Wall clock time and date at job start Tue Mar 31 2020 07:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34508 * 125.79351 * 2 1 4 4 C 1.41376 * 106.84177 * 180.02562 * 3 2 1 5 5 C 1.34513 * 106.84114 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.79123 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47014 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47213 * 119.99529 * 6 5 4 9 9 C 1.50698 * 109.47276 * 240.00008 * 6 5 4 10 10 O 1.21294 * 119.99759 * 339.80215 * 9 6 5 11 11 N 1.34770 * 120.00162 * 159.79745 * 9 6 5 12 12 C 1.37099 * 120.00230 * 3.54122 * 11 9 6 13 13 H 1.08002 * 120.00044 * 123.35514 * 12 11 9 14 14 C 1.38948 * 120.00107 * 303.35646 * 12 11 9 15 15 N 1.31405 * 120.00262 * 156.13015 * 14 12 11 16 16 Si 1.86809 * 119.99654 * 336.13112 * 14 12 11 17 17 H 1.48498 * 109.46815 * 91.50455 * 16 14 12 18 18 H 1.48495 * 109.46802 * 211.50204 * 16 14 12 19 19 H 1.48494 * 109.47014 * 331.50573 * 16 14 12 20 20 C 1.46501 * 120.00246 * 183.53652 * 11 9 6 21 21 C 1.55239 * 110.58198 * 235.13729 * 20 11 9 22 22 C 1.54890 * 102.58610 * 203.33387 * 21 20 11 23 23 C 1.54268 * 104.31334 * 37.93410 * 22 21 20 24 24 C 1.53879 * 106.59596 * 336.32028 * 23 22 21 25 25 O 1.34299 * 108.42193 * 0.26143 * 5 4 3 26 26 H 1.09007 * 109.46899 * 89.99667 * 1 2 3 27 27 H 1.08993 * 109.47545 * 210.00117 * 1 2 3 28 28 H 1.09008 * 109.46773 * 330.00395 * 1 2 3 29 29 H 1.08008 * 126.57419 * 0.02562 * 3 2 1 30 30 H 1.08000 * 126.58190 * 180.02562 * 4 3 2 31 31 H 1.08993 * 109.47704 * 298.00222 * 8 6 5 32 32 H 1.08999 * 109.47193 * 58.00757 * 8 6 5 33 33 H 1.09004 * 109.47193 * 178.00361 * 8 6 5 34 34 H 0.97000 * 119.99925 * 180.02562 * 15 14 12 35 35 H 1.09008 * 110.43372 * 357.71788 * 20 11 9 36 36 H 1.08998 * 110.89766 * 85.04726 * 21 20 11 37 37 H 1.08995 * 110.76862 * 321.56886 * 21 20 11 38 38 H 1.08998 * 110.48795 * 279.18924 * 22 21 20 39 39 H 1.09000 * 110.48356 * 156.67726 * 22 21 20 40 40 H 1.08998 * 110.03447 * 95.60410 * 23 22 21 41 41 H 1.08995 * 110.03019 * 216.99065 * 23 22 21 42 42 H 1.09004 * 110.03034 * 119.28430 * 24 23 22 43 43 H 1.08992 * 110.03209 * 240.66487 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2938 1.0910 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5813 -0.7123 -0.0004 6 6 4.7705 -1.6381 -0.0003 7 1 5.6885 -1.0504 -0.0009 8 6 4.7300 -2.5202 1.2491 9 6 4.7304 -2.5075 -1.2305 10 8 3.6869 -2.6638 -1.8289 11 7 5.8539 -3.1111 -1.6660 12 6 7.0170 -2.9936 -0.9498 13 1 7.5322 -3.8789 -0.6074 14 6 7.5330 -1.7354 -0.6643 15 7 8.3312 -1.5710 0.3665 16 14 7.0920 -0.2777 -1.7461 17 1 5.8895 0.3996 -1.1979 18 1 8.2281 0.6781 -1.7758 19 1 6.8079 -0.7520 -3.1243 20 6 5.8324 -3.8930 -2.9048 21 6 6.3471 -5.3350 -2.6489 22 6 6.8231 -5.7780 -4.0547 23 6 7.4588 -4.5091 -4.6594 24 6 6.8289 -3.3106 -3.9282 25 8 2.2924 -1.0895 -0.0055 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 1.9666 2.1204 0.0004 30 1 4.5213 1.2431 -0.0004 31 1 4.7948 -1.8936 2.1386 32 1 3.7959 -3.0816 1.2675 33 1 5.5705 -3.2140 1.2315 34 1 8.6911 -0.6926 0.5660 35 1 4.8259 -3.9161 -3.3228 36 1 5.5419 -5.9779 -2.2934 37 1 7.1782 -5.3294 -1.9437 38 1 5.9767 -6.1054 -4.6585 39 1 7.5632 -6.5740 -3.9736 40 1 8.5370 -4.5192 -4.4997 41 1 7.2401 -4.4538 -5.7258 42 1 7.6014 -2.7391 -3.4137 43 1 6.3046 -2.6728 -4.6397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742694796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:36 Heat of formation + Delta-G solvation = -24.006725 kcal Electronic energy + Delta-G solvation = -24800.010507 eV Core-core repulsion = 21425.813536 eV Total energy + Delta-G solvation = -3374.196970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.07860 -39.32565 -36.99442 -34.42687 -33.25650 -32.65696 -31.86621 -30.60713 -28.12209 -27.23567 -25.98458 -24.77013 -23.23921 -21.31216 -20.37426 -20.11367 -19.35831 -19.03778 -17.25055 -16.17886 -15.91494 -15.55403 -15.10825 -14.77249 -14.26049 -14.08894 -13.75130 -13.52337 -13.08596 -12.89718 -12.80005 -12.66052 -12.59861 -12.31878 -12.21936 -11.75563 -11.53381 -11.42958 -11.22329 -11.14934 -10.85327 -10.69467 -10.65469 -10.52850 -10.12752 -10.03000 -9.83811 -9.72029 -9.37788 -9.00993 -8.60160 -7.75517 -7.49679 -6.57590 -4.31434 2.24003 3.04431 3.08533 3.19453 3.28223 3.40254 3.70944 4.05237 4.36927 4.74410 5.06540 5.21964 5.26050 5.29909 5.41595 5.48609 5.59106 5.59867 5.79878 5.84108 5.94957 6.01088 6.06342 6.10351 6.12270 6.15954 6.25464 6.29851 6.36922 6.40469 6.41654 6.52748 6.57811 6.63976 6.68286 6.84866 6.89750 6.98088 7.01765 7.08973 7.62509 7.76489 7.80001 8.41838 8.90984 9.22182 9.68293 10.50474 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.006454 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.463658 B = 4337.032202 C = 5013.969007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.033 4.033 3 C -0.214 4.214 4 C -0.224 4.224 5 C 0.034 3.966 6 C -0.031 4.031 7 H 0.131 0.869 8 C -0.126 4.126 9 C 0.500 3.500 10 O -0.581 6.581 11 N -0.462 5.462 12 C -0.346 4.346 13 H 0.101 0.899 14 C 0.079 3.921 15 N -0.848 5.848 16 Si 0.825 3.175 17 H -0.254 1.254 18 H -0.282 1.282 19 H -0.252 1.252 20 C 0.130 3.870 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.133 4.133 25 O -0.152 6.152 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.276 0.724 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.050 0.455 -1.715 6.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 C -0.233 4.233 4 C -0.243 4.243 5 C -0.018 4.018 6 C -0.052 4.052 7 H 0.148 0.852 8 C -0.183 4.183 9 C 0.288 3.712 10 O -0.464 6.464 11 N -0.183 5.183 12 C -0.473 4.473 13 H 0.118 0.882 14 C -0.130 4.130 15 N -0.482 5.482 16 Si 0.649 3.351 17 H -0.179 1.179 18 H -0.208 1.208 19 H -0.176 1.176 20 C 0.026 3.974 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.171 4.171 25 O -0.047 6.047 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.528 0.176 -1.904 6.803 hybrid contribution 0.304 1.299 -0.635 1.478 sum -6.224 1.475 -2.539 6.882 Atomic orbital electron populations 1.20189 0.85767 1.03322 1.03030 1.22325 0.93898 0.84755 1.07362 1.21408 0.92733 0.98830 1.10333 1.21567 0.97945 0.93975 1.10849 1.22179 0.82745 0.93894 1.02941 1.20143 0.92958 0.95675 0.96396 0.85175 1.21538 1.02860 0.99617 0.94335 1.20423 0.83526 0.81896 0.85325 1.90568 1.30817 1.65575 1.59464 1.43629 1.08275 1.46416 1.20011 1.18790 1.02441 0.94233 1.31866 0.88187 1.25590 0.94661 0.97885 0.94828 1.69767 1.30789 1.24671 1.22925 0.87852 0.79272 0.83629 0.84324 1.17898 1.20813 1.17557 1.21956 0.98593 0.90776 0.86063 1.22774 1.01103 0.95797 0.96673 1.22274 0.99631 0.97177 0.96819 1.22040 0.99949 0.94959 0.98577 1.22490 0.99740 0.97498 0.97374 1.84029 1.16211 1.34181 1.70311 0.90594 0.90895 0.89955 0.84144 0.83902 0.92532 0.93222 0.89215 0.91308 0.89842 0.92426 0.89948 0.92326 0.92192 0.92056 0.92797 0.89866 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.42 36.01 0.38 -0.44 16 2 C -0.03 -0.58 7.32 -35.62 -0.26 -0.84 16 3 C -0.21 -3.77 10.81 -39.71 -0.43 -4.20 16 4 C -0.22 -4.58 9.94 -39.71 -0.39 -4.97 16 5 C 0.03 0.75 5.38 -35.62 -0.19 0.56 16 6 C -0.03 -0.71 1.66 -92.93 -0.15 -0.86 16 7 H 0.13 3.08 2.90 -51.93 -0.15 2.93 16 8 C -0.13 -2.60 9.08 37.16 0.34 -2.26 16 9 C 0.50 12.28 5.60 -10.99 -0.06 12.22 16 10 O -0.58 -15.50 15.11 -7.20 -0.11 -15.61 16 11 N -0.46 -10.83 1.86 -105.77 -0.20 -11.03 16 12 C -0.35 -8.39 6.44 -14.93 -0.10 -8.49 16 13 H 0.10 2.56 7.02 -52.49 -0.37 2.19 16 14 C 0.08 1.94 3.85 -17.47 -0.07 1.87 16 15 N -0.85 -21.61 13.96 55.50 0.77 -20.83 16 16 Si 0.83 19.13 24.32 -169.99 -4.13 15.00 16 17 H -0.25 -5.77 4.29 56.52 0.24 -5.53 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.25 -5.96 5.96 56.52 0.34 -5.62 16 20 C 0.13 2.72 3.26 -66.08 -0.22 2.51 16 21 C -0.13 -2.26 6.44 -24.55 -0.16 -2.41 16 22 C -0.12 -1.81 6.82 -25.07 -0.17 -1.98 16 23 C -0.12 -1.84 6.80 -25.61 -0.17 -2.02 16 24 C -0.13 -2.58 5.69 -25.61 -0.15 -2.73 16 25 O -0.15 -3.30 10.06 -7.04 -0.07 -3.37 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.14 2.00 8.06 -52.48 -0.42 1.57 16 30 H 0.14 2.79 6.98 -52.49 -0.37 2.42 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.92 7.13 -51.93 -0.37 1.55 16 34 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.08 1.84 6.98 -51.92 -0.36 1.48 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.58 6.56 -51.93 -0.34 1.24 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.79 5.60 -51.93 -0.29 1.50 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -28.57 331.25 -7.23 -35.80 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.68 Total: 9.09 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.81 Total: -14.05 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.58 Total: -31.86 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.18 Total: -18.97 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.13 Total: 15.00 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.57 -7.23 -35.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742694796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.794 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds