Wall clock time and date at job start Tue Mar 31 2020 07:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34515 * 125.78517 * 2 1 4 4 C 1.41382 * 106.83759 * 180.02562 * 3 2 1 5 5 C 1.34514 * 106.84353 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.79063 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47339 * 359.97438 * 6 5 4 8 8 C 1.53009 * 109.46797 * 239.99864 * 6 5 4 9 9 C 1.50700 * 109.47290 * 120.00114 * 6 5 4 10 10 O 1.21280 * 119.99964 * 24.95749 * 9 6 5 11 11 N 1.34774 * 120.00050 * 204.95663 * 9 6 5 12 12 C 1.46926 * 120.63084 * 354.93351 * 11 9 6 13 13 C 1.53198 * 108.77570 * 126.36889 * 12 11 9 14 14 C 1.53041 * 109.31085 * 54.63548 * 13 12 11 15 15 C 1.50694 * 109.44846 * 178.62129 * 14 13 12 16 16 H 1.07998 * 120.00207 * 120.05919 * 15 14 13 17 17 C 1.37878 * 120.00091 * 300.06629 * 15 14 13 18 18 N 1.31514 * 119.99937 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99873 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 90.00394 * 19 17 15 21 21 H 1.48502 * 109.46822 * 210.00610 * 19 17 15 22 22 H 1.48493 * 109.47249 * 330.00193 * 19 17 15 23 23 C 1.53043 * 109.53745 * 298.63748 * 14 13 12 24 24 C 1.46928 * 120.63306 * 174.91248 * 11 9 6 25 25 O 1.34294 * 125.79129 * 180.34208 * 2 1 3 26 26 H 1.09001 * 109.47228 * 90.00594 * 1 2 3 27 27 H 1.09004 * 109.47219 * 210.00257 * 1 2 3 28 28 H 1.08998 * 109.47658 * 330.00632 * 1 2 3 29 29 H 1.08003 * 126.58353 * 0.02562 * 3 2 1 30 30 H 1.08002 * 126.57791 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46600 * 181.24163 * 8 6 5 32 32 H 1.09002 * 109.47237 * 301.23826 * 8 6 5 33 33 H 1.09002 * 109.46794 * 61.23980 * 8 6 5 34 34 H 1.08995 * 109.58975 * 246.15934 * 12 11 9 35 35 H 1.09001 * 109.58676 * 6.58395 * 12 11 9 36 36 H 1.08998 * 109.49666 * 174.58857 * 13 12 11 37 37 H 1.08997 * 109.49768 * 294.68603 * 13 12 11 38 38 H 1.08999 * 109.46089 * 58.65284 * 14 13 12 39 39 H 0.97005 * 119.99630 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.49421 * 301.41106 * 23 14 13 41 41 H 1.09006 * 109.52149 * 181.33618 * 23 14 13 42 42 H 1.09003 * 109.58366 * 353.41735 * 24 11 9 43 43 H 1.08992 * 109.58871 * 113.69589 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2935 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6377 -0.0003 7 1 5.6885 -1.0500 -0.0009 8 6 4.7299 -2.5204 -1.2494 9 6 4.7308 -2.5067 1.2303 10 8 3.6730 -2.7330 1.7788 11 7 5.8705 -3.0323 1.7213 12 6 7.1430 -2.8596 1.0073 13 6 8.1734 -2.2652 1.9726 14 6 8.2670 -3.1480 3.2193 15 6 9.3043 -2.5847 4.1562 16 1 9.0233 -2.2826 5.1542 17 6 10.6121 -2.4550 3.7391 18 7 11.5174 -1.9640 4.5569 19 14 11.0982 -2.9782 2.0130 20 1 10.9496 -1.8271 1.0866 21 1 12.5115 -3.4340 2.0136 22 1 10.2200 -4.0893 1.5667 23 6 6.9090 -3.1838 3.9242 24 6 5.8644 -3.7885 2.9810 25 8 2.2924 -1.0893 -0.0065 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.9664 2.1205 0.0004 30 1 4.5211 1.2435 -0.0004 31 1 5.5780 -3.2050 -1.2383 32 1 3.8018 -3.0919 -1.2604 33 1 4.7809 -1.8930 -2.1394 34 1 7.4944 -3.8266 0.6476 35 1 7.0000 -2.1838 0.1640 36 1 9.1467 -2.2213 1.4840 37 1 7.8647 -1.2604 2.2607 38 1 8.5516 -4.1590 2.9279 39 1 12.4376 -1.8731 4.2636 40 1 6.6123 -2.1702 4.1939 41 1 6.9822 -3.7933 4.8250 42 1 4.8778 -3.7257 3.4401 43 1 6.1090 -4.8318 2.7821 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782055233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:44 Heat of formation + Delta-G solvation = -46.476442 kcal Electronic energy + Delta-G solvation = -23875.188011 eV Core-core repulsion = 20500.016681 eV Total energy + Delta-G solvation = -3375.171330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.57788 -41.29713 -38.65291 -35.64330 -35.13814 -34.06865 -33.34579 -32.27426 -31.66258 -28.34677 -27.43537 -25.59711 -24.19691 -23.88572 -22.74020 -21.80650 -20.93061 -19.91122 -18.88738 -18.29089 -17.75852 -17.07846 -16.74257 -16.43332 -16.18159 -15.46010 -15.21519 -15.11124 -14.73370 -14.61070 -14.24226 -14.14339 -13.96158 -13.73627 -13.70578 -13.69576 -13.40563 -13.24895 -12.95907 -12.77150 -12.60846 -12.44696 -12.26620 -12.08701 -11.80561 -11.49498 -11.21897 -11.02310 -10.86917 -10.70687 -10.61215 -9.63603 -9.21601 -8.26420 -6.32110 0.71683 1.34011 1.42125 1.47535 1.53090 1.64912 1.98667 2.05857 2.37196 3.08568 3.39558 3.49248 3.86330 3.95244 4.02932 4.09770 4.14495 4.19244 4.21526 4.26694 4.43619 4.55316 4.56086 4.69235 4.70610 4.72206 4.77805 4.78846 4.85249 4.91367 4.94991 5.03584 5.04921 5.11256 5.16263 5.29020 5.37970 5.55235 5.65185 5.68442 5.75096 6.26691 6.32710 6.38198 6.75109 7.07195 7.33568 8.90829 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.003898 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.041063 B = 7181.147110 C = 7316.158758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.030 4.030 3 C -0.225 4.225 4 C -0.211 4.211 5 C -0.016 4.016 6 C -0.029 4.029 7 H 0.144 0.856 8 C -0.137 4.137 9 C 0.515 3.485 10 O -0.578 6.578 11 N -0.601 5.601 12 C 0.102 3.898 13 C -0.135 4.135 14 C 0.015 3.985 15 C -0.522 4.522 16 H 0.023 0.977 17 C 0.004 3.996 18 N -0.956 5.956 19 Si 0.953 3.047 20 H -0.256 1.256 21 H -0.306 1.306 22 H -0.232 1.232 23 C -0.106 4.106 24 C 0.117 3.883 25 O -0.180 6.180 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.170 0.830 30 H 0.165 0.835 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.265 0.735 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 1.959 -16.865 23.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.244 4.244 4 C -0.230 4.230 5 C -0.067 4.067 6 C -0.050 4.050 7 H 0.162 0.838 8 C -0.194 4.194 9 C 0.303 3.697 10 O -0.458 6.458 11 N -0.333 5.333 12 C -0.020 4.020 13 C -0.173 4.173 14 C -0.004 4.004 15 C -0.560 4.560 16 H 0.041 0.959 17 C -0.192 4.192 18 N -0.596 5.596 19 Si 0.778 3.222 20 H -0.181 1.181 21 H -0.234 1.234 22 H -0.155 1.155 23 C -0.145 4.145 24 C -0.005 4.005 25 O -0.077 6.077 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.125 0.875 29 H 0.187 0.813 30 H 0.182 0.818 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.448 1.567 -16.544 24.095 hybrid contribution 0.995 0.287 0.436 1.123 sum -16.454 1.854 -16.108 23.101 Atomic orbital electron populations 1.20461 0.82795 1.04813 1.04704 1.23284 0.95735 0.84037 1.05005 1.21867 0.92291 1.00374 1.09880 1.21907 0.99556 0.93392 1.08134 1.21898 0.82965 0.94147 1.07656 1.20074 0.94743 0.95376 0.94794 0.83840 1.21802 1.03498 0.99534 0.94604 1.20904 0.83030 0.79855 0.85873 1.90673 1.30995 1.61932 1.62159 1.48190 1.08010 1.53282 1.23856 1.22135 0.82028 1.02998 0.94792 1.22251 0.97762 1.00267 0.97038 1.19083 0.92651 0.95663 0.93000 1.21374 0.93586 1.41630 0.99437 0.95858 1.26059 0.96276 0.94514 1.02395 1.70088 1.03125 1.47672 1.38754 0.85788 0.76472 0.80480 0.79432 1.18116 1.23403 1.15519 1.21703 0.94858 0.99835 0.98060 1.21616 0.99588 0.95413 0.83891 1.83996 1.16674 1.35927 1.71123 0.88374 0.90949 0.87453 0.81278 0.81763 0.89223 0.92972 0.88759 0.89213 0.86774 0.92499 0.92649 0.94723 0.92666 0.94226 0.91715 0.90570 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.42 71.24 0.74 -0.33 16 2 C -0.03 -0.74 7.32 24.83 0.18 -0.55 16 3 C -0.23 -5.12 10.81 22.19 0.24 -4.88 16 4 C -0.21 -5.19 10.78 22.19 0.24 -4.95 16 5 C -0.02 -0.45 5.45 24.83 0.14 -0.31 16 6 C -0.03 -0.69 2.27 -12.28 -0.03 -0.72 16 7 H 0.14 2.73 6.45 -2.39 -0.02 2.71 16 8 C -0.14 -2.47 8.96 71.99 0.65 -1.83 16 9 C 0.51 16.23 6.79 87.66 0.60 16.83 16 10 O -0.58 -22.89 15.25 8.60 0.13 -22.76 16 11 N -0.60 -18.24 2.97 -818.92 -2.43 -20.68 16 12 C 0.10 2.69 5.83 86.36 0.50 3.19 16 13 C -0.14 -4.88 4.85 30.67 0.15 -4.73 16 14 C 0.01 0.64 1.66 -11.51 -0.02 0.62 16 15 C -0.52 -28.98 9.14 25.60 0.23 -28.75 16 16 H 0.02 1.47 7.99 -2.91 -0.02 1.44 16 17 C 0.00 0.21 5.45 84.66 0.46 0.67 16 18 N -0.96 -59.17 13.96 21.45 0.30 -58.87 16 19 Si 0.95 41.35 24.38 68.60 1.67 43.03 16 20 H -0.26 -10.15 6.86 99.48 0.68 -9.47 16 21 H -0.31 -13.67 7.11 99.48 0.71 -12.97 16 22 H -0.23 -8.80 6.53 99.48 0.65 -8.15 16 23 C -0.11 -4.12 5.30 30.67 0.16 -3.96 16 24 C 0.12 3.83 6.42 86.36 0.55 4.38 16 25 O -0.18 -5.48 10.07 9.19 0.09 -5.39 16 26 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.09 1.30 7.36 -2.39 -0.02 1.28 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.11 2.17 5.10 -2.39 -0.01 2.15 16 36 H 0.06 2.09 3.24 -2.39 -0.01 2.09 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 39 H 0.26 15.32 8.31 -92.70 -0.77 14.54 16 40 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 42 H 0.08 2.61 7.04 -2.39 -0.02 2.59 16 43 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -75.41 338.78 5.47 -69.94 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.92 Total: 20.05 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 4.80 Total: -25.32 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.13 Total: -79.54 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: 0.22 Total: -28.15 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.67 Total: 43.03 kcal Total: -75.41 5.47 -69.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782055233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.463 kcal (2) G-P(sol) polarization free energy of solvation -75.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds