Wall clock time and date at job start Tue Mar 31 2020 07:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34507 * 125.79445 * 2 1 4 4 C 1.41386 * 106.84436 * 180.02562 * 3 2 1 5 5 C 1.34514 * 106.83706 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.78591 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47253 * 0.02562 * 6 5 4 8 8 C 1.53003 * 109.46914 * 120.00275 * 6 5 4 9 9 C 1.50700 * 109.47006 * 240.00120 * 6 5 4 10 10 O 1.21281 * 120.00165 * 332.55251 * 9 6 5 11 11 N 1.34776 * 120.00114 * 152.55657 * 9 6 5 12 12 C 1.46498 * 120.00353 * 185.19604 * 11 9 6 13 13 C 1.50695 * 109.47316 * 270.00105 * 12 11 9 14 14 H 1.08006 * 119.99724 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99922 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99859 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00276 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46962 * 90.00045 * 17 15 13 19 19 H 1.48498 * 109.47392 * 210.00045 * 17 15 13 20 20 H 1.48502 * 109.46988 * 330.00277 * 17 15 13 21 21 C 1.46505 * 119.99849 * 5.19567 * 11 9 6 22 22 C 1.52998 * 109.47158 * 93.95978 * 21 11 9 23 23 C 1.53005 * 117.51532 * 116.59114 * 22 21 11 24 24 C 1.53002 * 117.50010 * 185.22271 * 22 21 11 25 25 O 1.34306 * 125.78359 * 180.34312 * 2 1 3 26 26 H 1.09005 * 109.47232 * 89.99633 * 1 2 3 27 27 H 1.08999 * 109.47552 * 210.00310 * 1 2 3 28 28 H 1.09005 * 109.46673 * 330.00237 * 1 2 3 29 29 H 1.08007 * 126.57831 * 0.02562 * 3 2 1 30 30 H 1.08001 * 126.58003 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47249 * 64.66016 * 8 6 5 32 32 H 1.08997 * 109.47046 * 184.66145 * 8 6 5 33 33 H 1.08999 * 109.47042 * 304.66022 * 8 6 5 34 34 H 1.09000 * 109.46473 * 30.00144 * 12 11 9 35 35 H 1.09003 * 109.47017 * 149.99401 * 12 11 9 36 36 H 0.97005 * 119.99692 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.46966 * 333.96431 * 21 11 9 38 38 H 1.08997 * 109.47405 * 213.96240 * 21 11 9 39 39 H 1.09005 * 115.55086 * 330.89235 * 22 21 11 40 40 H 1.09002 * 117.49347 * 214.96727 * 23 22 21 41 41 H 1.08990 * 117.49883 * 359.97438 * 23 22 21 42 42 H 1.09005 * 117.49899 * 359.97438 * 24 22 21 43 43 H 1.08999 * 117.50135 * 145.00044 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5813 -0.7123 -0.0004 6 6 4.7705 -1.6381 -0.0014 7 1 5.6885 -1.0504 -0.0019 8 6 4.7310 -2.5203 1.2481 9 6 4.7293 -2.5073 -1.2317 10 8 3.6663 -2.7708 -1.7528 11 7 5.8738 -2.9921 -1.7529 12 6 5.8459 -3.7414 -3.0115 13 6 5.6538 -5.2073 -2.7193 14 1 5.5622 -5.5468 -1.6981 15 6 5.5962 -6.1149 -3.7555 16 7 5.4291 -7.3943 -3.5004 17 14 5.7555 -5.5277 -5.5216 18 1 7.1860 -5.5396 -5.9201 19 1 4.9854 -6.4302 -6.4147 20 1 5.2218 -4.1465 -5.6340 21 6 7.1458 -2.7698 -1.0608 22 6 7.4515 -3.9669 -0.1585 23 6 8.7001 -4.7918 -0.4773 24 6 8.6816 -3.8735 0.7465 25 8 2.2923 -1.0895 -0.0065 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.9666 2.1204 0.0004 30 1 4.5213 1.2431 -0.0004 31 1 3.8550 -3.1677 1.2082 32 1 5.6327 -3.1313 1.2900 33 1 4.6772 -1.8905 2.1360 34 1 5.0225 -3.3831 -3.6293 35 1 6.7874 -3.5968 -3.5414 36 1 5.3882 -8.0329 -4.2295 37 1 7.0766 -1.8664 -0.4549 38 1 7.9435 -2.6549 -1.7947 39 1 6.5819 -4.4989 0.2276 40 1 8.6519 -5.8663 -0.3009 41 1 9.3037 -4.4819 -1.3303 42 1 9.2734 -2.9594 0.6987 43 1 8.6214 -4.3440 1.7279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742639267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:29 Heat of formation + Delta-G solvation = -15.816621 kcal Electronic energy + Delta-G solvation = -23957.448435 eV Core-core repulsion = 20583.606614 eV Total energy + Delta-G solvation = -3373.841821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.53701 -40.96635 -38.36028 -36.12251 -35.38711 -34.44192 -34.03157 -32.03778 -30.33186 -27.77229 -27.38047 -25.53614 -23.68280 -23.09312 -22.66442 -21.91176 -21.20099 -19.83459 -19.02722 -18.19552 -17.90850 -17.04345 -16.82214 -16.44808 -15.90529 -15.75262 -15.24886 -15.03550 -14.80693 -14.36033 -14.24118 -13.94168 -13.74635 -13.69832 -13.62967 -13.57114 -13.32647 -12.96457 -12.90407 -12.66758 -12.57028 -12.45063 -12.34782 -12.22272 -12.00953 -11.65565 -11.19580 -10.85349 -10.79388 -10.69999 -10.51394 -9.46434 -9.17888 -8.30024 -6.32161 0.76881 1.28979 1.34082 1.43916 1.64517 1.70579 2.09377 2.29918 2.32013 3.03507 3.04642 3.50335 3.59950 3.87669 3.93675 4.03490 4.09106 4.18742 4.22625 4.25715 4.48718 4.56278 4.62340 4.68280 4.70979 4.73469 4.75281 4.85480 4.86756 4.91273 4.91489 4.98102 5.06181 5.15885 5.17657 5.30221 5.38465 5.40805 5.48949 5.65652 5.72029 6.28196 6.34089 6.64368 6.69226 7.24586 7.38974 8.86994 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.005388 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.341803 B = 5195.870761 C = 6508.654153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.219 4.219 4 C -0.201 4.201 5 C -0.021 4.021 6 C -0.019 4.019 7 H 0.159 0.841 8 C -0.138 4.138 9 C 0.501 3.499 10 O -0.586 6.586 11 N -0.592 5.592 12 C 0.225 3.775 13 C -0.514 4.514 14 H 0.032 0.968 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.941 3.059 18 H -0.250 1.250 19 H -0.285 1.285 20 H -0.259 1.259 21 C 0.137 3.863 22 C -0.176 4.176 23 C -0.187 4.187 24 C -0.140 4.140 25 O -0.190 6.190 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.176 0.824 30 H 0.178 0.822 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.012 0.988 35 H 0.049 0.951 36 H 0.265 0.735 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 19.319 10.597 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.238 4.238 4 C -0.220 4.220 5 C -0.071 4.071 6 C -0.040 4.040 7 H 0.176 0.824 8 C -0.195 4.195 9 C 0.290 3.710 10 O -0.466 6.466 11 N -0.322 5.322 12 C 0.103 3.897 13 C -0.552 4.552 14 H 0.050 0.950 15 C -0.188 4.188 16 N -0.588 5.588 17 Si 0.764 3.236 18 H -0.174 1.174 19 H -0.211 1.211 20 H -0.184 1.184 21 C 0.015 3.985 22 C -0.196 4.196 23 C -0.224 4.224 24 C -0.178 4.178 25 O -0.087 6.087 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.193 0.807 30 H 0.196 0.804 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.144 0.856 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.391 18.710 10.218 21.452 hybrid contribution -0.360 -1.014 -1.105 1.542 sum 2.031 17.696 9.113 20.008 Atomic orbital electron populations 1.20453 0.83266 1.05097 1.04069 1.23331 0.95765 0.84302 1.05549 1.21884 0.92254 1.00147 1.09517 1.21916 0.99702 0.92580 1.07811 1.22055 0.82760 0.94550 1.07757 1.20047 0.95263 0.95015 0.93690 0.82401 1.21802 1.02800 0.99454 0.95450 1.21131 0.83416 0.80718 0.85777 1.90678 1.31402 1.61232 1.63265 1.47960 1.07494 1.52738 1.24019 1.19334 0.96816 0.90291 0.83251 1.21444 1.48676 0.91522 0.93602 0.95007 1.25775 0.94516 0.94736 1.03743 1.70057 1.52186 1.02865 1.33735 0.85817 0.79643 0.78828 0.79309 1.17445 1.21116 1.18375 1.21511 0.84696 0.97031 0.95271 1.22606 0.92710 1.00848 1.03409 1.22894 1.01347 0.97240 1.00895 1.23086 0.98459 1.01946 0.94276 1.84055 1.17238 1.36398 1.71054 0.89929 0.90965 0.86389 0.80683 0.80429 0.95060 0.89662 0.88225 0.96983 0.93302 0.92605 0.86423 0.89102 0.90969 0.91506 0.88403 0.85628 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 10.42 71.24 0.74 -0.70 16 2 C -0.04 -1.13 7.32 24.83 0.18 -0.94 16 3 C -0.22 -5.33 10.81 22.19 0.24 -5.09 16 4 C -0.20 -5.10 10.78 22.19 0.24 -4.86 16 5 C -0.02 -0.67 5.49 24.83 0.14 -0.53 16 6 C -0.02 -0.58 2.40 -12.28 -0.03 -0.61 16 7 H 0.16 3.17 6.04 -2.39 -0.01 3.16 16 8 C -0.14 -3.77 9.13 71.98 0.66 -3.11 16 9 C 0.50 21.23 6.74 87.66 0.59 21.82 16 10 O -0.59 -31.91 15.47 8.97 0.14 -31.77 16 11 N -0.59 -24.01 2.46 -826.16 -2.03 -26.04 16 12 C 0.23 11.15 4.23 85.63 0.36 11.51 16 13 C -0.51 -30.46 9.76 25.60 0.25 -30.21 16 14 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 15 C 0.01 0.57 5.47 84.65 0.46 1.03 16 16 N -0.95 -61.00 13.96 21.45 0.30 -60.71 16 17 Si 0.94 45.50 27.47 68.60 1.88 47.39 16 18 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 20 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16 21 C 0.14 3.84 5.53 86.38 0.48 4.32 16 22 C -0.18 -5.31 4.60 -10.79 -0.05 -5.36 16 23 C -0.19 -5.56 10.18 30.60 0.31 -5.25 16 24 C -0.14 -2.92 10.25 30.60 0.31 -2.61 16 25 O -0.19 -7.10 10.03 9.44 0.09 -7.01 16 26 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 30 H 0.18 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 2.17 5.51 -2.39 -0.01 2.16 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.01 0.66 6.56 -2.39 -0.02 0.65 16 35 H 0.05 2.18 7.36 -2.39 -0.02 2.16 16 36 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 37 H 0.12 2.22 5.63 -2.39 -0.01 2.21 16 38 H 0.09 2.30 7.68 -2.39 -0.02 2.29 16 39 H 0.07 2.73 7.13 -2.38 -0.02 2.71 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.10 2.74 8.03 -2.39 -0.02 2.73 16 42 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -85.03 354.80 6.21 -78.81 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.94 Total: 19.92 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 4.89 Total: -20.60 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.73 Total: -86.75 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: 0.23 Total: -38.78 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.39 kcal Total: -85.03 6.21 -78.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742639267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.996 kcal (2) G-P(sol) polarization free energy of solvation -85.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds