Wall clock time and date at job start Tue Mar 31 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47298 * 180.02562 * 10 9 8 12 12 C 1.34777 * 120.00270 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99769 * 0.02562 * 12 11 10 14 14 C 1.50691 * 120.00000 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.47051 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47253 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99673 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00035 * 179.97438 * 16 15 14 19 19 N 1.31526 * 120.00074 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00262 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.46867 * 90.00016 * 20 18 16 22 22 H 1.48498 * 109.47190 * 210.00402 * 20 18 16 23 23 H 1.48501 * 109.46775 * 330.00106 * 20 18 16 24 24 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 28 28 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 30 30 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 31 31 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 32 32 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 33 33 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 34 34 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 35 35 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 36 36 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 37 37 H 0.97001 * 119.99560 * 359.97438 * 11 10 9 38 38 H 1.09000 * 109.47602 * 299.99839 * 14 12 11 39 39 H 1.09000 * 109.47596 * 60.00218 * 14 12 11 40 40 H 1.08998 * 109.47125 * 299.99690 * 15 14 12 41 41 H 1.08997 * 109.47520 * 60.00067 * 15 14 12 42 42 H 0.96989 * 119.99683 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.03255 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 7 8.3693 -4.9785 -0.0249 12 6 9.7057 -5.1532 -0.0260 13 8 10.4431 -4.1903 -0.0205 14 6 10.2837 -6.5448 -0.0327 15 6 11.8115 -6.4625 -0.0320 16 6 12.3896 -7.8543 -0.0394 17 1 11.7329 -8.7117 -0.0446 18 6 13.7566 -8.0329 -0.0406 19 7 14.2612 -9.2475 -0.0475 20 14 14.8924 -6.5499 -0.0338 21 1 15.1937 -6.1637 1.3680 22 1 16.1558 -6.8907 -0.7358 23 1 14.2305 -5.4164 -0.7282 24 6 2.1970 -1.1966 -0.0058 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.6565 2.1324 -0.0004 29 1 4.1176 2.1381 0.0098 30 1 5.3552 0.0102 0.0002 31 1 6.0278 -1.7576 -0.8990 32 1 6.0280 -1.7669 0.8810 33 1 5.9445 -4.2448 0.8688 34 1 5.9443 -4.2363 -0.9111 35 1 8.1428 -3.0886 -0.9050 36 1 8.1423 -3.0974 0.8749 37 1 7.7795 -5.7486 -0.0289 38 1 9.9487 -7.0818 0.8547 39 1 9.9484 -7.0732 -0.9252 40 1 12.1469 -5.9256 -0.9192 41 1 12.1465 -5.9344 0.8607 42 1 15.2229 -9.3731 -0.0488 43 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812451664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:18 Heat of formation + Delta-G solvation = -75.547185 kcal Electronic energy + Delta-G solvation = -21264.917010 eV Core-core repulsion = 17888.485077 eV Total energy + Delta-G solvation = -3376.431932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53868 -39.32877 -38.14857 -35.53367 -33.48035 -32.92527 -32.37694 -31.22697 -30.20077 -27.48476 -26.82833 -25.15892 -22.99832 -22.32117 -21.33614 -21.06498 -19.62232 -18.16468 -17.19143 -16.76085 -16.60050 -16.29423 -15.86726 -15.54222 -15.40587 -14.62840 -14.45135 -14.10071 -13.95669 -13.83284 -13.60117 -13.13781 -12.88823 -12.58585 -12.55643 -12.36631 -12.31279 -11.95846 -11.83779 -11.65957 -11.41652 -11.14397 -11.01011 -10.94763 -10.17170 -10.05203 -9.78931 -9.28149 -9.18231 -9.17557 -8.94294 -8.55422 -8.50694 -6.03058 -4.01874 0.92571 1.07636 2.66169 3.09345 3.36805 3.37792 3.44256 3.50502 3.55225 4.38844 4.40525 4.48400 4.50871 4.61014 4.66164 4.69521 4.85691 4.94192 4.99972 5.10231 5.11106 5.17230 5.31583 5.32400 5.33118 5.43741 5.52379 5.68714 5.73226 5.83887 5.94052 6.05438 6.07437 6.09271 6.19696 6.39327 6.55161 6.68900 7.05401 7.36015 7.43145 7.72123 7.79271 8.49553 8.62449 8.99941 9.59978 11.09753 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.053309 B = 0.001859 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.111120 B =15062.135761 C =15545.591234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.162 4.162 4 C -0.076 4.076 5 C -0.215 4.215 6 C 0.136 3.864 7 O -0.314 6.314 8 C 0.063 3.937 9 C -0.130 4.130 10 C 0.123 3.877 11 N -0.742 5.742 12 C 0.510 3.490 13 O -0.541 6.541 14 C -0.122 4.122 15 C 0.001 3.999 16 C -0.526 4.526 17 H 0.073 0.927 18 C 0.069 3.931 19 N -0.903 5.903 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C -0.155 4.155 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.563 19.471 0.085 34.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.180 4.180 4 C -0.094 4.094 5 C -0.234 4.234 6 C 0.091 3.909 7 O -0.228 6.228 8 C -0.012 4.012 9 C -0.168 4.168 10 C -0.002 4.002 11 N -0.396 5.396 12 C 0.299 3.701 13 O -0.417 6.417 14 C -0.162 4.162 15 C -0.037 4.037 16 C -0.563 4.563 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.174 4.174 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.902 19.876 0.081 34.257 hybrid contribution 0.607 0.486 0.038 0.778 sum -27.295 20.361 0.119 34.053 Atomic orbital electron populations 1.20819 0.90707 1.03040 1.02628 1.19721 0.96090 0.92274 0.96848 1.20954 0.94182 0.97572 1.05301 1.20952 0.94187 0.97479 0.96780 1.21303 1.00488 0.92287 1.09328 1.18988 0.91729 0.84672 0.95515 1.86040 1.20170 1.28174 1.88419 1.22688 0.77994 0.98502 1.02046 1.21693 0.94572 0.95933 1.04597 1.21041 0.90934 0.85628 1.02557 1.46111 1.07673 1.07958 1.77904 1.21561 0.80998 0.93307 0.74235 1.90654 1.59172 1.43164 1.48678 1.21672 1.00362 0.90764 1.03419 1.19374 0.88939 0.97708 0.97666 1.21118 0.92389 0.91480 1.51353 0.90918 1.24973 0.98242 0.95694 0.94325 1.69914 1.12440 1.20810 1.51062 0.86792 0.80113 0.83904 0.78728 1.20254 1.21429 1.18549 1.20306 0.90888 0.98686 1.07512 0.90832 0.91269 0.91263 0.85973 0.85725 0.85347 0.91492 0.91500 0.89964 0.89959 0.91500 0.91493 0.76548 0.89542 0.89516 0.95826 0.96269 0.92721 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.01 36.01 0.36 -0.20 16 2 C -0.05 -0.37 5.88 -104.64 -0.62 -0.99 16 3 C -0.16 -1.18 9.70 -39.56 -0.38 -1.56 16 4 C -0.08 -0.58 10.04 -39.61 -0.40 -0.97 16 5 C -0.22 -1.85 9.04 -39.44 -0.36 -2.21 16 6 C 0.14 1.32 6.69 -39.22 -0.26 1.05 16 7 O -0.31 -3.11 10.14 -19.45 -0.20 -3.31 16 8 C 0.06 0.51 4.74 37.15 0.18 0.68 16 9 C -0.13 -1.04 5.70 -26.74 -0.15 -1.19 16 10 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 11 N -0.74 -9.44 5.56 -60.30 -0.34 -9.78 16 12 C 0.51 9.15 7.83 -10.99 -0.09 9.06 16 13 O -0.54 -11.91 15.98 5.56 0.09 -11.82 16 14 C -0.12 -2.35 5.64 -27.89 -0.16 -2.50 16 15 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 16 C -0.53 -15.07 9.66 -34.44 -0.33 -15.40 16 17 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 20 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 24 C -0.16 -1.36 9.64 -39.43 -0.38 -1.74 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 27 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 29 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 30 H 0.13 0.94 6.30 -52.48 -0.33 0.61 16 31 H 0.07 0.49 7.66 -51.93 -0.40 0.09 16 32 H 0.07 0.49 7.66 -51.92 -0.40 0.09 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 3.90 8.47 -40.82 -0.35 3.56 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 41 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -35.07 361.30 -8.58 -43.65 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.89 Total: -2.11 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -2.80 Total: -12.79 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.44 Total: -37.05 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.11 Total: -15.13 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.07 -8.58 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812451664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.897 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds