Wall clock time and date at job start Tue Mar 31 2020 06:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38652 * 120.11826 * 2 1 4 4 N 1.39702 * 120.00080 * 359.95322 * 3 2 1 5 5 C 1.46502 * 120.00285 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46587 * 35.00460 * 5 4 3 7 7 C 1.52999 * 109.47233 * 275.00522 * 5 4 3 8 8 C 1.53003 * 109.47418 * 155.00090 * 5 4 3 9 9 C 1.52999 * 109.47272 * 300.00408 * 8 5 4 10 10 C 1.52990 * 109.47080 * 180.02562 * 8 5 4 11 11 C 1.39000 * 119.99880 * 180.23924 * 3 2 1 12 12 C 1.38262 * 120.23729 * 359.47799 * 11 3 2 13 13 C 1.37966 * 120.23416 * 0.52248 * 12 11 3 14 14 C 1.39542 * 120.11554 * 179.97438 * 2 1 3 15 15 C 1.47680 * 120.11662 * 0.03919 * 14 2 1 16 16 O 1.21505 * 120.00347 * 6.14421 * 15 14 2 17 17 O 1.34739 * 119.99787 * 186.14356 * 15 14 2 18 18 C 1.34855 * 116.99896 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00150 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99934 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99629 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47152 * 90.00514 * 22 20 18 24 24 H 1.48505 * 109.46573 * 209.99908 * 22 20 18 25 25 H 1.48493 * 109.47194 * 329.99985 * 22 20 18 26 26 H 1.08995 * 109.47051 * 96.49795 * 1 2 3 27 27 H 1.09003 * 109.46883 * 216.50132 * 1 2 3 28 28 H 1.09000 * 109.46924 * 336.50024 * 1 2 3 29 29 H 0.97007 * 120.00235 * 0.02562 * 4 3 2 30 30 H 1.08997 * 109.47214 * 179.97438 * 7 5 4 31 31 H 1.09005 * 109.46874 * 299.99858 * 7 5 4 32 32 H 1.08996 * 109.46974 * 59.99922 * 7 5 4 33 33 H 1.09005 * 109.46861 * 60.00037 * 8 5 4 34 34 H 1.09004 * 109.47284 * 299.99967 * 9 8 5 35 35 H 1.08996 * 109.46974 * 179.97438 * 9 8 5 36 36 H 1.09006 * 109.47440 * 59.99493 * 9 8 5 37 37 H 1.09004 * 109.46913 * 180.02562 * 10 8 5 38 38 H 1.09001 * 109.47323 * 299.99620 * 10 8 5 39 39 H 1.08996 * 109.47535 * 60.00185 * 10 8 5 40 40 H 1.08003 * 119.87785 * 179.74572 * 11 3 2 41 41 H 1.08000 * 119.88438 * 180.25748 * 12 11 3 42 42 H 1.08000 * 119.99614 * 179.76169 * 13 12 11 43 43 H 0.96998 * 119.99349 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2028 1.1993 0.0000 4 7 1.5068 2.4106 -0.0010 5 6 2.2419 3.6779 -0.0016 6 1 3.1525 3.5693 -0.5908 7 6 2.6062 4.0568 1.4353 8 6 1.3671 4.7747 -0.6121 9 6 1.0028 4.3958 -2.0490 10 6 2.1351 6.0979 -0.6133 11 6 3.5928 1.1964 -0.0050 12 6 4.2866 0.0005 0.0008 13 6 3.6041 -1.1986 0.0009 14 6 2.2072 -1.2071 0.0005 15 6 1.4740 -2.4890 0.0002 16 8 0.2643 -2.4970 -0.1131 17 8 2.1466 -3.6498 0.1256 18 6 1.4171 -4.7840 0.1172 19 1 0.3433 -4.7347 0.0128 20 6 2.0465 -6.0149 0.2418 21 7 3.3532 -6.0749 0.3683 22 14 1.0361 -7.5860 0.2294 23 1 0.8999 -8.0760 -1.1658 24 1 1.7161 -8.6183 1.0524 25 1 -0.3108 -7.3127 0.7919 26 1 -0.3633 -0.1163 -1.0210 27 1 -0.3633 -0.8261 0.6113 28 1 -0.3633 0.9424 0.4098 29 1 0.5367 2.4127 -0.0013 30 1 3.1535 4.9994 1.4348 31 1 1.6955 4.1653 2.0245 32 1 3.2294 3.2755 1.8702 33 1 0.4564 4.8832 -0.0230 34 1 1.9135 4.2872 -2.6382 35 1 0.3793 5.1769 -2.4838 36 1 0.4559 3.4529 -2.0486 37 1 1.5117 6.8794 -1.0479 38 1 2.3949 6.3681 0.4102 39 1 3.0455 5.9892 -1.2026 40 1 4.1327 2.1318 -0.0092 41 1 5.3666 0.0049 0.0011 42 1 4.1500 -2.1305 0.0016 43 1 3.7930 -6.9351 0.4550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741747369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:47 Heat of formation + Delta-G solvation = -63.557871 kcal Electronic energy + Delta-G solvation = -23225.664515 eV Core-core repulsion = 19849.752479 eV Total energy + Delta-G solvation = -3375.912037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88345 -38.72256 -37.38548 -35.17668 -33.93893 -32.17123 -32.01500 -30.25048 -28.83584 -27.12768 -26.46167 -25.34432 -23.79153 -22.71461 -20.92072 -20.45921 -19.44672 -17.72779 -17.40561 -16.37889 -15.78110 -15.12618 -14.86825 -14.60739 -14.56556 -14.38205 -14.23952 -13.77508 -13.65851 -13.17590 -12.98875 -12.67063 -12.48951 -12.39448 -12.34341 -11.95340 -11.81526 -11.56745 -11.51248 -11.33599 -11.19603 -11.10299 -10.94861 -10.80282 -10.56855 -10.44300 -10.36433 -9.78727 -9.77466 -8.72178 -8.57471 -8.31784 -7.07176 -6.41732 -4.04432 1.43772 1.98187 3.15621 3.19784 3.25973 3.45787 3.66572 3.98343 4.39907 4.46207 4.63312 4.65987 4.77560 5.10572 5.18765 5.21148 5.23050 5.27084 5.35640 5.38851 5.52838 5.56336 5.58911 5.63187 5.70598 5.78584 5.82794 5.89483 6.01806 6.04615 6.11220 6.16360 6.20351 6.28113 6.55434 6.68046 6.82238 6.99761 7.10221 7.25965 7.44876 7.60235 7.87787 7.97163 8.76343 9.07135 9.89931 10.76218 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035250 B = 0.003254 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.143700 B = 8601.768051 C = 9073.371937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.108 4.108 3 C 0.201 3.799 4 N -0.745 5.745 5 C 0.155 3.845 6 H 0.077 0.923 7 C -0.172 4.172 8 C -0.103 4.103 9 C -0.147 4.147 10 C -0.146 4.146 11 C -0.183 4.183 12 C -0.095 4.095 13 C -0.123 4.123 14 C -0.049 4.049 15 C 0.433 3.567 16 O -0.548 6.548 17 O -0.205 6.205 18 C -0.374 4.374 19 H 0.097 0.903 20 C 0.041 3.959 21 N -0.860 5.860 22 Si 0.944 3.056 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.266 1.266 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.040 0.960 29 H 0.397 0.603 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 21.201 -0.984 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.112 4.112 3 C 0.099 3.901 4 N -0.378 5.378 5 C 0.049 3.951 6 H 0.095 0.905 7 C -0.230 4.230 8 C -0.122 4.122 9 C -0.204 4.204 10 C -0.204 4.204 11 C -0.205 4.205 12 C -0.114 4.114 13 C -0.143 4.143 14 C -0.051 4.051 15 C 0.282 3.718 16 O -0.447 6.447 17 O -0.112 6.112 18 C -0.450 4.450 19 H 0.114 0.886 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.768 3.232 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.191 1.191 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.059 0.941 29 H 0.234 0.766 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.154 0.846 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.135 21.154 -0.984 21.177 hybrid contribution -0.677 -0.770 0.010 1.025 sum -0.543 20.384 -0.974 20.414 Atomic orbital electron populations 1.20831 0.90662 1.01592 1.03079 1.19374 0.96274 0.90141 1.05460 1.17323 0.91081 0.85205 0.96455 1.44689 1.07813 1.01754 1.83522 1.20882 0.95268 0.83183 0.95771 0.90484 1.22369 1.01943 1.01541 0.97184 1.21362 0.98903 0.94752 0.97160 1.21821 1.01639 1.01501 0.95445 1.21859 1.00293 0.96136 1.02108 1.20677 0.91942 0.98295 1.09612 1.20793 0.99373 0.91712 0.99474 1.21355 0.93158 0.98841 1.00956 1.18989 0.93265 0.90649 1.02180 1.20819 0.86045 0.85200 0.79767 1.90554 1.15282 1.87618 1.51277 1.83912 1.39760 1.13066 1.74415 1.21288 0.92362 0.80669 1.50716 0.88551 1.25366 0.96139 0.98614 0.96255 1.69983 1.08077 1.26296 1.45282 0.85663 0.79273 0.79621 0.78599 1.19862 1.20313 1.19059 0.91629 0.88464 0.94139 0.76632 0.91872 0.92529 0.92054 0.90961 0.92609 0.92850 0.92180 0.92491 0.92149 0.92455 0.86440 0.86111 0.84604 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 8.44 36.01 0.30 -1.52 16 2 C -0.11 -1.99 5.93 -103.98 -0.62 -2.60 16 3 C 0.20 3.05 6.61 -83.84 -0.55 2.49 16 4 N -0.75 -8.74 4.46 -52.20 -0.23 -8.98 16 5 C 0.15 1.43 1.85 -67.93 -0.13 1.30 16 6 H 0.08 0.74 6.47 -51.93 -0.34 0.41 16 7 C -0.17 -1.50 9.08 37.16 0.34 -1.16 16 8 C -0.10 -0.78 2.56 -90.62 -0.23 -1.01 16 9 C -0.15 -1.20 9.03 37.16 0.34 -0.87 16 10 C -0.15 -0.91 8.84 37.15 0.33 -0.59 16 11 C -0.18 -2.63 8.86 -39.29 -0.35 -2.98 16 12 C -0.09 -1.49 10.02 -39.67 -0.40 -1.89 16 13 C -0.12 -2.40 9.61 -39.14 -0.38 -2.78 16 14 C -0.05 -1.06 5.87 -105.01 -0.62 -1.67 16 15 C 0.43 11.33 7.77 34.59 0.27 11.60 16 16 O -0.55 -14.85 12.59 -19.27 -0.24 -15.09 16 17 O -0.20 -6.01 9.01 -21.66 -0.20 -6.21 16 18 C -0.37 -11.18 9.65 30.95 0.30 -10.89 16 19 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 20 C 0.04 1.15 5.50 -17.52 -0.10 1.06 16 21 N -0.86 -25.23 13.67 55.49 0.76 -24.47 16 22 Si 0.94 21.40 29.55 -169.99 -5.02 16.37 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.10 1.98 5.85 -51.93 -0.30 1.67 16 28 H 0.04 0.56 6.23 -51.93 -0.32 0.23 16 29 H 0.40 4.43 6.25 -40.82 -0.25 4.17 16 30 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.62 7.73 -51.93 -0.40 0.22 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.12 1.39 6.11 -52.48 -0.32 1.07 16 41 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.14 2.83 7.62 -52.49 -0.40 2.43 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -32.15 346.99 -7.47 -39.61 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.27 Total: 5.04 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.49 Total: -11.50 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.53 Total: -33.45 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.44 Total: -21.30 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.15 -7.47 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741747369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.945 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds