Wall clock time and date at job start Tue Mar 31 2020 07:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00310 * 2 1 4 4 N 1.46903 * 109.47051 * 124.16641 * 3 2 1 5 5 C 1.46906 * 110.99808 * 301.53733 * 4 3 2 6 6 C 1.50699 * 109.47098 * 288.97434 * 5 4 3 7 7 H 1.07998 * 120.00361 * 354.86842 * 6 5 4 8 8 C 1.37879 * 120.00111 * 174.86877 * 6 5 4 9 9 N 1.31517 * 119.99784 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00508 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47069 * 90.00017 * 10 8 6 12 12 H 1.48496 * 109.47358 * 210.00169 * 10 8 6 13 13 H 1.48498 * 109.46962 * 330.00460 * 10 8 6 14 14 C 1.46894 * 111.00454 * 65.49129 * 4 3 2 15 15 C 1.50704 * 109.46997 * 66.04906 * 14 4 3 16 16 C 1.38290 * 119.99886 * 260.02572 * 15 14 4 17 17 C 1.38203 * 120.14799 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.92869 * 179.97438 * 17 16 15 19 19 C 1.38290 * 120.14802 * 0.02562 * 17 16 15 20 20 C 1.38529 * 119.99626 * 359.72723 * 19 17 16 21 21 O 1.35994 * 120.07466 * 180.27460 * 20 19 17 22 22 C 1.42894 * 117.00026 * 0.25279 * 21 20 19 23 23 C 1.38519 * 120.00423 * 80.00038 * 15 14 4 24 24 O 1.35997 * 120.06940 * 0.02562 * 23 15 14 25 25 H 1.07997 * 119.99837 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00180 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.00014 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.46833 * 4.16344 * 3 2 1 29 29 H 1.08996 * 109.47387 * 244.15993 * 3 2 1 30 30 H 1.09004 * 109.46738 * 48.97089 * 5 4 3 31 31 H 1.09000 * 109.47153 * 168.97162 * 5 4 3 32 32 H 0.96995 * 120.00505 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.47474 * 306.05081 * 14 4 3 34 34 H 1.09000 * 109.47330 * 186.04355 * 14 4 3 35 35 H 1.08001 * 119.92703 * 359.97080 * 16 15 14 36 36 H 1.09001 * 109.46759 * 89.99766 * 18 17 16 37 37 H 1.09003 * 109.46721 * 209.99326 * 18 17 16 38 38 H 1.08991 * 109.46975 * 329.99599 * 18 17 16 39 39 H 1.07991 * 120.00324 * 180.02562 * 19 17 16 40 40 H 1.08997 * 109.47220 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47318 * 300.00386 * 22 21 20 42 42 H 1.09006 * 109.47014 * 60.00008 * 22 21 20 43 43 H 0.96703 * 113.99558 * 90.00393 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9820 1.3402 1.1460 5 6 2.2516 1.1835 2.4109 6 6 1.4550 2.4322 2.6890 7 1 1.5517 3.2901 2.0402 8 6 0.6027 2.4793 3.7717 9 7 0.4845 1.4344 4.5616 10 14 -0.3842 4.0273 4.1169 11 1 -1.6876 3.9514 3.4094 12 1 -0.6204 4.1483 5.5780 13 1 0.3708 5.2128 3.6377 14 6 4.0293 0.3188 1.0129 15 6 4.9105 0.6531 -0.1631 16 6 4.7248 0.0076 -1.3719 17 6 5.5308 0.3122 -2.4524 18 6 5.3245 -0.3947 -3.7673 19 6 6.5269 1.2636 -2.3296 20 6 6.7149 1.9176 -1.1230 21 8 7.6903 2.8575 -1.0019 22 6 8.4812 3.1246 -2.1617 23 6 5.9060 1.6075 -0.0334 24 8 6.0899 2.2432 1.1547 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3576 2.1321 0.0746 29 1 2.6331 1.3958 -0.9249 30 1 1.5766 0.3308 2.3375 31 1 2.9608 1.0168 3.2217 32 1 -0.1148 1.4676 5.3235 33 1 3.5680 -0.6563 0.8556 34 1 4.6304 0.2941 1.9218 35 1 3.9482 -0.7363 -1.4717 36 1 4.6117 0.1651 -4.3728 37 1 6.2753 -0.4635 -4.2959 38 1 4.9373 -1.3969 -3.5840 39 1 7.1551 1.5001 -3.1755 40 1 9.2201 3.8914 -1.9289 41 1 8.9904 2.2123 -2.4723 42 1 7.8366 3.4737 -2.9685 43 1 6.7129 1.7990 1.7461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793559692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:40 Heat of formation + Delta-G solvation = -51.638678 kcal Electronic energy + Delta-G solvation = -23697.690654 eV Core-core repulsion = 20322.295472 eV Total energy + Delta-G solvation = -3375.395182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49832 -39.49261 -38.27408 -37.69565 -34.83178 -34.05905 -32.63439 -31.50945 -29.06680 -28.58005 -27.79821 -26.69973 -25.57043 -22.87452 -22.82876 -21.71316 -20.21956 -19.32116 -18.34568 -18.05196 -17.71355 -16.97937 -16.78969 -16.20135 -16.07080 -16.06129 -15.39002 -15.01752 -14.99777 -14.64951 -14.32478 -14.16488 -13.98593 -13.46915 -13.12538 -13.09661 -12.98051 -12.75923 -12.72133 -12.59393 -12.36135 -12.23681 -12.18149 -12.06604 -11.87305 -11.65955 -11.42534 -11.18056 -10.57066 -10.17268 -9.53870 -8.97069 -8.86100 -8.14785 -6.23181 0.25891 0.42074 1.39658 1.41135 1.47522 1.52901 2.33893 2.42605 2.64082 3.17160 3.38079 3.54583 3.80593 3.90141 4.08630 4.15973 4.25862 4.33729 4.38160 4.40895 4.41466 4.53883 4.65522 4.68476 4.73631 4.84941 4.88742 4.94680 4.98240 5.10325 5.20322 5.24647 5.27772 5.38179 5.48946 5.64429 5.68830 5.73483 5.81577 5.93741 6.14554 6.38476 6.43316 6.68892 6.92221 7.00659 7.45217 8.95107 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.004515 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.796852 B = 6199.802535 C = 7167.814182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.184 4.184 3 C 0.095 3.905 4 N -0.527 5.527 5 C 0.211 3.789 6 C -0.513 4.513 7 H 0.051 0.949 8 C 0.008 3.992 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.271 1.271 14 C 0.101 3.899 15 C -0.065 4.065 16 C -0.142 4.142 17 C -0.057 4.057 18 C -0.109 4.109 19 C -0.197 4.197 20 C 0.091 3.909 21 O -0.333 6.333 22 C 0.017 3.983 23 C 0.066 3.934 24 O -0.494 6.494 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.056 0.944 29 H 0.079 0.921 30 H -0.014 1.014 31 H -0.007 1.007 32 H 0.263 0.737 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.157 0.843 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.592 -4.339 -18.094 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.204 4.204 3 C -0.033 4.033 4 N -0.250 5.250 5 C 0.086 3.914 6 C -0.551 4.551 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.196 1.196 14 C -0.027 4.027 15 C -0.066 4.066 16 C -0.161 4.161 17 C -0.057 4.057 18 C -0.166 4.166 19 C -0.216 4.216 20 C 0.045 3.955 21 O -0.247 6.247 22 C -0.077 4.077 23 C 0.020 3.980 24 O -0.304 6.304 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.004 0.996 31 H 0.012 0.988 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.175 0.825 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 13.413 -3.391 -17.972 22.681 hybrid contribution -0.649 -0.360 0.973 1.224 sum 12.764 -3.752 -16.999 21.586 Atomic orbital electron populations 1.23832 0.96085 1.01689 1.00121 1.23503 0.96856 0.99471 1.00567 1.21151 0.94178 0.94340 0.93610 1.62257 1.13000 1.46847 1.02851 1.19358 0.91087 0.95355 0.85648 1.21356 1.23158 0.99854 1.10781 0.93107 1.25747 0.98026 0.99392 0.95841 1.70067 1.39037 1.31239 1.16899 0.85531 0.78932 0.79760 0.77307 1.19710 1.20625 1.19609 1.20803 0.92671 0.93411 0.95778 1.19966 0.95351 0.95000 0.96259 1.20942 1.01341 1.02220 0.91548 1.19999 0.93630 0.95454 0.96601 1.20838 1.03560 1.00123 0.92059 1.21250 1.03044 1.00675 0.96609 1.19536 0.89890 0.91354 0.94706 1.86127 1.44666 1.54417 1.39485 1.23355 0.94635 1.02755 0.86921 1.17802 0.97253 0.96844 0.86115 1.84981 1.67484 1.51435 1.26482 0.89640 0.87443 0.87112 0.92598 0.90332 0.99649 0.98845 0.92852 0.93813 0.91675 0.84819 0.90194 0.89788 0.90490 0.82527 0.86676 0.91104 0.91908 0.75379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.42 14.32 67.79 0.97 -5.45 16 2 C -0.18 -6.77 7.39 25.65 0.19 -6.58 16 3 C 0.09 3.88 5.43 85.56 0.46 4.34 16 4 N -0.53 -24.04 4.65 -909.93 -4.24 -28.28 16 5 C 0.21 11.58 4.57 85.56 0.39 11.97 16 6 C -0.51 -30.29 8.53 25.60 0.22 -30.07 16 7 H 0.05 3.04 7.61 -2.91 -0.02 3.02 16 8 C 0.01 0.46 5.46 84.65 0.46 0.92 16 9 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 10 Si 0.96 46.03 29.54 68.60 2.03 48.05 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 14 C 0.10 3.82 4.60 85.56 0.39 4.22 16 15 C -0.06 -2.11 4.59 -19.78 -0.09 -2.20 16 16 C -0.14 -3.76 8.22 22.27 0.18 -3.58 16 17 C -0.06 -1.24 5.88 -19.86 -0.12 -1.35 16 18 C -0.11 -1.53 10.01 71.24 0.71 -0.81 16 19 C -0.20 -4.39 8.69 22.35 0.19 -4.20 16 20 C 0.09 2.61 6.70 22.57 0.15 2.76 16 21 O -0.33 -9.01 10.28 -79.65 -0.82 -9.83 16 22 C 0.02 0.27 9.81 113.37 1.11 1.38 16 23 C 0.07 2.22 6.69 22.57 0.15 2.37 16 24 O -0.49 -18.03 12.52 -79.68 -1.00 -19.03 16 25 H 0.09 3.23 7.84 -2.91 -0.02 3.21 16 26 H 0.11 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.11 3.67 6.84 -2.91 -0.02 3.65 16 28 H 0.06 2.54 7.01 -2.39 -0.02 2.52 16 29 H 0.08 2.90 6.33 -2.39 -0.02 2.89 16 30 H -0.01 -0.82 6.68 -2.38 -0.02 -0.83 16 31 H -0.01 -0.39 7.83 -2.39 -0.02 -0.41 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.04 1.55 6.27 -2.39 -0.01 1.54 16 34 H 0.06 2.55 7.58 -2.39 -0.02 2.53 16 35 H 0.13 3.19 8.04 -2.91 -0.02 3.17 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 38 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 39 H 0.16 2.42 6.30 -2.91 -0.02 2.41 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 0.82 7.65 -2.39 -0.02 0.80 16 42 H 0.06 0.85 7.67 -2.38 -0.02 0.83 16 43 H 0.39 10.68 9.06 -74.06 -0.67 10.00 16 Total: -1.00 -73.25 354.03 1.98 -71.27 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.34 Total: 20.78 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 5.39 Total: -26.29 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -3.95 Total: -84.96 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -1.82 Total: -28.85 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -73.25 1.98 -71.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793559692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.633 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds