Wall clock time and date at job start Tue Mar 31 2020 07:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34523 * 125.79045 * 2 1 4 4 C 1.41384 * 106.84001 * 179.74815 * 3 2 1 5 5 C 1.34511 * 106.83997 * 0.37166 * 4 3 2 6 6 C 1.50705 * 125.78821 * 179.89173 * 5 4 3 7 7 H 1.08997 * 109.46814 * 359.71355 * 6 5 4 8 8 C 1.52996 * 109.46925 * 239.71697 * 6 5 4 9 9 C 1.50697 * 109.47235 * 119.71363 * 6 5 4 10 10 O 1.21283 * 120.00055 * 22.62808 * 9 6 5 11 11 N 1.34772 * 120.00142 * 202.62267 * 9 6 5 12 12 C 1.46500 * 120.00305 * 182.93022 * 11 9 6 13 13 C 1.50694 * 109.47335 * 270.00317 * 12 11 9 14 14 H 1.08006 * 119.99854 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00475 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00416 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99593 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47039 * 90.00503 * 17 15 13 19 19 H 1.48506 * 109.47188 * 209.99948 * 17 15 13 20 20 H 1.48498 * 109.47558 * 330.00069 * 17 15 13 21 21 C 1.46501 * 119.99829 * 2.93288 * 11 9 6 22 22 C 1.53005 * 109.46857 * 265.21127 * 21 11 9 23 23 C 1.53006 * 117.49494 * 242.22851 * 22 21 11 24 24 C 1.53002 * 117.49619 * 173.57148 * 22 21 11 25 25 O 1.34301 * 108.42297 * 359.62486 * 5 4 3 26 26 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47433 * 300.00502 * 1 2 3 28 28 H 1.09009 * 109.46803 * 60.00093 * 1 2 3 29 29 H 1.07994 * 126.57440 * 0.02562 * 3 2 1 30 30 H 1.07997 * 126.57797 * 180.24179 * 4 3 2 31 31 H 1.09000 * 109.47401 * 57.91681 * 8 6 5 32 32 H 1.09007 * 109.47146 * 177.91781 * 8 6 5 33 33 H 1.09000 * 109.47391 * 297.91717 * 8 6 5 34 34 H 1.09000 * 109.46947 * 30.00221 * 12 11 9 35 35 H 1.09001 * 109.47578 * 149.99754 * 12 11 9 36 36 H 0.96995 * 119.99897 * 179.97438 * 16 15 13 37 37 H 1.08994 * 109.47321 * 25.21103 * 21 11 9 38 38 H 1.08996 * 109.47077 * 145.21417 * 21 11 9 39 39 H 1.08994 * 115.55400 * 27.89849 * 22 21 11 40 40 H 1.08998 * 117.50602 * 0.02562 * 23 22 21 41 41 H 1.09004 * 117.49479 * 145.02556 * 23 22 21 42 42 H 1.08994 * 117.49678 * 214.97603 * 24 22 21 43 43 H 1.09003 * 117.49998 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5814 -0.7121 0.0009 6 6 4.7706 -1.6378 0.0020 7 1 5.6885 -1.0500 0.0025 8 6 4.7309 -2.5205 -1.2470 9 6 4.7298 -2.5066 1.2327 10 8 3.6778 -2.6984 1.8050 11 7 5.8622 -3.0705 1.6973 12 6 5.8127 -3.9665 2.8554 13 6 5.9924 -3.1649 4.1187 14 1 6.1301 -2.0951 4.0645 15 6 5.9820 -3.7973 5.3439 16 7 6.1382 -3.0977 6.4465 17 14 5.7445 -5.6478 5.4376 18 1 7.0673 -6.3202 5.3804 19 1 5.0671 -5.9960 6.7125 20 1 4.9102 -6.0984 4.2948 21 6 7.1428 -2.7875 1.0444 22 6 7.4456 -3.8825 0.0195 23 6 8.6985 -4.7318 0.2426 24 6 8.6691 -3.6903 -0.8788 25 8 2.2924 -1.0894 0.0006 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.9665 2.1204 0.0004 30 1 4.5212 1.2433 0.0112 31 1 4.7231 -1.8910 -2.1368 32 1 5.6104 -3.1643 -1.2651 33 1 3.8310 -3.1353 -1.2291 34 1 4.8484 -4.4740 2.8811 35 1 6.6101 -4.7055 2.7774 36 1 6.1305 -3.5426 7.3083 37 1 7.0881 -1.8228 0.5400 38 1 7.9345 -2.7617 1.7931 39 1 6.5750 -4.3742 -0.4143 40 1 9.3069 -4.5109 1.1197 41 1 8.6522 -5.7822 -0.0449 42 1 8.6035 -4.0559 -1.9035 43 1 9.2586 -2.7841 -0.7394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742639270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:32 Heat of formation + Delta-G solvation = -16.604685 kcal Electronic energy + Delta-G solvation = -23857.838473 eV Core-core repulsion = 20483.962480 eV Total energy + Delta-G solvation = -3373.875994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.55083 -40.99211 -38.39911 -36.18121 -35.38978 -34.48143 -34.04905 -32.05811 -30.36416 -27.76682 -27.41005 -25.59575 -23.67444 -23.10926 -22.69245 -22.00560 -21.18724 -19.80651 -19.11758 -18.23636 -17.94864 -17.03666 -16.86430 -16.37411 -16.17348 -15.58740 -15.31369 -15.12773 -14.79374 -14.41536 -14.21125 -13.96686 -13.78746 -13.70488 -13.67345 -13.52822 -13.26816 -13.09891 -12.91111 -12.70716 -12.52561 -12.42500 -12.35912 -12.22905 -12.01361 -11.78630 -11.19973 -10.87592 -10.84126 -10.76320 -10.55790 -9.47633 -9.18775 -8.36277 -6.40937 0.74970 1.28171 1.33019 1.43729 1.61317 1.72634 2.07591 2.23323 2.28726 2.96419 2.98775 3.46934 3.57161 3.88026 3.93287 4.00503 4.06574 4.17851 4.18997 4.20231 4.43648 4.53261 4.57737 4.70765 4.72159 4.76655 4.77719 4.82890 4.84828 4.90617 4.92891 4.96378 5.04967 5.12147 5.16373 5.27790 5.36536 5.38692 5.45403 5.61164 5.68291 6.21268 6.30048 6.59510 6.63154 7.18701 7.35694 8.80920 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.005699 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.775510 B = 4911.806020 C = 6527.997737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.036 4.036 3 C -0.223 4.223 4 C -0.211 4.211 5 C -0.018 4.018 6 C -0.021 4.021 7 H 0.146 0.854 8 C -0.137 4.137 9 C 0.501 3.499 10 O -0.586 6.586 11 N -0.591 5.591 12 C 0.230 3.770 13 C -0.534 4.534 14 H 0.027 0.973 15 C 0.012 3.988 16 N -0.945 5.945 17 Si 0.945 3.055 18 H -0.248 1.248 19 H -0.281 1.281 20 H -0.259 1.259 21 C 0.133 3.867 22 C -0.187 4.187 23 C -0.190 4.190 24 C -0.144 4.144 25 O -0.184 6.184 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.014 0.986 35 H 0.049 0.951 36 H 0.268 0.732 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.220 3.266 -21.064 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C -0.242 4.242 4 C -0.230 4.230 5 C -0.068 4.068 6 C -0.042 4.042 7 H 0.163 0.837 8 C -0.194 4.194 9 C 0.289 3.711 10 O -0.466 6.466 11 N -0.320 5.320 12 C 0.108 3.892 13 C -0.573 4.573 14 H 0.046 0.954 15 C -0.186 4.186 16 N -0.585 5.585 17 Si 0.768 3.232 18 H -0.172 1.172 19 H -0.207 1.207 20 H -0.183 1.183 21 C 0.011 3.989 22 C -0.206 4.206 23 C -0.227 4.227 24 C -0.181 4.181 25 O -0.081 6.081 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.130 0.870 29 H 0.190 0.810 30 H 0.187 0.813 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.132 0.868 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.397 2.838 -20.560 20.759 hybrid contribution -0.167 -0.449 1.220 1.310 sum -0.564 2.390 -19.341 19.496 Atomic orbital electron populations 1.20455 0.82856 1.04288 1.05106 1.23333 0.95836 0.84153 1.05291 1.21844 0.92220 1.00323 1.09830 1.21905 0.99659 0.93139 1.08334 1.22040 0.83006 0.94462 1.07287 1.20045 0.94598 0.95174 0.94396 0.83695 1.21879 1.03454 0.99562 0.94496 1.21116 0.83378 0.80648 0.85923 1.90672 1.32228 1.62750 1.60975 1.47916 1.07465 1.46531 1.30132 1.19251 0.96701 0.89801 0.83481 1.21539 1.49757 0.94503 0.91491 0.95445 1.25826 0.93948 1.03923 0.94878 1.70050 1.51571 1.38316 0.98575 0.85748 0.79981 0.79286 0.78194 1.17161 1.20670 1.18344 1.21418 0.84513 0.98423 0.94531 1.22792 0.93763 1.01927 1.02104 1.23129 1.00376 0.97629 1.01536 1.23062 0.98238 1.00878 0.95928 1.84010 1.16916 1.36155 1.71029 0.91131 0.88702 0.86997 0.80969 0.81317 0.88494 0.88732 0.93812 0.96828 0.93331 0.92263 0.87868 0.90904 0.87647 0.89307 0.88389 0.86766 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.42 71.23 0.74 -0.71 16 2 C -0.04 -1.08 7.32 24.83 0.18 -0.90 16 3 C -0.22 -6.16 10.81 22.19 0.24 -5.92 16 4 C -0.21 -6.25 10.78 22.19 0.24 -6.01 16 5 C -0.02 -0.60 5.43 24.83 0.13 -0.46 16 6 C -0.02 -0.65 2.42 -12.29 -0.03 -0.68 16 7 H 0.15 3.47 6.04 -2.39 -0.01 3.46 16 8 C -0.14 -3.22 9.13 71.98 0.66 -2.56 16 9 C 0.50 21.57 6.80 87.66 0.60 22.17 16 10 O -0.59 -32.08 15.38 8.96 0.14 -31.95 16 11 N -0.59 -24.53 2.46 -826.18 -2.03 -26.56 16 12 C 0.23 11.58 4.23 85.63 0.36 11.94 16 13 C -0.53 -32.35 9.94 25.60 0.25 -32.09 16 14 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 15 C 0.01 0.74 5.47 84.65 0.46 1.20 16 16 N -0.94 -60.93 13.96 21.45 0.30 -60.63 16 17 Si 0.95 45.59 27.47 68.60 1.88 47.47 16 18 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.26 -12.21 6.54 99.48 0.65 -11.56 16 21 C 0.13 3.95 5.46 86.38 0.47 4.42 16 22 C -0.19 -4.29 4.73 -10.79 -0.05 -4.34 16 23 C -0.19 -4.01 10.18 30.62 0.31 -3.69 16 24 C -0.14 -2.26 10.25 30.62 0.31 -1.95 16 25 O -0.18 -6.95 10.06 9.54 0.10 -6.85 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.17 3.56 8.06 -2.91 -0.02 3.53 16 30 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.88 4.75 -2.38 -0.01 1.87 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.01 0.76 6.52 -2.39 -0.02 0.74 16 35 H 0.05 2.23 7.50 -2.39 -0.02 2.21 16 36 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 37 H 0.10 2.40 5.74 -2.39 -0.01 2.39 16 38 H 0.07 2.36 7.84 -2.39 -0.02 2.34 16 39 H 0.11 2.51 6.53 -2.39 -0.02 2.50 16 40 H 0.09 2.04 8.03 -2.39 -0.02 2.02 16 41 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -84.30 354.02 6.22 -78.09 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.94 Total: 20.03 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 4.89 Total: -19.59 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -1.73 Total: -87.20 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: 0.23 Total: -38.80 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -84.30 6.22 -78.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742639270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.482 kcal (2) G-P(sol) polarization free energy of solvation -84.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds