 16 17 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 20 C -0.24 -10.74 9.17 22.39 0.21 -10.54 16 21 C -0.06 -2.11 8.02 22.25 0.18 -1.93 16 22 C 0.01 0.24 5.12 86.31 0.44 0.68 16 23 C 0.06 1.29 6.61 72.01 0.48 1.76 16 24 O -0.40 -10.35 10.28 -148.98 -1.53 -11.88 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.07 1.14 6.13 -2.39 -0.01 1.12 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 0.75 6.22 -2.39 -0.01 0.73 16 33 H 0.09 1.70 8.05 -2.39 -0.02 1.68 16 34 H 0.10 1.71 8.08 -2.39 -0.02 1.69 16 35 H 0.15 3.33 8.02 -2.91 -0.02 3.31 16 36 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.29 15.77 8.31 -92.71 -0.77 15.00 16 38 H 0.10 5.18 5.64 -2.91 -0.02 5.16 16 39 H 0.13 3.81 8.03 -2.91 -0.02 3.79 16 40 H 0.02 0.69 6.33 -2.39 -0.02 0.67 16 41 H 0.10 1.84 8.12 -2.39 -0.02 1.82 16 42 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 1.30 6.49 -2.39 -0.02 1.28 16 Total: -1.00 -68.55 337.17 2.57 -65.98 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.99 Total: 20.43 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 4.91 Total: -38.75 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -3.57 Total: -69.92 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.73 Total: -25.68 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.96 Total: 47.94 kcal Total: -68.55 2.57 -65.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731211572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.926 kcal (2) G-P(sol) polarization free energy of solvation -68.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds