Wall clock time and date at job start Tue Mar 31 2020 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35970 * 116.99705 * 2 1 4 4 C 1.38556 * 120.08360 * 359.97137 * 3 2 1 5 5 C 1.38240 * 120.01399 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.18194 * 359.97438 * 5 4 3 7 7 C 1.38201 * 120.15989 * 359.72602 * 6 5 4 8 8 C 1.50703 * 120.00677 * 180.27346 * 7 6 5 9 9 C 1.38723 * 119.98441 * 0.55103 * 7 6 5 10 10 N 1.40124 * 120.08925 * 179.72526 * 9 7 6 11 11 C 1.34773 * 120.00468 * 95.27013 * 10 9 7 12 12 O 1.21298 * 119.99803 * 354.97928 * 11 10 9 13 13 C 1.50701 * 120.00380 * 175.25421 * 11 10 9 14 14 C 1.52989 * 109.47165 * 179.72806 * 13 11 10 15 15 C 1.53003 * 109.47132 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47337 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.46975 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00361 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99749 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00268 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47096 * 60.00072 * 21 19 17 23 23 H 1.48501 * 109.47200 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46864 * 299.99854 * 21 19 17 25 25 H 1.08991 * 109.47287 * 300.00470 * 1 2 3 26 26 H 1.09005 * 109.46684 * 60.00636 * 1 2 3 27 27 H 1.09004 * 109.46528 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99275 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.91306 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.92124 * 180.02562 * 6 5 4 31 31 H 1.08996 * 109.47078 * 270.27486 * 8 7 6 32 32 H 1.09002 * 109.46726 * 30.27809 * 8 7 6 33 33 H 1.09002 * 109.46886 * 150.27455 * 8 7 6 34 34 H 0.97007 * 119.99505 * 275.27491 * 10 9 7 35 35 H 1.09004 * 109.46707 * 299.72724 * 13 11 10 36 36 H 1.09001 * 109.46649 * 59.72305 * 13 11 10 37 37 H 1.09004 * 109.47241 * 299.99591 * 14 13 11 38 38 H 1.09000 * 109.47552 * 59.99655 * 14 13 11 39 39 H 1.09004 * 109.46680 * 299.99882 * 15 14 13 40 40 H 1.08998 * 109.47292 * 59.99942 * 15 14 13 41 41 H 1.09010 * 109.46769 * 299.99852 * 16 15 14 42 42 H 1.08998 * 109.47026 * 59.99719 * 16 15 14 43 43 H 0.96994 * 120.00181 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 -0.0006 5 6 1.9223 3.6056 -0.0011 6 6 3.3031 3.6808 -0.0005 7 6 4.0614 2.5254 0.0063 8 6 5.5659 2.6113 0.0132 9 6 3.4372 1.2865 0.0010 10 7 4.2039 0.1136 0.0022 11 6 4.4777 -0.5115 1.1643 12 8 4.1391 -0.0115 2.2163 13 6 5.2101 -1.8286 1.1573 14 6 5.3975 -2.3156 2.5955 15 6 6.1416 -3.6525 2.5883 16 6 6.3285 -4.1398 4.0266 17 6 7.0619 -5.4562 4.0195 18 1 7.3641 -5.9010 3.0829 19 6 7.3472 -6.0929 5.2088 20 7 6.9788 -5.5515 6.3493 21 14 8.2556 -7.7250 5.2000 22 1 9.5839 -7.5488 4.5599 23 1 8.4372 -8.1980 6.5959 24 1 7.4674 -8.7261 4.4373 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 0.2147 2.3195 -0.0006 29 1 1.3338 4.5111 -0.0012 30 1 3.7901 4.6447 -0.0005 31 1 5.9332 2.6340 -1.0128 32 1 5.8755 3.5196 0.5302 33 1 5.9771 1.7425 0.5271 34 1 4.5377 -0.2484 -0.8337 35 1 4.6311 -2.5632 0.5975 36 1 6.1850 -1.6996 0.6873 37 1 5.9765 -1.5810 3.1553 38 1 4.4225 -2.4444 3.0655 39 1 5.5630 -4.3872 2.0284 40 1 7.1166 -3.5232 2.1185 41 1 6.9069 -3.4051 4.5869 42 1 5.3533 -4.2692 4.4959 43 1 7.1798 -5.9991 7.1860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808779381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:11 Heat of formation + Delta-G solvation = -95.353347 kcal Electronic energy + Delta-G solvation = -22543.631811 eV Core-core repulsion = 19166.341019 eV Total energy + Delta-G solvation = -3377.290792 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.75921 -40.27044 -38.62105 -36.67357 -35.71838 -34.60574 -33.09788 -31.73463 -30.39464 -28.43545 -27.81921 -27.10309 -24.60650 -23.13545 -22.23267 -21.73274 -21.32720 -18.98269 -18.41679 -18.21924 -17.76681 -17.55759 -16.70734 -16.61221 -16.50471 -15.75610 -15.47997 -15.06274 -14.85658 -14.62550 -14.52423 -14.44215 -13.73417 -13.60306 -13.31908 -13.19400 -13.08924 -12.84178 -12.79359 -12.64704 -12.37493 -12.16569 -12.13283 -12.06890 -11.90925 -11.38036 -11.36050 -11.18598 -10.87123 -10.54092 -10.37862 -9.68844 -9.16925 -8.18139 -6.30587 0.20679 0.40759 1.40409 1.44802 1.52600 1.62339 2.15657 2.33524 2.42649 2.71710 3.14322 3.76606 3.85320 3.94558 4.03592 4.13727 4.16014 4.32671 4.33091 4.35764 4.39678 4.58351 4.66773 4.68349 4.70492 4.76387 4.81008 4.82653 4.87923 5.15225 5.18338 5.24587 5.33243 5.36101 5.39381 5.49829 5.56409 5.62109 5.78176 5.83313 5.88228 6.25607 6.40374 6.48217 6.87713 7.29892 7.38952 8.94091 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027237 B = 0.002629 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.769823 B =10647.176076 C =11158.699002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.116 3.884 4 C -0.219 4.219 5 C -0.071 4.071 6 C -0.159 4.159 7 C -0.054 4.054 8 C -0.111 4.111 9 C 0.070 3.930 10 N -0.664 5.664 11 C 0.519 3.481 12 O -0.579 6.579 13 C -0.125 4.125 14 C -0.094 4.094 15 C -0.095 4.095 16 C 0.019 3.981 17 C -0.543 4.543 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.970 3.030 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.264 1.264 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.150 0.850 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.421 0.579 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.063 0.937 41 H -0.015 1.015 42 H -0.017 1.017 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.917 19.131 -21.451 30.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.069 3.931 4 C -0.238 4.238 5 C -0.089 4.089 6 C -0.178 4.178 7 C -0.055 4.055 8 C -0.168 4.168 9 C -0.022 4.022 10 N -0.315 5.315 11 C 0.308 3.692 12 O -0.457 6.457 13 C -0.165 4.165 14 C -0.133 4.133 15 C -0.132 4.132 16 C -0.018 4.018 17 C -0.581 4.581 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.794 3.206 22 H -0.188 1.188 23 H -0.211 1.211 24 H -0.189 1.189 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.130 0.870 28 H 0.168 0.832 29 H 0.176 0.824 30 H 0.169 0.831 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.260 0.740 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.003 0.997 42 H 0.001 0.999 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.081 19.221 -20.531 30.228 hybrid contribution 0.074 -0.894 0.449 1.003 sum -11.007 18.327 -20.082 29.332 Atomic orbital electron populations 1.23321 0.76571 1.05308 1.02259 1.86090 1.23356 1.26948 1.88399 1.19589 0.91831 0.85534 0.96184 1.21452 1.01131 0.91778 1.09413 1.21376 0.94764 0.97728 0.95061 1.21221 0.94074 0.98184 1.04283 1.20261 0.97650 0.91454 0.96164 1.20771 0.89442 1.02952 1.03590 1.16985 0.87141 0.87180 1.10907 1.43061 1.53808 1.24909 1.09732 1.21346 0.78128 0.86750 0.82926 1.90694 1.54333 1.67858 1.32860 1.21663 1.02823 0.92992 0.98978 1.21234 0.99648 0.96805 0.95575 1.21445 0.99567 0.95036 0.97175 1.19046 0.94451 0.94874 0.93401 1.21729 1.36721 1.06557 0.93052 0.91509 1.26111 0.96957 1.02204 0.95160 1.70130 1.48411 1.41155 0.98215 0.85423 0.79238 0.78753 0.77161 1.18817 1.21055 1.18913 0.92445 0.90600 0.87034 0.83198 0.82414 0.83055 0.88630 0.90067 0.93123 0.73980 0.86518 0.85834 0.93759 0.94241 0.92133 0.91812 0.99701 0.99877 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 16 2 O -0.33 -8.31 10.24 -93.22 -0.95 -9.26 16 3 C 0.12 2.83 6.70 22.60 0.15 2.98 16 4 C -0.22 -4.07 9.04 22.35 0.20 -3.87 16 5 C -0.07 -1.11 10.04 22.28 0.22 -0.89 16 6 C -0.16 -2.69 9.69 22.27 0.22 -2.47 16 7 C -0.05 -1.14 5.89 -19.76 -0.12 -1.26 16 8 C -0.11 -1.93 9.76 71.24 0.70 -1.23 16 9 C 0.07 1.75 5.28 38.19 0.20 1.95 16 10 N -0.66 -15.64 4.03 -303.13 -1.22 -16.86 16 11 C 0.52 15.93 7.46 87.66 0.65 16.58 16 12 O -0.58 -23.93 15.96 -3.09 -0.05 -23.98 16 13 C -0.13 -3.37 5.70 29.84 0.17 -3.20 16 14 C -0.09 -3.60 4.50 30.59 0.14 -3.46 16 15 C -0.09 -3.99 5.15 30.60 0.16 -3.83 16 16 C 0.02 1.09 4.97 29.85 0.15 1.24 16 17 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 18 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 19 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 20 N -0.94 -59.94 13.29 21.45 0.28 -59.66 16 21 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 25 H 0.06 0.84 7.66 -2.39 -0.02 0.83 16 26 H 0.08 0.81 7.66 -2.38 -0.02 0.79 16 27 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.15 2.01 6.30 -2.91 -0.02 1.99 16 29 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 33 H 0.05 1.08 7.18 -2.39 -0.02 1.07 16 34 H 0.42 6.83 8.83 -92.70 -0.82 6.02 16 35 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 36 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 38 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 39 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 41 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 42 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 43 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -81.98 362.18 4.91 -77.07 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.18 Total: 13.14 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 4.65 Total: -27.76 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -0.94 Total: -76.52 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.00 Total: -33.25 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -81.98 4.91 -77.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808779381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.286 kcal (2) G-P(sol) polarization free energy of solvation -81.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds