Wall clock time and date at job start Tue Mar 31 2020 07:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34507 * 125.79445 * 2 1 4 4 C 1.41386 * 106.84436 * 180.02562 * 3 2 1 5 5 C 1.34514 * 106.83706 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.78591 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47253 * 0.02562 * 6 5 4 8 8 C 1.53003 * 109.46914 * 120.00275 * 6 5 4 9 9 C 1.50700 * 109.47006 * 240.00120 * 6 5 4 10 10 O 1.21281 * 120.00165 * 332.55251 * 9 6 5 11 11 N 1.34776 * 120.00114 * 152.55657 * 9 6 5 12 12 C 1.46498 * 120.00353 * 185.19604 * 11 9 6 13 13 C 1.50695 * 109.47316 * 270.00105 * 12 11 9 14 14 H 1.08006 * 119.99724 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99922 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99859 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00276 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46962 * 90.00045 * 17 15 13 19 19 H 1.48498 * 109.47392 * 210.00045 * 17 15 13 20 20 H 1.48502 * 109.46988 * 330.00277 * 17 15 13 21 21 C 1.46505 * 119.99849 * 5.19567 * 11 9 6 22 22 C 1.52998 * 109.47158 * 93.95978 * 21 11 9 23 23 C 1.53005 * 117.51532 * 116.59114 * 22 21 11 24 24 C 1.53002 * 117.50010 * 185.22271 * 22 21 11 25 25 O 1.34306 * 125.78359 * 180.34312 * 2 1 3 26 26 H 1.09005 * 109.47232 * 89.99633 * 1 2 3 27 27 H 1.08999 * 109.47552 * 210.00310 * 1 2 3 28 28 H 1.09005 * 109.46673 * 330.00237 * 1 2 3 29 29 H 1.08007 * 126.57831 * 0.02562 * 3 2 1 30 30 H 1.08001 * 126.58003 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47249 * 64.66016 * 8 6 5 32 32 H 1.08997 * 109.47046 * 184.66145 * 8 6 5 33 33 H 1.08999 * 109.47042 * 304.66022 * 8 6 5 34 34 H 1.09000 * 109.46473 * 30.00144 * 12 11 9 35 35 H 1.09003 * 109.47017 * 149.99401 * 12 11 9 36 36 H 0.97005 * 119.99692 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.46966 * 333.96431 * 21 11 9 38 38 H 1.08997 * 109.47405 * 213.96240 * 21 11 9 39 39 H 1.09005 * 115.55086 * 330.89235 * 22 21 11 40 40 H 1.09002 * 117.49347 * 214.96727 * 23 22 21 41 41 H 1.08990 * 117.49883 * 359.97438 * 23 22 21 42 42 H 1.09005 * 117.49899 * 359.97438 * 24 22 21 43 43 H 1.08999 * 117.50135 * 145.00044 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5813 -0.7123 -0.0004 6 6 4.7705 -1.6381 -0.0014 7 1 5.6885 -1.0504 -0.0019 8 6 4.7310 -2.5203 1.2481 9 6 4.7293 -2.5073 -1.2317 10 8 3.6663 -2.7708 -1.7528 11 7 5.8738 -2.9921 -1.7529 12 6 5.8459 -3.7414 -3.0115 13 6 5.6538 -5.2073 -2.7193 14 1 5.5622 -5.5468 -1.6981 15 6 5.5962 -6.1149 -3.7555 16 7 5.4291 -7.3943 -3.5004 17 14 5.7555 -5.5277 -5.5216 18 1 7.1860 -5.5396 -5.9201 19 1 4.9854 -6.4302 -6.4147 20 1 5.2218 -4.1465 -5.6340 21 6 7.1458 -2.7698 -1.0608 22 6 7.4515 -3.9669 -0.1585 23 6 8.7001 -4.7918 -0.4773 24 6 8.6816 -3.8735 0.7465 25 8 2.2923 -1.0895 -0.0065 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.9666 2.1204 0.0004 30 1 4.5213 1.2431 -0.0004 31 1 3.8550 -3.1677 1.2082 32 1 5.6327 -3.1313 1.2900 33 1 4.6772 -1.8905 2.1360 34 1 5.0225 -3.3831 -3.6293 35 1 6.7874 -3.5968 -3.5414 36 1 5.3882 -8.0329 -4.2295 37 1 7.0766 -1.8664 -0.4549 38 1 7.9435 -2.6549 -1.7947 39 1 6.5819 -4.4989 0.2276 40 1 8.6519 -5.8663 -0.3009 41 1 9.3037 -4.4819 -1.3303 42 1 9.2734 -2.9594 0.6987 43 1 8.6214 -4.3440 1.7279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742639267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:30 Heat of formation + Delta-G solvation = 5.709366 kcal Electronic energy + Delta-G solvation = -23956.514998 eV Core-core repulsion = 20583.606614 eV Total energy + Delta-G solvation = -3372.908384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.41773 -39.41834 -37.05721 -34.46515 -34.04053 -32.95714 -32.37488 -30.99582 -28.45659 -26.47150 -26.23223 -23.94698 -22.12848 -21.94907 -21.54707 -20.58002 -20.03666 -18.40170 -16.94296 -16.68339 -16.52396 -15.85819 -15.46291 -14.90068 -14.42002 -14.24649 -13.86375 -13.77370 -13.20162 -13.12791 -13.03945 -12.83893 -12.59835 -12.43437 -12.29217 -12.05297 -11.92031 -11.67542 -11.43991 -11.29831 -11.26555 -11.14676 -10.92459 -10.54600 -10.08798 -9.98338 -9.70419 -9.55611 -9.43682 -8.98397 -8.54079 -8.08383 -7.74389 -6.03480 -4.00315 1.89716 2.72498 3.03033 3.28479 3.33268 3.37446 3.41398 3.77275 4.18842 4.43555 4.63772 4.84829 4.92600 5.07449 5.11003 5.15744 5.26453 5.28617 5.30100 5.41235 5.43173 5.45443 5.67811 5.69167 5.79019 5.80327 5.85514 5.87142 5.96439 6.02637 6.06640 6.25106 6.31818 6.35296 6.47663 6.63081 6.68480 6.71165 6.97932 7.33800 7.42030 7.65602 8.21353 8.51940 8.93755 9.02413 9.57300 11.09984 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.005388 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.341803 B = 5195.870761 C = 6508.654153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.017 4.017 3 C -0.218 4.218 4 C -0.215 4.215 5 C 0.020 3.980 6 C -0.034 4.034 7 H 0.115 0.885 8 C -0.144 4.144 9 C 0.511 3.489 10 O -0.521 6.521 11 N -0.589 5.589 12 C 0.218 3.782 13 C -0.515 4.515 14 H 0.077 0.923 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.870 3.130 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.142 3.858 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.191 4.191 25 O -0.148 6.148 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 15.466 10.064 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.237 4.237 4 C -0.234 4.234 5 C -0.031 4.031 6 C -0.055 4.055 7 H 0.133 0.867 8 C -0.202 4.202 9 C 0.297 3.703 10 O -0.397 6.397 11 N -0.321 5.321 12 C 0.097 3.903 13 C -0.554 4.554 14 H 0.095 0.905 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.697 3.303 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.190 1.190 21 C 0.018 3.982 22 C -0.175 4.175 23 C -0.197 4.197 24 C -0.228 4.228 25 O -0.043 6.043 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.361 14.832 9.646 17.697 hybrid contribution 0.317 0.221 -1.037 1.107 sum 0.678 15.053 8.609 17.354 Atomic orbital electron populations 1.20264 0.85502 1.03617 1.03471 1.22446 0.94103 0.84486 1.05805 1.21434 0.92640 0.99037 1.10562 1.21456 0.98188 0.93427 1.10357 1.21736 0.83021 0.93361 1.05001 1.20015 0.93345 0.95517 0.96616 0.86683 1.21819 1.04183 0.99520 0.94628 1.20069 0.84437 0.80967 0.84859 1.90722 1.29041 1.58835 1.61058 1.47880 1.05376 1.53855 1.24940 1.19676 0.96927 0.92611 0.81051 1.21273 1.49476 0.89036 0.95598 0.90519 1.24827 0.94782 0.94761 0.98636 1.69893 1.50388 1.01350 1.32148 0.86939 0.78315 0.79417 0.85612 1.20213 1.21049 1.19002 1.21119 0.86836 0.95542 0.94747 1.22755 0.93049 1.00497 1.01178 1.22864 1.00707 0.97984 0.98136 1.22986 1.02268 1.02140 0.95450 1.84080 1.15927 1.34267 1.70049 0.90192 0.90611 0.89712 0.83861 0.83718 0.91396 0.90370 0.91549 0.94418 0.95770 0.92736 0.90903 0.90642 0.87288 0.88897 0.89043 0.89258 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.42 36.01 0.38 -0.37 16 2 C -0.02 -0.26 7.32 -35.63 -0.26 -0.52 16 3 C -0.22 -2.93 10.81 -39.70 -0.43 -3.36 16 4 C -0.22 -3.05 10.78 -39.70 -0.43 -3.47 16 5 C 0.02 0.33 5.49 -35.63 -0.20 0.14 16 6 C -0.03 -0.52 2.40 -92.92 -0.22 -0.75 16 7 H 0.12 1.41 6.04 -51.93 -0.31 1.09 16 8 C -0.14 -2.01 9.13 37.16 0.34 -1.67 16 9 C 0.51 10.62 6.74 -10.99 -0.07 10.55 16 10 O -0.52 -13.43 15.47 -7.00 -0.11 -13.54 16 11 N -0.59 -11.95 2.46 -175.06 -0.43 -12.38 16 12 C 0.22 5.30 4.23 -5.20 -0.02 5.28 16 13 C -0.52 -14.58 9.76 -34.44 -0.34 -14.92 16 14 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 15 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 17 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 21 C 0.14 2.16 5.53 -4.04 -0.02 2.14 16 22 C -0.16 -2.41 4.60 -90.62 -0.42 -2.82 16 23 C -0.16 -2.42 10.18 -26.72 -0.27 -2.69 16 24 C -0.19 -2.30 10.25 -26.72 -0.27 -2.57 16 25 O -0.15 -2.70 10.03 -6.87 -0.07 -2.76 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.03 5.51 -51.93 -0.29 0.74 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.04 1.01 6.56 -51.93 -0.34 0.67 16 35 H 0.02 0.56 7.36 -51.93 -0.38 0.17 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.07 0.87 5.63 -51.93 -0.29 0.57 16 38 H 0.08 1.09 7.68 -51.93 -0.40 0.69 16 39 H 0.11 1.96 7.13 -51.93 -0.37 1.59 16 40 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.09 1.34 8.03 -51.93 -0.42 0.92 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -35.20 354.80 -8.11 -43.31 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.62 Total: 2.97 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.34 Total: -13.05 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.34 Total: -39.31 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.18 Total: -16.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.20 -8.11 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742639267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.018 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds