Wall clock time and date at job start Tue Mar 31 2020 06:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38652 * 120.11826 * 2 1 4 4 N 1.39702 * 120.00080 * 359.95322 * 3 2 1 5 5 C 1.46502 * 120.00285 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46587 * 35.00460 * 5 4 3 7 7 C 1.52999 * 109.47233 * 275.00522 * 5 4 3 8 8 C 1.53003 * 109.47418 * 155.00090 * 5 4 3 9 9 C 1.52999 * 109.47272 * 300.00408 * 8 5 4 10 10 C 1.52990 * 109.47080 * 180.02562 * 8 5 4 11 11 C 1.39000 * 119.99880 * 180.23924 * 3 2 1 12 12 C 1.38262 * 120.23729 * 359.47799 * 11 3 2 13 13 C 1.37966 * 120.23416 * 0.52248 * 12 11 3 14 14 C 1.39542 * 120.11554 * 179.97438 * 2 1 3 15 15 C 1.47680 * 120.11662 * 0.03919 * 14 2 1 16 16 O 1.21505 * 120.00347 * 6.14421 * 15 14 2 17 17 O 1.34739 * 119.99787 * 186.14356 * 15 14 2 18 18 C 1.34855 * 116.99896 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00150 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99934 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99629 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47152 * 90.00514 * 22 20 18 24 24 H 1.48505 * 109.46573 * 209.99908 * 22 20 18 25 25 H 1.48493 * 109.47194 * 329.99985 * 22 20 18 26 26 H 1.08995 * 109.47051 * 96.49795 * 1 2 3 27 27 H 1.09003 * 109.46883 * 216.50132 * 1 2 3 28 28 H 1.09000 * 109.46924 * 336.50024 * 1 2 3 29 29 H 0.97007 * 120.00235 * 0.02562 * 4 3 2 30 30 H 1.08997 * 109.47214 * 179.97438 * 7 5 4 31 31 H 1.09005 * 109.46874 * 299.99858 * 7 5 4 32 32 H 1.08996 * 109.46974 * 59.99922 * 7 5 4 33 33 H 1.09005 * 109.46861 * 60.00037 * 8 5 4 34 34 H 1.09004 * 109.47284 * 299.99967 * 9 8 5 35 35 H 1.08996 * 109.46974 * 179.97438 * 9 8 5 36 36 H 1.09006 * 109.47440 * 59.99493 * 9 8 5 37 37 H 1.09004 * 109.46913 * 180.02562 * 10 8 5 38 38 H 1.09001 * 109.47323 * 299.99620 * 10 8 5 39 39 H 1.08996 * 109.47535 * 60.00185 * 10 8 5 40 40 H 1.08003 * 119.87785 * 179.74572 * 11 3 2 41 41 H 1.08000 * 119.88438 * 180.25748 * 12 11 3 42 42 H 1.08000 * 119.99614 * 179.76169 * 13 12 11 43 43 H 0.96998 * 119.99349 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2028 1.1993 0.0000 4 7 1.5068 2.4106 -0.0010 5 6 2.2419 3.6779 -0.0016 6 1 3.1525 3.5693 -0.5908 7 6 2.6062 4.0568 1.4353 8 6 1.3671 4.7747 -0.6121 9 6 1.0028 4.3958 -2.0490 10 6 2.1351 6.0979 -0.6133 11 6 3.5928 1.1964 -0.0050 12 6 4.2866 0.0005 0.0008 13 6 3.6041 -1.1986 0.0009 14 6 2.2072 -1.2071 0.0005 15 6 1.4740 -2.4890 0.0002 16 8 0.2643 -2.4970 -0.1131 17 8 2.1466 -3.6498 0.1256 18 6 1.4171 -4.7840 0.1172 19 1 0.3433 -4.7347 0.0128 20 6 2.0465 -6.0149 0.2418 21 7 3.3532 -6.0749 0.3683 22 14 1.0361 -7.5860 0.2294 23 1 0.8999 -8.0760 -1.1658 24 1 1.7161 -8.6183 1.0524 25 1 -0.3108 -7.3127 0.7919 26 1 -0.3633 -0.1163 -1.0210 27 1 -0.3633 -0.8261 0.6113 28 1 -0.3633 0.9424 0.4098 29 1 0.5367 2.4127 -0.0013 30 1 3.1535 4.9994 1.4348 31 1 1.6955 4.1653 2.0245 32 1 3.2294 3.2755 1.8702 33 1 0.4564 4.8832 -0.0230 34 1 1.9135 4.2872 -2.6382 35 1 0.3793 5.1769 -2.4838 36 1 0.4559 3.4529 -2.0486 37 1 1.5117 6.8794 -1.0479 38 1 2.3949 6.3681 0.4102 39 1 3.0455 5.9892 -1.2026 40 1 4.1327 2.1318 -0.0092 41 1 5.3666 0.0049 0.0011 42 1 4.1500 -2.1305 0.0016 43 1 3.7930 -6.9351 0.4550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741747369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:47 Heat of formation + Delta-G solvation = -81.927407 kcal Electronic energy + Delta-G solvation = -23226.461078 eV Core-core repulsion = 19849.752479 eV Total energy + Delta-G solvation = -3376.708600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45716 -40.33534 -38.47345 -37.23290 -35.01625 -34.29516 -33.40455 -31.25612 -29.92281 -28.20316 -27.53112 -27.32106 -24.95781 -23.98187 -22.20993 -21.81636 -20.58998 -19.85791 -18.99433 -17.48234 -17.39357 -16.63332 -16.46049 -16.30937 -16.23601 -15.53414 -15.21172 -14.94372 -14.76669 -14.38069 -14.31229 -14.11500 -13.66448 -13.49112 -13.27657 -13.20589 -13.06109 -13.02312 -12.79241 -12.61720 -12.37663 -12.30850 -12.18791 -12.14307 -11.91771 -11.78937 -11.74374 -11.34131 -10.93808 -10.72948 -10.67959 -9.77080 -8.56152 -8.25918 -6.33129 -0.08741 0.61150 1.32721 1.37756 1.50802 1.88123 2.09025 2.42568 2.83745 2.86895 3.07526 3.74018 3.93787 3.99966 4.05150 4.11748 4.20970 4.40312 4.45080 4.50879 4.61890 4.64545 4.71287 4.78445 4.82551 4.85343 4.94229 4.97601 4.99189 5.07434 5.09011 5.14727 5.22904 5.27406 5.33739 5.36923 5.47114 5.53280 5.60310 5.67769 5.81095 5.89405 6.46575 6.64118 6.82193 6.88314 7.76393 8.64937 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035250 B = 0.003254 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.143700 B = 8601.768051 C = 9073.371937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.122 4.122 3 C 0.215 3.785 4 N -0.734 5.734 5 C 0.150 3.850 6 H 0.082 0.918 7 C -0.169 4.169 8 C -0.097 4.097 9 C -0.147 4.147 10 C -0.144 4.144 11 C -0.165 4.165 12 C -0.080 4.080 13 C -0.144 4.144 14 C -0.085 4.085 15 C 0.430 3.570 16 O -0.567 6.567 17 O -0.235 6.235 18 C -0.420 4.420 19 H 0.083 0.917 20 C -0.005 4.005 21 N -0.899 5.899 22 Si 1.020 2.980 23 H -0.259 1.259 24 H -0.258 1.258 25 H -0.263 1.263 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.401 0.599 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.109 0.891 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 24.058 -0.957 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C 0.111 3.889 4 N -0.365 5.365 5 C 0.046 3.954 6 H 0.100 0.900 7 C -0.227 4.227 8 C -0.116 4.116 9 C -0.205 4.205 10 C -0.202 4.202 11 C -0.187 4.187 12 C -0.099 4.099 13 C -0.164 4.164 14 C -0.087 4.087 15 C 0.280 3.720 16 O -0.466 6.466 17 O -0.144 6.144 18 C -0.495 4.495 19 H 0.100 0.900 20 C -0.205 4.205 21 N -0.536 5.536 22 Si 0.839 3.161 23 H -0.184 1.184 24 H -0.182 1.182 25 H -0.188 1.188 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.238 0.762 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.127 0.873 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.707 24.075 -0.960 24.104 hybrid contribution -0.845 -1.340 -0.014 1.584 sum -0.138 22.735 -0.973 22.756 Atomic orbital electron populations 1.20691 0.90426 1.02088 1.02185 1.19481 0.96651 0.90317 1.06243 1.17352 0.91634 0.85243 0.94672 1.44862 1.08215 1.01539 1.81901 1.21139 0.95511 0.82165 0.96608 0.89998 1.22342 1.01946 1.02232 0.96198 1.21324 0.98948 0.94816 0.96477 1.21826 1.01503 1.01132 0.96015 1.21848 1.00295 0.95238 1.02780 1.21098 0.91585 0.99292 1.06772 1.21103 1.01044 0.90383 0.97335 1.21235 0.92374 0.99657 1.03162 1.18929 0.94184 0.89273 1.06271 1.21866 0.86346 0.86088 0.77719 1.90518 1.16268 1.88141 1.51673 1.83940 1.40522 1.13930 1.75958 1.21502 0.92166 0.81962 1.53900 0.89965 1.26605 0.97554 1.01751 0.94604 1.70072 1.09837 1.27913 1.45807 0.84597 0.77457 0.74562 0.79528 1.18365 1.18193 1.18755 0.92243 0.92040 0.90388 0.76210 0.89668 0.92689 0.93266 0.90622 0.92885 0.91893 0.93653 0.91858 0.91350 0.92164 0.82509 0.82623 0.87268 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.44 8.44 71.24 0.60 -2.84 16 2 C -0.12 -4.52 5.93 -19.45 -0.12 -4.64 16 3 C 0.21 6.06 6.61 38.17 0.25 6.31 16 4 N -0.73 -15.03 4.46 -319.06 -1.42 -16.45 16 5 C 0.15 2.18 1.85 44.99 0.08 2.27 16 6 H 0.08 1.17 6.47 -2.38 -0.02 1.16 16 7 C -0.17 -2.26 9.08 71.98 0.65 -1.60 16 8 C -0.10 -1.12 2.56 -10.80 -0.03 -1.15 16 9 C -0.15 -2.01 9.03 71.98 0.65 -1.36 16 10 C -0.14 -1.22 8.84 71.98 0.64 -0.59 16 11 C -0.16 -4.19 8.86 22.46 0.20 -3.99 16 12 C -0.08 -2.36 10.02 22.21 0.22 -2.14 16 13 C -0.14 -5.81 9.61 22.56 0.22 -5.60 16 14 C -0.08 -3.84 5.87 -20.12 -0.12 -3.96 16 15 C 0.43 24.20 7.77 70.32 0.55 24.74 16 16 O -0.57 -32.94 12.59 19.82 0.25 -32.69 16 17 O -0.24 -14.89 9.01 11.26 0.10 -14.79 16 18 C -0.42 -26.70 9.65 67.96 0.66 -26.04 16 19 H 0.08 5.27 6.86 -2.91 -0.02 5.25 16 20 C 0.00 -0.28 5.50 84.89 0.47 0.19 16 21 N -0.90 -54.70 13.67 21.64 0.30 -54.40 16 22 Si 1.02 44.75 29.55 68.60 2.03 46.78 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 2.63 5.85 -2.39 -0.01 2.62 16 28 H 0.08 2.07 6.23 -2.39 -0.01 2.06 16 29 H 0.40 7.82 6.25 -92.70 -0.58 7.24 16 30 H 0.08 0.80 6.43 -2.39 -0.02 0.78 16 31 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.05 0.80 7.73 -2.39 -0.02 0.78 16 33 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.04 0.75 7.45 -2.38 -0.02 0.73 16 37 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.07 0.49 6.43 -2.39 -0.02 0.47 16 39 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.16 2.83 6.11 -2.91 -0.02 2.81 16 41 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 42 H 0.11 4.92 7.62 -2.91 -0.02 4.90 16 43 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -75.93 346.99 6.61 -69.32 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.44 Total: 22.64 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 4.92 Total: -20.40 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -1.13 Total: -70.86 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: 0.35 Total: -47.48 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.93 6.61 -69.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741747369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.610 kcal (2) G-P(sol) polarization free energy of solvation -75.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds