Wall clock time and date at job start Tue Mar 31 2020 07:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34515 * 125.78517 * 2 1 4 4 C 1.41382 * 106.83759 * 180.02562 * 3 2 1 5 5 C 1.34514 * 106.84353 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.79063 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47339 * 359.97438 * 6 5 4 8 8 C 1.53009 * 109.46797 * 239.99864 * 6 5 4 9 9 C 1.50700 * 109.47290 * 120.00114 * 6 5 4 10 10 O 1.21280 * 119.99964 * 24.95749 * 9 6 5 11 11 N 1.34774 * 120.00050 * 204.95663 * 9 6 5 12 12 C 1.46926 * 120.63084 * 354.93351 * 11 9 6 13 13 C 1.53198 * 108.77570 * 126.36889 * 12 11 9 14 14 C 1.53041 * 109.31085 * 54.63548 * 13 12 11 15 15 C 1.50694 * 109.44846 * 178.62129 * 14 13 12 16 16 H 1.07998 * 120.00207 * 120.05919 * 15 14 13 17 17 C 1.37878 * 120.00091 * 300.06629 * 15 14 13 18 18 N 1.31514 * 119.99937 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99873 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 90.00394 * 19 17 15 21 21 H 1.48502 * 109.46822 * 210.00610 * 19 17 15 22 22 H 1.48493 * 109.47249 * 330.00193 * 19 17 15 23 23 C 1.53043 * 109.53745 * 298.63748 * 14 13 12 24 24 C 1.46928 * 120.63306 * 174.91248 * 11 9 6 25 25 O 1.34294 * 125.79129 * 180.34208 * 2 1 3 26 26 H 1.09001 * 109.47228 * 90.00594 * 1 2 3 27 27 H 1.09004 * 109.47219 * 210.00257 * 1 2 3 28 28 H 1.08998 * 109.47658 * 330.00632 * 1 2 3 29 29 H 1.08003 * 126.58353 * 0.02562 * 3 2 1 30 30 H 1.08002 * 126.57791 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46600 * 181.24163 * 8 6 5 32 32 H 1.09002 * 109.47237 * 301.23826 * 8 6 5 33 33 H 1.09002 * 109.46794 * 61.23980 * 8 6 5 34 34 H 1.08995 * 109.58975 * 246.15934 * 12 11 9 35 35 H 1.09001 * 109.58676 * 6.58395 * 12 11 9 36 36 H 1.08998 * 109.49666 * 174.58857 * 13 12 11 37 37 H 1.08997 * 109.49768 * 294.68603 * 13 12 11 38 38 H 1.08999 * 109.46089 * 58.65284 * 14 13 12 39 39 H 0.97005 * 119.99630 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.49421 * 301.41106 * 23 14 13 41 41 H 1.09006 * 109.52149 * 181.33618 * 23 14 13 42 42 H 1.09003 * 109.58366 * 353.41735 * 24 11 9 43 43 H 1.08992 * 109.58871 * 113.69589 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2935 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6377 -0.0003 7 1 5.6885 -1.0500 -0.0009 8 6 4.7299 -2.5204 -1.2494 9 6 4.7308 -2.5067 1.2303 10 8 3.6730 -2.7330 1.7788 11 7 5.8705 -3.0323 1.7213 12 6 7.1430 -2.8596 1.0073 13 6 8.1734 -2.2652 1.9726 14 6 8.2670 -3.1480 3.2193 15 6 9.3043 -2.5847 4.1562 16 1 9.0233 -2.2826 5.1542 17 6 10.6121 -2.4550 3.7391 18 7 11.5174 -1.9640 4.5569 19 14 11.0982 -2.9782 2.0130 20 1 10.9496 -1.8271 1.0866 21 1 12.5115 -3.4340 2.0136 22 1 10.2200 -4.0893 1.5667 23 6 6.9090 -3.1838 3.9242 24 6 5.8644 -3.7885 2.9810 25 8 2.2924 -1.0893 -0.0065 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.9664 2.1205 0.0004 30 1 4.5211 1.2435 -0.0004 31 1 5.5780 -3.2050 -1.2383 32 1 3.8018 -3.0919 -1.2604 33 1 4.7809 -1.8930 -2.1394 34 1 7.4944 -3.8266 0.6476 35 1 7.0000 -2.1838 0.1640 36 1 9.1467 -2.2213 1.4840 37 1 7.8647 -1.2604 2.2607 38 1 8.5516 -4.1590 2.9279 39 1 12.4376 -1.8731 4.2636 40 1 6.6123 -2.1702 4.1939 41 1 6.9822 -3.7933 4.8250 42 1 4.8778 -3.7257 3.4401 43 1 6.1090 -4.8318 2.7821 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782055233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:45 Heat of formation + Delta-G solvation = -26.549084 kcal Electronic energy + Delta-G solvation = -23874.323896 eV Core-core repulsion = 20500.016681 eV Total energy + Delta-G solvation = -3374.307215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.60602 -39.99273 -37.16913 -34.48943 -33.48111 -33.12958 -31.64061 -31.11647 -30.45341 -26.69780 -26.56742 -24.30442 -22.75070 -22.47082 -21.76036 -20.55973 -19.68312 -18.58866 -17.19233 -16.71118 -16.65522 -16.06930 -15.41630 -15.08215 -14.62020 -14.40001 -13.92465 -13.58525 -13.50277 -13.28436 -13.11376 -13.07490 -12.82755 -12.75486 -12.61366 -12.22860 -12.12170 -12.09528 -11.93096 -11.66529 -11.54971 -11.06021 -10.76556 -10.22867 -10.20807 -9.86652 -9.79610 -9.53961 -9.34861 -9.12277 -8.60739 -8.29028 -8.22183 -6.12902 -4.12439 1.69581 2.54984 2.71390 2.97002 3.16886 3.23478 3.28271 3.33948 4.33223 4.39550 4.53329 4.75974 4.88698 4.95051 5.05524 5.13885 5.25841 5.27479 5.32050 5.44266 5.51655 5.53737 5.56956 5.63234 5.76840 5.77858 5.82609 5.88002 5.94542 5.99961 6.13326 6.15838 6.25858 6.52267 6.57479 6.60204 6.71731 6.85462 7.13742 7.22285 7.43616 7.64038 7.70116 8.34019 8.46641 8.91669 9.48704 11.00523 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.003898 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.041063 B = 7181.147110 C = 7316.158758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.017 4.017 3 C -0.215 4.215 4 C -0.206 4.206 5 C 0.012 3.988 6 C -0.033 4.033 7 H 0.123 0.877 8 C -0.142 4.142 9 C 0.517 3.483 10 O -0.538 6.538 11 N -0.600 5.600 12 C 0.098 3.902 13 C -0.137 4.137 14 C 0.015 3.985 15 C -0.513 4.513 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.265 1.265 23 C -0.113 4.113 24 C 0.110 3.890 25 O -0.153 6.153 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.264 0.736 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.122 2.122 -13.299 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.234 4.234 4 C -0.225 4.225 5 C -0.039 4.039 6 C -0.054 4.054 7 H 0.141 0.859 8 C -0.200 4.200 9 C 0.304 3.696 10 O -0.415 6.415 11 N -0.332 5.332 12 C -0.025 4.025 13 C -0.175 4.175 14 C -0.004 4.004 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.134 4.134 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.224 1.224 22 H -0.190 1.190 23 C -0.151 4.151 24 C -0.012 4.012 25 O -0.048 6.048 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.593 1.727 -12.965 21.128 hybrid contribution 0.796 0.168 -0.853 1.179 sum -15.797 1.895 -13.818 21.073 Atomic orbital electron populations 1.20269 0.85369 1.04016 1.03180 1.22439 0.94053 0.84399 1.05859 1.21490 0.92594 0.99234 1.10059 1.21544 0.98414 0.93487 1.09042 1.21557 0.82808 0.93348 1.06164 1.19963 0.94204 0.95543 0.95704 0.85949 1.21781 1.03569 0.99485 0.95140 1.20251 0.83793 0.80293 0.85243 1.90693 1.29515 1.60609 1.60685 1.48116 1.07394 1.53535 1.24195 1.22030 0.84081 1.01150 0.95216 1.22404 0.96360 1.01207 0.97530 1.19122 0.93336 0.95373 0.92541 1.21045 0.91776 1.41982 1.00328 0.90842 1.25057 0.96528 0.94566 0.97229 1.69902 1.02597 1.45431 1.35904 0.86868 0.77055 0.79231 0.85230 1.20502 1.22445 1.18959 1.21832 0.95047 1.00711 0.97545 1.21777 1.01075 0.94523 0.83832 1.84012 1.15891 1.34455 1.70485 0.90350 0.90532 0.89522 0.83652 0.83434 0.90951 0.91393 0.90925 0.91410 0.90658 0.92298 0.91518 0.95341 0.92634 0.92293 0.91250 0.89919 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.42 36.00 0.38 -0.23 16 2 C -0.02 -0.21 7.32 -35.63 -0.26 -0.47 16 3 C -0.21 -2.64 10.81 -39.70 -0.43 -3.07 16 4 C -0.21 -2.73 10.78 -39.70 -0.43 -3.15 16 5 C 0.01 0.18 5.45 -35.63 -0.19 -0.02 16 6 C -0.03 -0.44 2.27 -92.92 -0.21 -0.65 16 7 H 0.12 1.41 6.45 -51.93 -0.33 1.08 16 8 C -0.14 -1.53 8.96 37.16 0.33 -1.20 16 9 C 0.52 8.64 6.79 -10.99 -0.07 8.57 16 10 O -0.54 -10.77 15.25 -6.61 -0.10 -10.87 16 11 N -0.60 -9.88 2.97 -172.77 -0.51 -10.39 16 12 C 0.10 1.50 5.83 -3.71 -0.02 1.48 16 13 C -0.14 -2.66 4.85 -26.61 -0.13 -2.79 16 14 C 0.02 0.33 1.66 -91.73 -0.15 0.18 16 15 C -0.51 -13.83 9.14 -34.44 -0.31 -14.15 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 18 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 19 Si 0.89 20.65 24.38 -169.99 -4.14 16.51 16 20 H -0.28 -6.20 6.86 56.52 0.39 -5.81 16 21 H -0.30 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.26 -5.77 6.53 56.52 0.37 -5.40 16 23 C -0.11 -2.18 5.30 -26.61 -0.14 -2.33 16 24 C 0.11 1.87 6.42 -3.71 -0.02 1.84 16 25 O -0.15 -2.38 10.07 -6.44 -0.06 -2.44 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.07 0.70 7.36 -51.93 -0.38 0.32 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.93 5.10 -51.93 -0.26 0.66 16 36 H 0.06 1.20 3.24 -51.93 -0.17 1.03 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.43 7.04 -51.93 -0.37 1.07 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -32.82 338.78 -7.28 -40.10 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.56 Total: 2.32 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -1.77 Total: -14.19 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.26 Total: -36.53 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.17 Total: -13.31 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.14 Total: 16.51 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.82 -7.28 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782055233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.549 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds