Wall clock time and date at job start Tue Mar 31 2020 06:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47298 * 180.02562 * 10 9 8 12 12 C 1.34777 * 120.00270 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99769 * 0.02562 * 12 11 10 14 14 C 1.50691 * 120.00000 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.47051 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47253 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99673 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00035 * 179.97438 * 16 15 14 19 19 N 1.31526 * 120.00074 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00262 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.46867 * 90.00016 * 20 18 16 22 22 H 1.48498 * 109.47190 * 210.00402 * 20 18 16 23 23 H 1.48501 * 109.46775 * 330.00106 * 20 18 16 24 24 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 28 28 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 30 30 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 31 31 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 32 32 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 33 33 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 34 34 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 35 35 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 36 36 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 37 37 H 0.97001 * 119.99560 * 359.97438 * 11 10 9 38 38 H 1.09000 * 109.47602 * 299.99839 * 14 12 11 39 39 H 1.09000 * 109.47596 * 60.00218 * 14 12 11 40 40 H 1.08998 * 109.47125 * 299.99690 * 15 14 12 41 41 H 1.08997 * 109.47520 * 60.00067 * 15 14 12 42 42 H 0.96989 * 119.99683 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.03255 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 7 8.3693 -4.9785 -0.0249 12 6 9.7057 -5.1532 -0.0260 13 8 10.4431 -4.1903 -0.0205 14 6 10.2837 -6.5448 -0.0327 15 6 11.8115 -6.4625 -0.0320 16 6 12.3896 -7.8543 -0.0394 17 1 11.7329 -8.7117 -0.0446 18 6 13.7566 -8.0329 -0.0406 19 7 14.2612 -9.2475 -0.0475 20 14 14.8924 -6.5499 -0.0338 21 1 15.1937 -6.1637 1.3680 22 1 16.1558 -6.8907 -0.7358 23 1 14.2305 -5.4164 -0.7282 24 6 2.1970 -1.1966 -0.0058 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.6565 2.1324 -0.0004 29 1 4.1176 2.1381 0.0098 30 1 5.3552 0.0102 0.0002 31 1 6.0278 -1.7576 -0.8990 32 1 6.0280 -1.7669 0.8810 33 1 5.9445 -4.2448 0.8688 34 1 5.9443 -4.2363 -0.9111 35 1 8.1428 -3.0886 -0.9050 36 1 8.1423 -3.0974 0.8749 37 1 7.7795 -5.7486 -0.0289 38 1 9.9487 -7.0818 0.8547 39 1 9.9484 -7.0732 -0.9252 40 1 12.1469 -5.9256 -0.9192 41 1 12.1465 -5.9344 0.8607 42 1 15.2229 -9.3731 -0.0488 43 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812451664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:17 Heat of formation + Delta-G solvation = -97.987268 kcal Electronic energy + Delta-G solvation = -21265.890085 eV Core-core repulsion = 17888.485077 eV Total energy + Delta-G solvation = -3377.405007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16155 -40.68642 -38.76999 -36.61100 -35.52041 -33.61412 -33.40436 -32.92535 -30.89597 -28.48551 -27.86812 -26.36647 -23.62453 -23.36228 -22.68749 -21.86643 -21.04131 -19.20753 -18.77081 -17.57805 -17.46698 -17.25755 -16.84303 -16.62092 -16.58575 -16.20695 -15.47291 -15.19367 -14.86197 -14.59058 -14.55600 -14.31998 -14.17644 -14.13222 -13.41663 -13.23882 -13.12357 -12.96659 -12.89147 -12.56253 -12.40611 -12.36975 -12.09538 -11.96486 -11.76315 -11.71596 -11.61709 -11.39816 -10.80327 -10.78012 -10.10155 -9.74941 -9.16342 -8.31413 -6.34386 0.35077 0.47711 1.33290 1.35259 1.50220 1.68100 1.90392 2.35086 2.47826 2.78688 3.04312 3.78196 3.84755 3.87657 3.90271 4.04070 4.08868 4.16537 4.32591 4.35532 4.40060 4.41382 4.47027 4.51124 4.53565 4.63038 4.83822 4.86168 4.97804 5.00238 5.02514 5.09843 5.24155 5.32926 5.35834 5.45269 5.47352 5.49277 5.61558 5.65215 5.85834 6.23577 6.42703 6.57912 6.72241 7.30103 7.31211 8.84211 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.053309 B = 0.001859 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.111120 B =15062.135761 C =15545.591234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.168 4.168 4 C -0.083 4.083 5 C -0.228 4.228 6 C 0.115 3.885 7 O -0.328 6.328 8 C 0.062 3.938 9 C -0.116 4.116 10 C 0.123 3.877 11 N -0.719 5.719 12 C 0.515 3.485 13 O -0.587 6.587 14 C -0.118 4.118 15 C 0.004 3.996 16 C -0.530 4.530 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.943 5.943 20 Si 0.939 3.061 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.261 1.261 24 C -0.173 4.173 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.418 0.582 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.010 0.990 41 H 0.009 0.991 42 H 0.267 0.733 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.185 21.133 0.131 36.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.186 4.186 4 C -0.101 4.101 5 C -0.247 4.247 6 C 0.070 3.930 7 O -0.242 6.242 8 C -0.014 4.014 9 C -0.154 4.154 10 C -0.001 4.001 11 N -0.373 5.373 12 C 0.303 3.697 13 O -0.467 6.467 14 C -0.157 4.157 15 C -0.034 4.034 16 C -0.568 4.568 17 H 0.069 0.931 18 C -0.184 4.184 19 N -0.584 5.584 20 Si 0.763 3.237 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.192 4.192 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.161 0.839 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.255 0.745 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -29.589 21.522 0.128 36.589 hybrid contribution 0.994 -0.052 0.024 0.995 sum -28.595 21.470 0.152 35.758 Atomic orbital electron populations 1.20873 0.88926 1.03899 1.03379 1.20071 0.97508 0.91965 0.95964 1.21294 0.94337 0.98406 1.04548 1.21274 0.94665 0.97970 0.96181 1.21496 1.01077 0.92423 1.09684 1.19234 0.92222 0.84923 0.96618 1.85993 1.20817 1.28668 1.88747 1.22719 0.77477 0.98503 1.02665 1.21528 0.92274 0.96238 1.05324 1.21130 0.92620 0.84100 1.02241 1.45846 1.06145 1.09786 1.75513 1.21181 0.82397 0.91946 0.74192 1.90641 1.60662 1.44085 1.51312 1.21503 0.96642 0.92425 1.05169 1.19234 0.92957 0.94856 0.96387 1.21450 0.92367 0.92679 1.50318 0.93130 1.25809 1.00065 0.98290 0.94268 1.70027 1.13062 1.22796 1.52515 0.85824 0.78359 0.80377 0.79125 1.19386 1.20353 1.18567 1.20533 0.90917 0.99489 1.08213 0.90020 0.90000 0.90862 0.83889 0.83800 0.84582 0.90940 0.90939 0.89231 0.89235 0.91893 0.91859 0.74487 0.87821 0.87844 0.97180 0.97287 0.92396 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 71.24 0.71 -0.20 16 2 C -0.05 -0.76 5.88 -19.88 -0.12 -0.88 16 3 C -0.17 -2.16 9.70 22.28 0.22 -1.94 16 4 C -0.08 -1.14 10.04 22.25 0.22 -0.92 16 5 C -0.23 -3.73 9.04 22.36 0.20 -3.53 16 6 C 0.12 2.16 6.69 22.51 0.15 2.31 16 7 O -0.33 -6.23 10.14 -92.52 -0.94 -7.16 16 8 C 0.06 0.91 4.74 71.98 0.34 1.25 16 9 C -0.12 -1.61 5.70 30.59 0.17 -1.44 16 10 C 0.12 2.42 5.67 86.38 0.49 2.91 16 11 N -0.72 -16.73 5.56 -463.08 -2.57 -19.30 16 12 C 0.51 17.72 7.83 87.65 0.69 18.40 16 13 O -0.59 -25.49 15.98 -3.03 -0.05 -25.53 16 14 C -0.12 -4.36 5.64 29.85 0.17 -4.19 16 15 C 0.00 0.18 3.33 29.85 0.10 0.28 16 16 C -0.53 -30.62 9.66 25.60 0.25 -30.37 16 17 H 0.05 3.07 7.99 -2.91 -0.02 3.04 16 18 C 0.01 0.79 5.47 84.65 0.46 1.26 16 19 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 20 Si 0.94 46.84 27.47 68.60 1.88 48.73 16 21 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 23 H -0.26 -12.96 6.54 99.48 0.65 -12.31 16 24 C -0.17 -2.95 9.64 22.37 0.22 -2.73 16 25 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 26 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 27 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 28 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 29 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 30 H 0.14 1.87 6.30 -2.91 -0.02 1.85 16 31 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 32 H 0.07 0.97 7.66 -2.38 -0.02 0.95 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.42 6.93 8.47 -92.71 -0.79 6.14 16 38 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.01 0.51 7.15 -2.39 -0.02 0.50 16 41 H 0.01 0.45 7.53 -2.39 -0.02 0.43 16 42 H 0.27 15.65 8.31 -92.72 -0.77 14.88 16 43 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -75.71 361.30 3.05 -72.66 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.15 Total: 9.25 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 4.27 Total: -19.79 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.27 Total: -78.16 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.99 Total: -32.70 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.88 Total: 48.73 kcal Total: -75.71 3.05 -72.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812451664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.326 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds