Wall clock time and date at job start Tue Mar 31 2020 06:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35970 * 116.99705 * 2 1 4 4 C 1.38556 * 120.08360 * 359.97137 * 3 2 1 5 5 C 1.38240 * 120.01399 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.18194 * 359.97438 * 5 4 3 7 7 C 1.38201 * 120.15989 * 359.72602 * 6 5 4 8 8 C 1.50703 * 120.00677 * 180.27346 * 7 6 5 9 9 C 1.38723 * 119.98441 * 0.55103 * 7 6 5 10 10 N 1.40124 * 120.08925 * 179.72526 * 9 7 6 11 11 C 1.34773 * 120.00468 * 95.27013 * 10 9 7 12 12 O 1.21298 * 119.99803 * 354.97928 * 11 10 9 13 13 C 1.50701 * 120.00380 * 175.25421 * 11 10 9 14 14 C 1.52989 * 109.47165 * 179.72806 * 13 11 10 15 15 C 1.53003 * 109.47132 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47337 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.46975 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00361 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99749 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00268 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47096 * 60.00072 * 21 19 17 23 23 H 1.48501 * 109.47200 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46864 * 299.99854 * 21 19 17 25 25 H 1.08991 * 109.47287 * 300.00470 * 1 2 3 26 26 H 1.09005 * 109.46684 * 60.00636 * 1 2 3 27 27 H 1.09004 * 109.46528 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99275 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.91306 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.92124 * 180.02562 * 6 5 4 31 31 H 1.08996 * 109.47078 * 270.27486 * 8 7 6 32 32 H 1.09002 * 109.46726 * 30.27809 * 8 7 6 33 33 H 1.09002 * 109.46886 * 150.27455 * 8 7 6 34 34 H 0.97007 * 119.99505 * 275.27491 * 10 9 7 35 35 H 1.09004 * 109.46707 * 299.72724 * 13 11 10 36 36 H 1.09001 * 109.46649 * 59.72305 * 13 11 10 37 37 H 1.09004 * 109.47241 * 299.99591 * 14 13 11 38 38 H 1.09000 * 109.47552 * 59.99655 * 14 13 11 39 39 H 1.09004 * 109.46680 * 299.99882 * 15 14 13 40 40 H 1.08998 * 109.47292 * 59.99942 * 15 14 13 41 41 H 1.09010 * 109.46769 * 299.99852 * 16 15 14 42 42 H 1.08998 * 109.47026 * 59.99719 * 16 15 14 43 43 H 0.96994 * 120.00181 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 -0.0006 5 6 1.9223 3.6056 -0.0011 6 6 3.3031 3.6808 -0.0005 7 6 4.0614 2.5254 0.0063 8 6 5.5659 2.6113 0.0132 9 6 3.4372 1.2865 0.0010 10 7 4.2039 0.1136 0.0022 11 6 4.4777 -0.5115 1.1643 12 8 4.1391 -0.0115 2.2163 13 6 5.2101 -1.8286 1.1573 14 6 5.3975 -2.3156 2.5955 15 6 6.1416 -3.6525 2.5883 16 6 6.3285 -4.1398 4.0266 17 6 7.0619 -5.4562 4.0195 18 1 7.3641 -5.9010 3.0829 19 6 7.3472 -6.0929 5.2088 20 7 6.9788 -5.5515 6.3493 21 14 8.2556 -7.7250 5.2000 22 1 9.5839 -7.5488 4.5599 23 1 8.4372 -8.1980 6.5959 24 1 7.4674 -8.7261 4.4373 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 0.2147 2.3195 -0.0006 29 1 1.3338 4.5111 -0.0012 30 1 3.7901 4.6447 -0.0005 31 1 5.9332 2.6340 -1.0128 32 1 5.8755 3.5196 0.5302 33 1 5.9771 1.7425 0.5271 34 1 4.5377 -0.2484 -0.8337 35 1 4.6311 -2.5632 0.5975 36 1 6.1850 -1.6996 0.6873 37 1 5.9765 -1.5810 3.1553 38 1 4.4225 -2.4444 3.0655 39 1 5.5630 -4.3872 2.0284 40 1 7.1166 -3.5232 2.1185 41 1 6.9069 -3.4051 4.5869 42 1 5.3533 -4.2692 4.4959 43 1 7.1798 -5.9991 7.1860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808779381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:12 Heat of formation + Delta-G solvation = -72.421105 kcal Electronic energy + Delta-G solvation = -22542.637394 eV Core-core repulsion = 19166.341019 eV Total energy + Delta-G solvation = -3376.296375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87672 -39.21068 -37.80931 -35.02617 -34.57322 -32.60056 -32.30088 -30.30033 -29.19066 -27.75300 -26.81537 -25.54307 -23.13394 -21.96370 -21.35561 -20.26268 -19.91488 -18.15041 -17.31234 -16.76495 -16.66688 -16.10965 -15.84728 -15.41938 -14.97037 -14.44755 -14.39165 -14.04552 -13.83933 -13.67680 -13.54066 -12.60206 -12.51755 -12.42241 -12.19371 -12.15220 -11.86742 -11.64075 -11.58316 -11.33239 -11.21954 -10.93363 -10.50757 -10.47235 -10.35976 -9.81153 -9.56717 -9.36456 -9.19325 -8.98263 -8.87575 -8.38388 -8.26901 -5.91834 -3.94304 0.98039 1.17981 2.77825 2.99583 3.18592 3.37587 3.41760 3.44129 3.47206 4.51609 4.53665 4.58254 4.76479 4.87789 4.90707 5.03941 5.05215 5.10669 5.24537 5.34671 5.39333 5.42265 5.43214 5.45291 5.50175 5.84856 5.92569 5.99161 6.11891 6.19917 6.26143 6.36008 6.39275 6.58159 6.65798 6.89631 7.07509 7.18973 7.24832 7.45213 7.77808 7.94621 8.10017 8.37450 8.51719 9.13360 9.69019 11.19527 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027237 B = 0.002629 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.769823 B =10647.176076 C =11158.699002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.139 3.861 4 C -0.213 4.213 5 C -0.074 4.074 6 C -0.155 4.155 7 C -0.040 4.040 8 C -0.113 4.113 9 C 0.105 3.895 10 N -0.684 5.684 11 C 0.518 3.482 12 O -0.523 6.523 13 C -0.136 4.136 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.405 0.595 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.141 18.914 -18.982 29.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.092 3.908 4 C -0.232 4.232 5 C -0.092 4.092 6 C -0.174 4.174 7 C -0.042 4.042 8 C -0.170 4.170 9 C 0.013 3.987 10 N -0.336 5.336 11 C 0.307 3.693 12 O -0.397 6.397 13 C -0.176 4.176 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.242 0.758 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.301 18.996 -17.988 28.498 hybrid contribution 0.219 -0.917 -0.320 0.996 sum -11.083 18.079 -18.308 28.015 Atomic orbital electron populations 1.23089 0.78354 1.04177 1.01193 1.86149 1.21309 1.26354 1.88132 1.19302 0.91522 0.84762 0.95241 1.21127 1.00029 0.92049 1.10000 1.20943 0.94557 0.96941 0.96764 1.20852 0.93628 0.97671 1.05207 1.19963 0.96631 0.91387 0.96169 1.20753 0.90416 1.03451 1.02395 1.16627 0.86571 0.86694 1.08846 1.43327 1.54939 1.25270 1.10065 1.21212 0.78668 0.86570 0.82873 1.90717 1.51773 1.66396 1.30791 1.21781 1.00683 0.93091 1.02053 1.21451 1.01748 0.98397 0.92506 1.21648 0.98114 0.93788 1.01200 1.19090 0.96943 0.95636 0.90025 1.21254 1.36532 1.05774 0.92304 0.92806 1.25045 0.96091 0.97735 0.95709 1.69966 1.47086 1.39100 0.97365 0.86671 0.80310 0.84190 0.76881 1.20287 1.21338 1.20299 0.92565 0.92712 0.88072 0.85227 0.85577 0.85520 0.90778 0.91059 0.91082 0.75794 0.88936 0.89099 0.91830 0.91825 0.93477 0.93466 0.96606 0.96614 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.82 10.24 -19.65 -0.20 -4.02 16 3 C 0.14 1.72 6.70 -39.07 -0.26 1.46 16 4 C -0.21 -2.13 9.04 -39.46 -0.36 -2.48 16 5 C -0.07 -0.66 10.04 -39.56 -0.40 -1.05 16 6 C -0.15 -1.46 9.69 -39.58 -0.38 -1.84 16 7 C -0.04 -0.44 5.89 -104.45 -0.62 -1.06 16 8 C -0.11 -1.05 9.76 36.01 0.35 -0.69 16 9 C 0.10 1.32 5.28 -83.49 -0.44 0.88 16 10 N -0.68 -8.21 4.03 -9.75 -0.04 -8.25 16 11 C 0.52 7.91 7.46 -10.99 -0.08 7.83 16 12 O -0.52 -10.37 15.96 5.54 0.09 -10.28 16 13 C -0.14 -1.91 5.70 -27.89 -0.16 -2.07 16 14 C -0.10 -1.92 4.50 -26.74 -0.12 -2.04 16 15 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 16 C 0.02 0.54 4.97 -27.89 -0.14 0.41 16 17 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.89 13.29 55.43 0.74 -27.15 16 21 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 29 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.07 0.77 7.18 -51.93 -0.37 0.40 16 34 H 0.41 3.54 8.83 -40.82 -0.36 3.18 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.26 8.10 -51.93 -0.42 0.83 16 38 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -36.22 362.18 -8.03 -44.24 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.89 Total: -1.21 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.16 Total: -15.91 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.70 Total: -35.40 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.11 Total: -14.30 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.22 -8.03 -44.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808779381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.176 kcal (2) G-P(sol) polarization free energy of solvation -36.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds