Wall clock time and date at job start Tue Mar 31 2020 07:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34508 * 125.79351 * 2 1 4 4 C 1.41376 * 106.84177 * 180.02562 * 3 2 1 5 5 C 1.34513 * 106.84114 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.79123 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47014 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47213 * 119.99529 * 6 5 4 9 9 C 1.50698 * 109.47276 * 240.00008 * 6 5 4 10 10 O 1.21294 * 119.99759 * 339.80215 * 9 6 5 11 11 N 1.34770 * 120.00162 * 159.79745 * 9 6 5 12 12 C 1.37099 * 120.00230 * 3.54122 * 11 9 6 13 13 H 1.08002 * 120.00044 * 123.35514 * 12 11 9 14 14 C 1.38948 * 120.00107 * 303.35646 * 12 11 9 15 15 N 1.31405 * 120.00262 * 156.13015 * 14 12 11 16 16 Si 1.86809 * 119.99654 * 336.13112 * 14 12 11 17 17 H 1.48498 * 109.46815 * 91.50455 * 16 14 12 18 18 H 1.48495 * 109.46802 * 211.50204 * 16 14 12 19 19 H 1.48494 * 109.47014 * 331.50573 * 16 14 12 20 20 C 1.46501 * 120.00246 * 183.53652 * 11 9 6 21 21 C 1.55239 * 110.58198 * 235.13729 * 20 11 9 22 22 C 1.54890 * 102.58610 * 203.33387 * 21 20 11 23 23 C 1.54268 * 104.31334 * 37.93410 * 22 21 20 24 24 C 1.53879 * 106.59596 * 336.32028 * 23 22 21 25 25 O 1.34299 * 108.42193 * 0.26143 * 5 4 3 26 26 H 1.09007 * 109.46899 * 89.99667 * 1 2 3 27 27 H 1.08993 * 109.47545 * 210.00117 * 1 2 3 28 28 H 1.09008 * 109.46773 * 330.00395 * 1 2 3 29 29 H 1.08008 * 126.57419 * 0.02562 * 3 2 1 30 30 H 1.08000 * 126.58190 * 180.02562 * 4 3 2 31 31 H 1.08993 * 109.47704 * 298.00222 * 8 6 5 32 32 H 1.08999 * 109.47193 * 58.00757 * 8 6 5 33 33 H 1.09004 * 109.47193 * 178.00361 * 8 6 5 34 34 H 0.97000 * 119.99925 * 180.02562 * 15 14 12 35 35 H 1.09008 * 110.43372 * 357.71788 * 20 11 9 36 36 H 1.08998 * 110.89766 * 85.04726 * 21 20 11 37 37 H 1.08995 * 110.76862 * 321.56886 * 21 20 11 38 38 H 1.08998 * 110.48795 * 279.18924 * 22 21 20 39 39 H 1.09000 * 110.48356 * 156.67726 * 22 21 20 40 40 H 1.08998 * 110.03447 * 95.60410 * 23 22 21 41 41 H 1.08995 * 110.03019 * 216.99065 * 23 22 21 42 42 H 1.09004 * 110.03034 * 119.28430 * 24 23 22 43 43 H 1.08992 * 110.03209 * 240.66487 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2938 1.0910 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5813 -0.7123 -0.0004 6 6 4.7705 -1.6381 -0.0003 7 1 5.6885 -1.0504 -0.0009 8 6 4.7300 -2.5202 1.2491 9 6 4.7304 -2.5075 -1.2305 10 8 3.6869 -2.6638 -1.8289 11 7 5.8539 -3.1111 -1.6660 12 6 7.0170 -2.9936 -0.9498 13 1 7.5322 -3.8789 -0.6074 14 6 7.5330 -1.7354 -0.6643 15 7 8.3312 -1.5710 0.3665 16 14 7.0920 -0.2777 -1.7461 17 1 5.8895 0.3996 -1.1979 18 1 8.2281 0.6781 -1.7758 19 1 6.8079 -0.7520 -3.1243 20 6 5.8324 -3.8930 -2.9048 21 6 6.3471 -5.3350 -2.6489 22 6 6.8231 -5.7780 -4.0547 23 6 7.4588 -4.5091 -4.6594 24 6 6.8289 -3.3106 -3.9282 25 8 2.2924 -1.0895 -0.0055 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 1.9666 2.1204 0.0004 30 1 4.5213 1.2431 -0.0004 31 1 4.7948 -1.8936 2.1386 32 1 3.7959 -3.0816 1.2675 33 1 5.5705 -3.2140 1.2315 34 1 8.6911 -0.6926 0.5660 35 1 4.8259 -3.9161 -3.3228 36 1 5.5419 -5.9779 -2.2934 37 1 7.1782 -5.3294 -1.9437 38 1 5.9767 -6.1054 -4.6585 39 1 7.5632 -6.5740 -3.9736 40 1 8.5370 -4.5192 -4.4997 41 1 7.2401 -4.4538 -5.7258 42 1 7.6014 -2.7391 -3.4137 43 1 6.3046 -2.6728 -4.6397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742694796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:36 Heat of formation + Delta-G solvation = -38.622854 kcal Electronic energy + Delta-G solvation = -24800.644310 eV Core-core repulsion = 21425.813536 eV Total energy + Delta-G solvation = -3374.830773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.58669 -41.13717 -38.59118 -36.30547 -34.87642 -34.08691 -33.77528 -31.93679 -29.56819 -28.79007 -27.39395 -26.68658 -24.86033 -22.82853 -21.94061 -21.59007 -20.91114 -20.73573 -19.06268 -17.90814 -17.60084 -17.04719 -16.77148 -16.27580 -16.08925 -15.73904 -15.45578 -15.16014 -14.73440 -14.43636 -14.19927 -13.95400 -13.90380 -13.77957 -13.71604 -13.33531 -13.16094 -13.12696 -12.89174 -12.73059 -12.50210 -12.31569 -12.12320 -11.95215 -11.83241 -11.70145 -11.42487 -11.22234 -11.02071 -10.79414 -10.49516 -9.42016 -9.19546 -8.54084 -6.28288 0.74477 1.17675 1.28043 1.37106 1.59844 1.72499 2.04553 2.15351 2.60708 2.82021 3.63768 3.78344 3.83831 3.94652 4.01459 4.09613 4.12715 4.25556 4.33776 4.55703 4.56091 4.62275 4.66406 4.70893 4.71460 4.76569 4.81377 4.87065 4.88722 4.93077 4.98909 5.06924 5.12796 5.20187 5.21908 5.30429 5.36353 5.44177 5.53786 5.64897 5.71466 5.92696 6.27771 6.43469 6.95553 7.30415 7.77606 8.56853 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.006454 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.463658 B = 4337.032202 C = 5013.969007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.033 4.033 3 C -0.219 4.219 4 C -0.229 4.229 5 C -0.005 4.005 6 C -0.032 4.032 7 H 0.120 0.880 8 C -0.117 4.117 9 C 0.490 3.510 10 O -0.609 6.609 11 N -0.463 5.463 12 C -0.337 4.337 13 H 0.084 0.916 14 C 0.064 3.936 15 N -0.871 5.871 16 Si 0.856 3.144 17 H -0.249 1.249 18 H -0.278 1.278 19 H -0.262 1.262 20 C 0.117 3.883 21 C -0.121 4.121 22 C -0.111 4.111 23 C -0.111 4.111 24 C -0.132 4.132 25 O -0.177 6.177 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.177 0.823 30 H 0.145 0.855 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.281 0.719 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 0.823 -2.437 7.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 C -0.238 4.238 4 C -0.248 4.248 5 C -0.055 4.055 6 C -0.053 4.053 7 H 0.137 0.863 8 C -0.174 4.174 9 C 0.279 3.721 10 O -0.494 6.494 11 N -0.183 5.183 12 C -0.465 4.465 13 H 0.101 0.899 14 C -0.143 4.143 15 N -0.505 5.505 16 Si 0.680 3.320 17 H -0.174 1.174 18 H -0.203 1.203 19 H -0.186 1.186 20 C 0.014 3.986 21 C -0.159 4.159 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.171 4.171 25 O -0.074 6.074 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.135 0.865 29 H 0.195 0.805 30 H 0.163 0.837 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.538 0.540 -2.629 8.002 hybrid contribution 0.552 1.191 -0.402 1.373 sum -6.986 1.731 -3.031 7.809 Atomic orbital electron populations 1.20472 0.81870 1.05416 1.04447 1.23447 0.96040 0.83833 1.04970 1.21800 0.91224 1.00658 1.10086 1.21838 0.99567 0.93532 1.09907 1.22080 0.83009 0.94350 1.06089 1.20047 0.93369 0.95695 0.96155 0.86276 1.21457 1.02241 0.99345 0.94380 1.20837 0.83339 0.82141 0.85763 1.90527 1.31662 1.66779 1.60428 1.43743 1.07701 1.46247 1.20649 1.18556 1.02293 0.93674 1.31956 0.89858 1.25776 0.94632 0.98871 0.95064 1.69794 1.31774 1.25356 1.23614 0.87370 0.79346 0.82401 0.82869 1.17436 1.20326 1.18618 1.22207 0.98514 0.92445 0.85480 1.22720 1.00551 0.93942 0.98688 1.22260 1.00766 0.97382 0.94431 1.22031 1.00076 0.93263 0.99534 1.22463 0.98689 0.98912 0.96997 1.84002 1.16315 1.36117 1.70958 0.89325 0.90163 0.86511 0.80511 0.83719 0.90855 0.92995 0.90640 0.90856 0.91240 0.92144 0.91416 0.90669 0.89784 0.91333 0.90319 0.92230 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.42 71.24 0.74 -0.67 16 2 C -0.03 -1.11 7.32 24.83 0.18 -0.92 16 3 C -0.22 -7.25 10.81 22.19 0.24 -7.01 16 4 C -0.23 -9.22 9.94 22.19 0.22 -9.00 16 5 C 0.00 -0.20 5.38 24.83 0.13 -0.07 16 6 C -0.03 -1.49 1.66 -12.29 -0.02 -1.51 16 7 H 0.12 5.75 2.90 -2.39 -0.01 5.74 16 8 C -0.12 -4.91 9.08 71.98 0.65 -4.26 16 9 C 0.49 24.69 5.60 87.66 0.49 25.18 16 10 O -0.61 -33.29 15.11 9.11 0.14 -33.16 16 11 N -0.46 -22.24 1.86 -606.95 -1.13 -23.37 16 12 C -0.34 -16.77 6.44 84.04 0.54 -16.23 16 13 H 0.08 4.41 7.02 -2.91 -0.02 4.39 16 14 C 0.06 3.18 3.85 84.93 0.33 3.50 16 15 N -0.87 -44.89 13.96 21.66 0.30 -44.59 16 16 Si 0.86 39.78 24.32 68.60 1.67 41.45 16 17 H -0.25 -11.36 4.29 99.48 0.43 -10.93 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.26 -12.51 5.96 99.48 0.59 -11.92 16 20 C 0.12 4.95 3.26 46.19 0.15 5.10 16 21 C -0.12 -4.29 6.44 32.01 0.21 -4.09 16 22 C -0.11 -3.03 6.82 31.67 0.22 -2.82 16 23 C -0.11 -3.25 6.80 31.32 0.21 -3.04 16 24 C -0.13 -5.12 5.69 31.32 0.18 -4.94 16 25 O -0.18 -7.67 10.06 9.69 0.10 -7.57 16 26 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.18 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.15 5.60 6.98 -2.91 -0.02 5.58 16 31 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 33 H 0.07 3.33 7.13 -2.39 -0.02 3.32 16 34 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 35 H 0.07 3.13 6.98 -2.38 -0.02 3.11 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 2.60 6.56 -2.39 -0.02 2.59 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 2.58 5.60 -2.38 -0.01 2.57 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -63.12 331.25 6.16 -56.96 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.61 Total: 31.03 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.47 Total: -20.76 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -0.83 Total: -67.95 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: 0.24 Total: -40.72 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 1.67 Total: 41.45 kcal Total: -63.12 6.16 -56.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742694796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.337 kcal (2) G-P(sol) polarization free energy of solvation -63.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds