Wall clock time and date at job start Tue Mar 31 2020 07:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00310 * 2 1 4 4 N 1.46903 * 109.47051 * 124.16641 * 3 2 1 5 5 C 1.46906 * 110.99808 * 301.53733 * 4 3 2 6 6 C 1.50699 * 109.47098 * 288.97434 * 5 4 3 7 7 H 1.07998 * 120.00361 * 354.86842 * 6 5 4 8 8 C 1.37879 * 120.00111 * 174.86877 * 6 5 4 9 9 N 1.31517 * 119.99784 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00508 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47069 * 90.00017 * 10 8 6 12 12 H 1.48496 * 109.47358 * 210.00169 * 10 8 6 13 13 H 1.48498 * 109.46962 * 330.00460 * 10 8 6 14 14 C 1.46894 * 111.00454 * 65.49129 * 4 3 2 15 15 C 1.50704 * 109.46997 * 66.04906 * 14 4 3 16 16 C 1.38290 * 119.99886 * 260.02572 * 15 14 4 17 17 C 1.38203 * 120.14799 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.92869 * 179.97438 * 17 16 15 19 19 C 1.38290 * 120.14802 * 0.02562 * 17 16 15 20 20 C 1.38529 * 119.99626 * 359.72723 * 19 17 16 21 21 O 1.35994 * 120.07466 * 180.27460 * 20 19 17 22 22 C 1.42894 * 117.00026 * 0.25279 * 21 20 19 23 23 C 1.38519 * 120.00423 * 80.00038 * 15 14 4 24 24 O 1.35997 * 120.06940 * 0.02562 * 23 15 14 25 25 H 1.07997 * 119.99837 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00180 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.00014 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.46833 * 4.16344 * 3 2 1 29 29 H 1.08996 * 109.47387 * 244.15993 * 3 2 1 30 30 H 1.09004 * 109.46738 * 48.97089 * 5 4 3 31 31 H 1.09000 * 109.47153 * 168.97162 * 5 4 3 32 32 H 0.96995 * 120.00505 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.47474 * 306.05081 * 14 4 3 34 34 H 1.09000 * 109.47330 * 186.04355 * 14 4 3 35 35 H 1.08001 * 119.92703 * 359.97080 * 16 15 14 36 36 H 1.09001 * 109.46759 * 89.99766 * 18 17 16 37 37 H 1.09003 * 109.46721 * 209.99326 * 18 17 16 38 38 H 1.08991 * 109.46975 * 329.99599 * 18 17 16 39 39 H 1.07991 * 120.00324 * 180.02562 * 19 17 16 40 40 H 1.08997 * 109.47220 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47318 * 300.00386 * 22 21 20 42 42 H 1.09006 * 109.47014 * 60.00008 * 22 21 20 43 43 H 0.96703 * 113.99558 * 90.00393 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9820 1.3402 1.1460 5 6 2.2516 1.1835 2.4109 6 6 1.4550 2.4322 2.6890 7 1 1.5517 3.2901 2.0402 8 6 0.6027 2.4793 3.7717 9 7 0.4845 1.4344 4.5616 10 14 -0.3842 4.0273 4.1169 11 1 -1.6876 3.9514 3.4094 12 1 -0.6204 4.1483 5.5780 13 1 0.3708 5.2128 3.6377 14 6 4.0293 0.3188 1.0129 15 6 4.9105 0.6531 -0.1631 16 6 4.7248 0.0076 -1.3719 17 6 5.5308 0.3122 -2.4524 18 6 5.3245 -0.3947 -3.7673 19 6 6.5269 1.2636 -2.3296 20 6 6.7149 1.9176 -1.1230 21 8 7.6903 2.8575 -1.0019 22 6 8.4812 3.1246 -2.1617 23 6 5.9060 1.6075 -0.0334 24 8 6.0899 2.2432 1.1547 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3576 2.1321 0.0746 29 1 2.6331 1.3958 -0.9249 30 1 1.5766 0.3308 2.3375 31 1 2.9608 1.0168 3.2217 32 1 -0.1148 1.4676 5.3235 33 1 3.5680 -0.6563 0.8556 34 1 4.6304 0.2941 1.9218 35 1 3.9482 -0.7363 -1.4717 36 1 4.6117 0.1651 -4.3728 37 1 6.2753 -0.4635 -4.2959 38 1 4.9373 -1.3969 -3.5840 39 1 7.1551 1.5001 -3.1755 40 1 9.2201 3.8914 -1.9289 41 1 8.9904 2.2123 -2.4723 42 1 7.8366 3.4737 -2.9685 43 1 6.7129 1.7990 1.7461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793559692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:41 Heat of formation + Delta-G solvation = -28.886365 kcal Electronic energy + Delta-G solvation = -23696.704040 eV Core-core repulsion = 20322.295472 eV Total energy + Delta-G solvation = -3374.408567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41349 -38.23768 -36.83116 -36.55910 -32.72575 -32.66586 -31.33603 -30.32279 -27.81579 -27.15751 -26.42939 -25.61571 -23.74919 -21.82682 -21.08633 -20.43064 -18.72994 -18.12261 -17.08693 -16.60195 -16.11141 -15.89126 -15.13574 -15.00042 -14.62679 -14.24134 -14.11247 -13.76982 -13.66318 -13.53426 -13.44492 -12.78684 -12.43493 -12.12603 -12.02529 -11.93056 -11.64773 -11.40463 -11.16628 -11.06886 -10.86836 -10.67906 -10.64937 -10.50173 -10.37631 -10.18010 -9.82660 -9.16338 -8.68441 -8.40863 -8.32069 -7.90184 -7.10709 -5.92854 -3.92513 1.35016 1.49942 2.95799 3.24992 3.37652 3.43753 3.49573 3.71320 4.46166 4.52134 4.73724 4.89075 4.98208 5.03601 5.15456 5.27012 5.35223 5.38418 5.42729 5.51522 5.51927 5.59216 5.60841 5.70223 5.82594 5.99772 6.01932 6.18157 6.25331 6.33834 6.47587 6.55651 6.69582 6.76690 6.85147 7.21960 7.32904 7.34573 7.41818 7.51260 7.91951 8.10579 8.19014 8.29262 8.65011 9.15454 9.70719 11.17807 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.004515 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.796852 B = 6199.802535 C = 7167.814182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 C 0.089 3.911 4 N -0.514 5.514 5 C 0.192 3.808 6 C -0.496 4.496 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.901 5.901 10 Si 0.893 3.107 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.095 3.905 15 C -0.049 4.049 16 C -0.136 4.136 17 C -0.063 4.063 18 C -0.111 4.111 19 C -0.204 4.204 20 C 0.099 3.901 21 O -0.308 6.308 22 C 0.028 3.972 23 C 0.096 3.904 24 O -0.467 6.467 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.005 0.995 31 H 0.023 0.977 32 H 0.259 0.741 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.103 -4.170 -15.588 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.199 4.199 3 C -0.039 4.039 4 N -0.237 5.237 5 C 0.067 3.933 6 C -0.535 4.535 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.541 5.541 10 Si 0.722 3.278 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.033 4.033 15 C -0.050 4.050 16 C -0.155 4.155 17 C -0.063 4.063 18 C -0.168 4.168 19 C -0.223 4.223 20 C 0.053 3.947 21 O -0.221 6.221 22 C -0.068 4.068 23 C 0.049 3.951 24 O -0.275 6.275 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.023 0.977 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.143 0.857 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 12.905 -3.216 -15.442 20.380 hybrid contribution -0.612 -0.412 0.271 0.786 sum 12.292 -3.628 -15.172 19.861 Atomic orbital electron populations 1.23673 0.96045 1.01050 1.00895 1.23523 0.96671 0.99723 0.99941 1.21265 0.94618 0.94220 0.93819 1.62417 1.12497 1.44764 1.03979 1.19774 0.92216 0.96988 0.84278 1.21123 1.22435 0.99360 1.10604 0.92045 1.24939 0.97087 0.96252 0.96222 1.69957 1.38353 1.29314 1.16456 0.86565 0.80283 0.83791 0.77206 1.20877 1.21382 1.19793 1.20884 0.93546 0.94055 0.94788 1.20162 0.95102 0.93541 0.96216 1.20785 1.00627 1.02220 0.91900 1.19592 0.94884 0.96111 0.95731 1.20756 1.02046 1.00009 0.93941 1.20879 1.03078 1.01719 0.96672 1.19455 0.89754 0.90930 0.94565 1.86162 1.44465 1.54646 1.36862 1.23018 0.94571 1.01161 0.88023 1.17521 0.95917 0.95854 0.85787 1.85049 1.66650 1.50340 1.25415 0.88523 0.89789 0.88823 0.89992 0.92030 0.97719 0.95928 0.93139 0.94664 0.90476 0.85858 0.91120 0.91893 0.91440 0.85663 0.88466 0.93011 0.92851 0.76828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 14.32 29.02 0.42 -2.83 16 2 C -0.18 -3.31 7.39 -36.02 -0.27 -3.58 16 3 C 0.09 1.79 5.43 -4.97 -0.03 1.76 16 4 N -0.51 -11.34 4.65 -238.96 -1.11 -12.45 16 5 C 0.19 5.04 4.57 -4.97 -0.02 5.02 16 6 C -0.50 -14.22 8.53 -34.44 -0.29 -14.52 16 7 H 0.06 1.78 7.61 -52.49 -0.40 1.39 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 10 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.10 1.75 4.60 -4.98 -0.02 1.73 16 15 C -0.05 -0.80 4.59 -104.50 -0.48 -1.28 16 16 C -0.14 -1.92 8.22 -39.57 -0.33 -2.24 16 17 C -0.06 -0.78 5.88 -104.61 -0.62 -1.39 16 18 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 19 C -0.20 -2.56 8.69 -39.45 -0.34 -2.91 16 20 C 0.10 1.46 6.70 -39.12 -0.26 1.20 16 21 O -0.31 -4.32 10.28 -34.20 -0.35 -4.67 16 22 C 0.03 0.25 9.81 101.05 0.99 1.24 16 23 C 0.10 1.59 6.69 -39.12 -0.26 1.33 16 24 O -0.47 -8.11 12.52 -34.21 -0.43 -8.54 16 25 H 0.10 1.81 7.84 -52.49 -0.41 1.40 16 26 H 0.08 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.09 1.61 6.84 -52.48 -0.36 1.25 16 28 H 0.08 1.80 7.01 -51.93 -0.36 1.44 16 29 H 0.06 1.14 6.33 -51.93 -0.33 0.82 16 30 H 0.01 0.14 6.68 -51.93 -0.35 -0.21 16 31 H 0.02 0.64 7.83 -51.93 -0.41 0.23 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.04 0.62 6.27 -51.93 -0.33 0.29 16 34 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 35 H 0.12 1.60 8.04 -52.49 -0.42 1.18 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 38 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 39 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.38 7.65 -51.93 -0.40 -0.01 16 42 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 43 H 0.38 4.75 9.06 45.56 0.41 5.16 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -33.28 354.03 -7.80 -41.08 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.71 Total: 3.98 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -1.25 Total: -15.60 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.38 Total: -38.78 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.78 Total: -13.21 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.28 -7.80 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793559692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.197 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds