Wall clock time and date at job start Tue Mar 31 2020 07:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34523 * 125.79045 * 2 1 4 4 C 1.41384 * 106.84001 * 179.74815 * 3 2 1 5 5 C 1.34511 * 106.83997 * 0.37166 * 4 3 2 6 6 C 1.50705 * 125.78821 * 179.89173 * 5 4 3 7 7 H 1.08997 * 109.46814 * 359.71355 * 6 5 4 8 8 C 1.52996 * 109.46925 * 239.71697 * 6 5 4 9 9 C 1.50697 * 109.47235 * 119.71363 * 6 5 4 10 10 O 1.21283 * 120.00055 * 22.62808 * 9 6 5 11 11 N 1.34772 * 120.00142 * 202.62267 * 9 6 5 12 12 C 1.46500 * 120.00305 * 182.93022 * 11 9 6 13 13 C 1.50694 * 109.47335 * 270.00317 * 12 11 9 14 14 H 1.08006 * 119.99854 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00475 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00416 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99593 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47039 * 90.00503 * 17 15 13 19 19 H 1.48506 * 109.47188 * 209.99948 * 17 15 13 20 20 H 1.48498 * 109.47558 * 330.00069 * 17 15 13 21 21 C 1.46501 * 119.99829 * 2.93288 * 11 9 6 22 22 C 1.53005 * 109.46857 * 265.21127 * 21 11 9 23 23 C 1.53006 * 117.49494 * 242.22851 * 22 21 11 24 24 C 1.53002 * 117.49619 * 173.57148 * 22 21 11 25 25 O 1.34301 * 108.42297 * 359.62486 * 5 4 3 26 26 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47433 * 300.00502 * 1 2 3 28 28 H 1.09009 * 109.46803 * 60.00093 * 1 2 3 29 29 H 1.07994 * 126.57440 * 0.02562 * 3 2 1 30 30 H 1.07997 * 126.57797 * 180.24179 * 4 3 2 31 31 H 1.09000 * 109.47401 * 57.91681 * 8 6 5 32 32 H 1.09007 * 109.47146 * 177.91781 * 8 6 5 33 33 H 1.09000 * 109.47391 * 297.91717 * 8 6 5 34 34 H 1.09000 * 109.46947 * 30.00221 * 12 11 9 35 35 H 1.09001 * 109.47578 * 149.99754 * 12 11 9 36 36 H 0.96995 * 119.99897 * 179.97438 * 16 15 13 37 37 H 1.08994 * 109.47321 * 25.21103 * 21 11 9 38 38 H 1.08996 * 109.47077 * 145.21417 * 21 11 9 39 39 H 1.08994 * 115.55400 * 27.89849 * 22 21 11 40 40 H 1.08998 * 117.50602 * 0.02562 * 23 22 21 41 41 H 1.09004 * 117.49479 * 145.02556 * 23 22 21 42 42 H 1.08994 * 117.49678 * 214.97603 * 24 22 21 43 43 H 1.09003 * 117.49998 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5814 -0.7121 0.0009 6 6 4.7706 -1.6378 0.0020 7 1 5.6885 -1.0500 0.0025 8 6 4.7309 -2.5205 -1.2470 9 6 4.7298 -2.5066 1.2327 10 8 3.6778 -2.6984 1.8050 11 7 5.8622 -3.0705 1.6973 12 6 5.8127 -3.9665 2.8554 13 6 5.9924 -3.1649 4.1187 14 1 6.1301 -2.0951 4.0645 15 6 5.9820 -3.7973 5.3439 16 7 6.1382 -3.0977 6.4465 17 14 5.7445 -5.6478 5.4376 18 1 7.0673 -6.3202 5.3804 19 1 5.0671 -5.9960 6.7125 20 1 4.9102 -6.0984 4.2948 21 6 7.1428 -2.7875 1.0444 22 6 7.4456 -3.8825 0.0195 23 6 8.6985 -4.7318 0.2426 24 6 8.6691 -3.6903 -0.8788 25 8 2.2924 -1.0894 0.0006 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.9665 2.1204 0.0004 30 1 4.5212 1.2433 0.0112 31 1 4.7231 -1.8910 -2.1368 32 1 5.6104 -3.1643 -1.2651 33 1 3.8310 -3.1353 -1.2291 34 1 4.8484 -4.4740 2.8811 35 1 6.6101 -4.7055 2.7774 36 1 6.1305 -3.5426 7.3083 37 1 7.0881 -1.8228 0.5400 38 1 7.9345 -2.7617 1.7931 39 1 6.5750 -4.3742 -0.4143 40 1 9.3069 -4.5109 1.1197 41 1 8.6522 -5.7822 -0.0449 42 1 8.6035 -4.0559 -1.9035 43 1 9.2586 -2.7841 -0.7394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742639270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:33 Heat of formation + Delta-G solvation = 5.329765 kcal Electronic energy + Delta-G solvation = -23856.887324 eV Core-core repulsion = 20483.962480 eV Total energy + Delta-G solvation = -3372.924845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.36008 -39.44829 -37.25483 -34.52564 -34.04793 -32.89918 -32.39612 -30.97577 -28.48665 -26.47359 -26.26707 -24.00274 -22.35630 -21.94730 -21.48658 -20.87617 -19.96370 -18.36348 -16.92938 -16.80433 -16.52266 -15.79843 -15.56325 -14.94591 -14.59842 -14.21875 -14.00983 -13.79577 -13.25978 -13.07592 -13.00605 -12.87236 -12.53997 -12.48736 -12.36357 -11.98474 -11.90314 -11.68868 -11.56871 -11.44329 -11.34441 -11.31745 -10.88647 -10.55803 -10.32701 -10.05573 -9.78398 -9.62793 -9.51441 -8.98493 -8.57251 -8.02333 -7.74534 -6.06664 -4.05001 1.94968 2.79439 3.08114 3.27719 3.35344 3.38291 3.40841 3.68814 3.93481 4.41427 4.64645 4.73061 4.93535 4.94989 5.01100 5.13419 5.19186 5.22377 5.27057 5.29462 5.45274 5.47633 5.50679 5.66514 5.69728 5.72501 5.76233 5.80634 5.94569 5.99629 6.02399 6.07674 6.18505 6.20539 6.33566 6.43478 6.69602 6.75830 6.98875 7.33647 7.46669 7.63360 8.22071 8.48666 8.93249 8.98916 9.53697 11.06858 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.005699 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.775510 B = 4911.806020 C = 6527.997737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.019 4.019 3 C -0.216 4.216 4 C -0.211 4.211 5 C 0.020 3.980 6 C -0.033 4.033 7 H 0.117 0.883 8 C -0.146 4.146 9 C 0.511 3.489 10 O -0.523 6.523 11 N -0.587 5.587 12 C 0.218 3.782 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.873 3.127 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.138 3.862 22 C -0.172 4.172 23 C -0.177 4.177 24 C -0.178 4.178 25 O -0.151 6.151 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 3.484 -18.424 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.235 4.235 4 C -0.231 4.231 5 C -0.032 4.032 6 C -0.055 4.055 7 H 0.135 0.865 8 C -0.203 4.203 9 C 0.296 3.704 10 O -0.398 6.398 11 N -0.318 5.318 12 C 0.098 3.902 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.700 3.300 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.189 1.189 21 C 0.014 3.986 22 C -0.192 4.192 23 C -0.214 4.214 24 C -0.216 4.216 25 O -0.046 6.046 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.442 3.040 -17.874 18.188 hybrid contribution 0.155 -0.656 0.370 0.769 sum -1.288 2.384 -17.504 17.712 Atomic orbital electron populations 1.20253 0.85529 1.03912 1.03084 1.22405 0.94025 0.84463 1.06050 1.21427 0.92648 0.99105 1.10293 1.21470 0.98234 0.93499 1.09865 1.21652 0.82913 0.93410 1.05185 1.19997 0.93654 0.95563 0.96239 0.86529 1.21880 1.03728 0.99651 0.95057 1.20085 0.84394 0.80992 0.84886 1.90718 1.29951 1.60498 1.58667 1.47841 1.05371 1.47428 1.31170 1.19645 0.97602 0.89398 0.83544 1.21325 1.49928 0.96213 0.89050 0.90793 1.24844 0.94505 0.98117 0.95500 1.69897 1.50176 1.35815 0.97761 0.86884 0.78763 0.86164 0.78176 1.20072 1.20969 1.18875 1.21142 0.87525 0.95705 0.94267 1.23013 0.92813 1.02027 1.01311 1.23047 1.01158 0.96608 1.00540 1.22943 1.01574 1.01405 0.95680 1.84030 1.15961 1.34391 1.70257 0.90663 0.89855 0.90090 0.83831 0.83683 0.91426 0.90399 0.91706 0.94325 0.95442 0.92606 0.90690 0.89481 0.87448 0.88348 0.89147 0.89044 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 36.00 0.38 -0.39 16 2 C -0.02 -0.28 7.32 -35.62 -0.26 -0.55 16 3 C -0.22 -3.12 10.81 -39.70 -0.43 -3.55 16 4 C -0.21 -3.25 10.78 -39.70 -0.43 -3.68 16 5 C 0.02 0.34 5.43 -35.62 -0.19 0.14 16 6 C -0.03 -0.52 2.42 -92.92 -0.23 -0.75 16 7 H 0.12 1.53 6.04 -51.93 -0.31 1.21 16 8 C -0.15 -1.84 9.13 37.16 0.34 -1.50 16 9 C 0.51 10.72 6.80 -10.99 -0.07 10.65 16 10 O -0.52 -13.57 15.38 -7.00 -0.11 -13.68 16 11 N -0.59 -12.01 2.46 -175.07 -0.43 -12.44 16 12 C 0.22 5.38 4.23 -5.20 -0.02 5.35 16 13 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 14 H 0.07 2.36 8.06 -52.48 -0.42 1.94 16 15 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 17 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 21 C 0.14 2.11 5.46 -4.04 -0.02 2.09 16 22 C -0.17 -2.18 4.73 -90.61 -0.43 -2.61 16 23 C -0.18 -2.08 10.18 -26.69 -0.27 -2.35 16 24 C -0.18 -1.76 10.25 -26.69 -0.27 -2.04 16 25 O -0.15 -2.78 10.06 -6.84 -0.07 -2.85 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.88 4.75 -51.93 -0.25 0.63 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.04 1.04 6.52 -51.93 -0.34 0.70 16 35 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.08 0.96 5.74 -51.93 -0.30 0.66 16 38 H 0.09 1.42 7.84 -51.93 -0.41 1.01 16 39 H 0.11 1.40 6.53 -51.93 -0.34 1.06 16 40 H 0.10 1.20 8.03 -51.93 -0.42 0.79 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 354.02 15.07 5.34 5.34 Total: -1.00 -35.95 354.02 -8.09 -44.04 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.57 Total: 2.47 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.36 Total: -12.77 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.34 Total: -39.69 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.18 Total: -16.53 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.95 -8.09 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742639270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.369 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds