Wall clock time and date at job start Tue Mar 31 2020 07:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.87958 * 2 1 4 4 O 1.42906 * 109.46893 * 56.16255 * 3 2 1 5 5 C 1.54316 * 109.88716 * 121.03146 * 2 1 3 6 6 C 1.55148 * 103.01953 * 97.28490 * 5 2 1 7 7 C 1.54902 * 101.65093 * 35.64851 * 6 5 2 8 8 N 1.47439 * 110.02183 * 238.87945 * 2 1 3 9 9 C 1.46905 * 110.99636 * 117.26324 * 8 2 1 10 10 C 1.50706 * 109.46919 * 176.25964 * 9 8 2 11 11 C 1.38295 * 119.92707 * 269.72321 * 10 9 8 12 12 C 1.38108 * 120.06647 * 179.72628 * 11 10 9 13 13 C 1.38884 * 119.92789 * 0.57204 * 12 11 10 14 14 O 1.35752 * 120.06588 * 179.68359 * 13 12 11 15 15 C 1.34829 * 116.99327 * 185.57071 * 14 13 12 16 16 H 1.07994 * 120.00789 * 354.93732 * 15 14 13 17 17 C 1.38662 * 119.99761 * 174.94437 * 15 14 13 18 18 N 1.31559 * 119.99486 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00247 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46935 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47022 * 119.99636 * 19 17 15 22 22 H 1.48495 * 109.47121 * 240.00001 * 19 17 15 23 23 C 1.38884 * 119.86172 * 359.70194 * 13 12 11 24 24 C 1.38098 * 119.92809 * 0.02562 * 23 13 12 25 25 H 1.09004 * 109.47037 * 60.69899 * 1 2 3 26 26 H 1.08997 * 109.46973 * 180.70018 * 1 2 3 27 27 H 1.09002 * 109.46941 * 300.70011 * 1 2 3 28 28 H 1.09002 * 109.47222 * 296.16203 * 3 2 1 29 29 H 1.08999 * 109.47028 * 176.16212 * 3 2 1 30 30 H 0.96700 * 113.99678 * 180.02562 * 4 3 2 31 31 H 1.08997 * 110.70574 * 215.66590 * 5 2 1 32 32 H 1.09004 * 110.71024 * 338.72889 * 5 2 1 33 33 H 1.08994 * 110.98713 * 153.74536 * 6 5 2 34 34 H 1.09003 * 110.98814 * 277.56061 * 6 5 2 35 35 H 1.09012 * 110.37123 * 81.76152 * 7 6 5 36 36 H 1.08996 * 110.37533 * 203.98501 * 7 6 5 37 37 H 1.09007 * 109.46781 * 296.25605 * 9 8 2 38 38 H 1.08988 * 109.47286 * 56.25843 * 9 8 2 39 39 H 1.08000 * 119.97105 * 359.97438 * 11 10 9 40 40 H 1.08000 * 120.03577 * 180.27710 * 12 11 10 41 41 H 0.96998 * 119.99418 * 180.02562 * 18 17 15 42 42 H 1.07994 * 120.02935 * 180.02562 * 23 13 12 43 43 H 1.08007 * 119.96044 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0503 1.4388 0.0000 4 8 1.5067 2.1419 1.1191 5 6 2.0550 -0.7481 1.2435 6 6 2.3541 -2.1687 0.6963 7 6 2.8637 -1.8529 -0.7320 8 7 2.0348 -0.7160 -1.1859 9 6 2.8053 0.1833 -2.0553 10 6 3.3808 -0.6016 -3.2059 11 6 4.6326 -1.1779 -3.0905 12 6 5.1603 -1.9026 -4.1411 13 6 4.4375 -2.0421 -5.3187 14 8 4.9562 -2.7484 -6.3555 15 6 4.2556 -2.7482 -7.5075 16 1 3.2877 -2.2712 -7.5509 17 6 4.7778 -3.3607 -8.6366 18 7 5.9571 -3.9415 -8.5838 19 14 3.8070 -3.3612 -10.2324 20 1 2.5204 -2.6480 -10.0292 21 1 4.5922 -2.6752 -11.2898 22 1 3.5361 -4.7613 -10.6466 23 6 3.1830 -1.4573 -5.4336 24 6 2.6585 -0.7387 -4.3773 25 1 -0.3633 0.5030 -0.8962 26 1 -0.3633 -1.0276 0.0126 27 1 -0.3633 0.5247 0.8837 28 1 1.7478 1.9346 -0.9224 29 1 3.1381 1.4318 0.0688 30 1 1.7942 3.0630 1.1823 31 1 2.9650 -0.2802 1.6190 32 1 1.2926 -0.7846 2.0217 33 1 3.1272 -2.6598 1.2871 34 1 1.4476 -2.7730 0.6627 35 1 3.9158 -1.5687 -0.7054 36 1 2.7205 -2.7138 -1.3850 37 1 2.1509 0.9654 -2.4402 38 1 3.6151 0.6360 -1.4833 39 1 5.1964 -1.0647 -2.1763 40 1 6.1360 -2.3562 -4.0487 41 1 6.3225 -4.3697 -9.3738 42 1 2.6184 -1.5644 -6.3479 43 1 1.6832 -0.2833 -4.4662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759903196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:18 Heat of formation + Delta-G solvation = -64.406950 kcal Electronic energy + Delta-G solvation = -23379.622764 eV Core-core repulsion = 20003.673908 eV Total energy + Delta-G solvation = -3375.948856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31493 -40.49189 -38.32584 -37.13616 -34.47108 -33.65371 -32.50187 -31.77909 -30.22935 -27.92681 -27.45367 -25.79943 -25.39220 -23.68851 -22.55265 -21.57831 -19.86242 -19.67717 -18.84182 -18.37554 -17.05110 -16.63882 -16.34783 -16.25503 -15.87267 -15.69326 -15.48321 -15.21353 -14.88114 -14.55825 -14.43437 -14.26950 -13.67625 -13.58209 -13.41849 -13.25026 -13.02760 -12.92853 -12.79223 -12.49697 -12.33160 -12.11039 -12.05139 -11.93644 -11.81777 -11.51001 -11.38279 -11.17012 -10.84122 -10.78300 -9.76587 -9.25963 -8.87337 -8.47620 -6.15503 0.60220 0.67396 1.34957 1.42945 1.53228 2.17531 2.71260 2.96665 3.19898 3.46505 3.51265 3.66764 3.81096 3.97300 4.04259 4.08896 4.19624 4.23135 4.32015 4.36940 4.47229 4.54646 4.60246 4.64991 4.70612 4.80239 4.91192 4.96212 4.98595 5.07092 5.09091 5.12489 5.15770 5.21617 5.29397 5.31754 5.49458 5.56361 5.72114 5.80851 6.03056 6.10549 6.14917 6.25290 6.90503 6.97470 7.78446 8.75912 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031918 B = 0.003157 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.046485 B = 8867.981118 C = 9100.662410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.093 3.907 3 C 0.068 3.932 4 O -0.580 6.580 5 C -0.119 4.119 6 C -0.127 4.127 7 C 0.043 3.957 8 N -0.520 5.520 9 C 0.104 3.896 10 C -0.155 4.155 11 C -0.057 4.057 12 C -0.203 4.203 13 C 0.115 3.885 14 O -0.233 6.233 15 C -0.413 4.413 16 H 0.101 0.899 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.243 4.243 24 C -0.050 4.050 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.396 0.604 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.272 0.728 42 H 0.116 0.884 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 11.059 18.740 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.004 3.996 3 C -0.010 4.010 4 O -0.387 6.387 5 C -0.157 4.157 6 C -0.165 4.165 7 C -0.085 4.085 8 N -0.245 5.245 9 C -0.023 4.023 10 C -0.156 4.156 11 C -0.075 4.075 12 C -0.223 4.223 13 C 0.065 3.935 14 O -0.140 6.140 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.262 4.262 24 C -0.069 4.069 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.246 0.754 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.159 0.841 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.392 10.088 18.417 23.003 hybrid contribution 0.960 0.370 -0.888 1.359 sum -8.431 10.458 17.528 22.084 Atomic orbital electron populations 1.21601 0.92983 1.01355 1.01428 1.21773 0.96720 0.91575 0.89498 1.22744 0.96642 0.92509 0.89148 1.86407 1.74191 1.29724 1.48396 1.22734 1.01358 0.94771 0.96834 1.22724 1.01802 0.97171 0.94845 1.23030 0.95750 0.93847 0.95827 1.63787 1.36378 1.08709 1.15663 1.21097 0.96146 0.93730 0.91289 1.19552 0.95304 1.04744 0.96031 1.20843 0.95101 0.94821 0.96782 1.20413 1.01184 1.07456 0.93215 1.19930 0.93158 0.91100 0.89326 1.83939 1.48339 1.62203 1.19501 1.21852 1.02614 1.38346 0.86065 0.88199 1.26583 0.97504 0.95417 1.02537 1.70191 1.18527 1.35799 1.31417 0.84532 0.77896 0.78847 0.74953 1.17524 1.19262 1.19337 1.21239 0.96933 1.06450 1.01610 1.20877 0.98810 0.95566 0.91630 0.93206 0.93048 0.91643 0.92511 0.93108 0.75445 0.91238 0.90262 0.89637 0.90987 0.92996 0.92141 0.89260 0.92614 0.84052 0.86984 0.91846 0.86611 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.53 71.98 0.61 -1.65 16 2 C 0.09 1.80 0.98 3.87 0.00 1.80 16 3 C 0.07 1.10 4.56 71.98 0.33 1.42 16 4 O -0.58 -8.55 12.63 -148.98 -1.88 -10.43 16 5 C -0.12 -2.09 5.81 31.78 0.18 -1.90 16 6 C -0.13 -2.36 7.08 31.98 0.23 -2.13 16 7 C 0.04 0.99 5.37 86.77 0.47 1.46 16 8 N -0.52 -11.97 4.89 -841.01 -4.12 -16.08 16 9 C 0.10 2.39 3.92 85.56 0.34 2.72 16 10 C -0.16 -4.78 4.80 -19.83 -0.10 -4.88 16 11 C -0.06 -1.87 8.42 22.25 0.19 -1.69 16 12 C -0.20 -8.64 9.99 22.39 0.22 -8.42 16 13 C 0.12 5.79 6.65 22.58 0.15 5.94 16 14 O -0.23 -14.20 9.76 -22.76 -0.22 -14.42 16 15 C -0.41 -24.32 9.49 67.92 0.64 -23.68 16 16 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 17 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 18 N -0.92 -56.95 13.67 21.62 0.30 -56.66 16 19 Si 1.02 43.27 29.55 68.60 2.03 45.30 16 20 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 C -0.24 -10.75 9.17 22.39 0.21 -10.54 16 24 C -0.05 -1.77 9.69 22.25 0.22 -1.55 16 25 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.22 7.59 -2.39 -0.02 1.20 16 28 H 0.06 0.88 6.52 -2.39 -0.02 0.87 16 29 H 0.05 0.77 6.76 -2.39 -0.02 0.75 16 30 H 0.40 2.42 9.12 -74.06 -0.68 1.74 16 31 H 0.07 1.17 7.80 -2.39 -0.02 1.15 16 32 H 0.08 1.34 7.83 -2.39 -0.02 1.32 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.16 6.15 -2.38 -0.01 1.14 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.87 6.84 -2.38 -0.02 1.86 16 38 H 0.06 1.11 6.28 -2.39 -0.02 1.10 16 39 H 0.14 3.67 7.10 -2.91 -0.02 3.65 16 40 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 43 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -71.39 339.74 0.60 -70.79 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.35 Total: 25.44 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 4.16 Total: -43.94 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -3.82 Total: -72.74 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -2.10 Total: -24.84 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -71.39 0.60 -70.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759903196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.379 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds