Wall clock time and date at job start Tue Mar 31 2020 06:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38267 * 119.94354 * 2 1 4 4 C 1.38151 * 120.05677 * 180.02562 * 3 2 1 5 5 C 1.38733 * 119.94004 * 0.02562 * 4 3 2 6 6 O 1.35904 * 120.05128 * 180.02562 * 5 4 3 7 7 C 1.42903 * 116.99628 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46726 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46952 * 174.99897 * 8 7 6 10 10 C 1.52997 * 109.47427 * 54.99735 * 8 7 6 11 11 N 1.46506 * 109.46901 * 294.99552 * 8 7 6 12 12 C 1.34780 * 119.99797 * 204.99914 * 11 8 7 13 13 O 1.21280 * 120.00012 * 0.02562 * 12 11 8 14 14 C 1.50698 * 119.99835 * 180.02562 * 12 11 8 15 15 C 1.52997 * 109.47270 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47318 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00125 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00227 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99982 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00312 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47072 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47251 * 119.99783 * 20 18 16 23 23 H 1.48499 * 109.47269 * 239.99659 * 20 18 16 24 24 C 1.38730 * 119.89273 * 0.27301 * 5 4 3 25 25 C 1.38148 * 119.94252 * 359.43082 * 24 5 4 26 26 H 1.08998 * 109.47334 * 89.99716 * 1 2 3 27 27 H 1.09003 * 109.47389 * 209.99875 * 1 2 3 28 28 H 1.08998 * 109.47489 * 329.99906 * 1 2 3 29 29 H 1.08003 * 119.97499 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.02823 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47382 * 59.99787 * 7 6 5 32 32 H 1.09001 * 109.46938 * 299.99774 * 7 6 5 33 33 H 1.09001 * 109.47187 * 300.00018 * 10 8 7 34 34 H 1.09003 * 109.46799 * 60.00212 * 10 8 7 35 35 H 1.09004 * 109.47198 * 179.97438 * 10 8 7 36 36 H 0.96996 * 119.99732 * 25.00286 * 11 8 7 37 37 H 1.08998 * 109.46950 * 300.00445 * 14 12 11 38 38 H 1.09002 * 109.46917 * 60.00367 * 14 12 11 39 39 H 1.09007 * 109.46773 * 300.00366 * 15 14 12 40 40 H 1.08997 * 109.47312 * 59.99641 * 15 14 12 41 41 H 0.96999 * 120.00535 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.03088 * 179.72386 * 24 5 4 43 43 H 1.07993 * 119.97527 * 180.27495 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6325 0.0001 -0.0016 7 6 6.2812 -1.2732 -0.0033 8 6 7.7980 -1.0727 -0.0024 9 1 8.2923 -2.0402 0.0859 10 6 8.1947 -0.1874 1.1807 11 7 8.2061 -0.4281 -1.2532 12 6 9.4607 -0.5921 -1.7176 13 8 10.2516 -1.2735 -1.1004 14 6 9.8806 0.0714 -3.0039 15 6 11.3409 -0.2738 -3.3027 16 6 11.7610 0.3902 -4.5886 17 1 11.0568 0.9973 -5.1381 18 6 13.0441 0.2218 -5.0643 19 7 13.9015 -0.5179 -4.3955 20 14 13.5647 1.0442 -6.6586 21 1 12.4233 1.8151 -7.2136 22 1 14.7009 1.9630 -6.3937 23 1 13.9837 0.0080 -7.6363 24 6 3.5786 -1.2008 -0.0079 25 6 2.1972 -1.1981 -0.0011 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6558 2.1327 -0.0004 30 1 4.1172 2.1369 -0.0001 31 1 5.9883 -1.8291 -0.8940 32 1 5.9883 -1.8314 0.8860 33 1 7.7004 0.7800 1.0924 34 1 7.8911 -0.6671 2.1112 35 1 9.2754 -0.0449 1.1815 36 1 7.5734 0.1166 -1.7469 37 1 9.2496 -0.2836 -3.8187 38 1 9.7749 1.1519 -2.9067 39 1 11.9721 0.0810 -2.4879 40 1 11.4463 -1.3542 -3.3999 41 1 14.8044 -0.6361 -4.7299 42 1 4.1172 -2.1368 -0.0132 43 1 1.6558 -2.1326 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812485762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:41 Heat of formation + Delta-G solvation = -74.127089 kcal Electronic energy + Delta-G solvation = -22124.740943 eV Core-core repulsion = 18748.370591 eV Total energy + Delta-G solvation = -3376.370352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52598 -39.28301 -38.01058 -35.26625 -33.42248 -32.30022 -31.45822 -31.29345 -30.23448 -27.40121 -26.29634 -25.66699 -23.27680 -22.20809 -21.60530 -20.47623 -19.71154 -18.47133 -16.95995 -16.59943 -16.10008 -15.70136 -15.61700 -15.21710 -14.80382 -14.65209 -14.39213 -14.01622 -13.83061 -13.76877 -13.35531 -13.16802 -12.80075 -12.45433 -12.39867 -12.17205 -11.98222 -11.82913 -11.69258 -11.17233 -11.14037 -11.08153 -10.95241 -10.92193 -10.56080 -9.93622 -9.64599 -9.30449 -9.15054 -8.98182 -8.80486 -8.31758 -8.30593 -5.94597 -3.98710 1.04199 1.12822 2.88821 3.28194 3.33741 3.40472 3.43696 3.44925 3.54213 4.39223 4.49043 4.54480 4.59933 4.65059 4.78143 4.92098 4.98977 5.05323 5.17911 5.27082 5.32839 5.40381 5.41379 5.42460 5.58194 5.60172 5.73416 5.77553 5.99470 6.01384 6.06629 6.25426 6.28536 6.30638 6.30813 6.49207 6.75648 6.92582 7.15403 7.76688 7.88547 7.92532 8.09085 8.40909 8.80221 9.10207 9.64752 11.16395 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.002459 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.792767 B =11384.372306 C =12074.106606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.130 4.130 3 C -0.081 4.081 4 C -0.148 4.148 5 C 0.129 3.871 6 O -0.308 6.308 7 C 0.052 3.948 8 C 0.147 3.853 9 H 0.104 0.896 10 C -0.161 4.161 11 N -0.738 5.738 12 C 0.511 3.489 13 O -0.536 6.536 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.206 4.206 25 C -0.081 4.081 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.401 0.599 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.128 0.872 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.254 0.431 11.345 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.130 4.130 3 C -0.099 4.099 4 C -0.167 4.167 5 C 0.083 3.917 6 O -0.222 6.222 7 C -0.024 4.024 8 C 0.042 3.958 9 H 0.122 0.878 10 C -0.220 4.220 11 N -0.393 5.393 12 C 0.300 3.700 13 O -0.411 6.411 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.225 4.225 25 C -0.099 4.099 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.235 0.765 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.146 0.854 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -26.333 0.013 11.792 28.853 hybrid contribution 0.001 0.399 -1.077 1.148 sum -26.332 0.412 10.716 28.432 Atomic orbital electron populations 1.20714 0.91161 1.02553 1.02148 1.19832 0.96201 0.93095 1.03885 1.20855 0.93021 0.97763 0.98304 1.20464 0.93756 0.96467 1.06017 1.19029 0.82505 0.94092 0.96057 1.86097 1.16035 1.31700 1.88341 1.23213 0.92624 0.84298 1.02228 1.20942 0.90311 0.98701 0.85889 0.87844 1.22109 1.02720 1.00478 0.96670 1.46264 1.14333 1.53933 1.24750 1.21577 0.80503 0.80316 0.87602 1.90661 1.51458 1.39322 1.59679 1.21866 1.02917 1.00186 0.92054 1.18900 0.87041 0.97634 0.96493 1.21268 0.96998 1.30726 1.07400 0.92557 1.25033 0.96753 0.95387 0.97307 1.70008 1.05246 1.38865 1.38753 0.86533 0.78565 0.79252 0.83594 1.19756 1.21026 1.21040 1.21277 0.95391 0.97197 1.08604 1.20826 0.93310 0.97678 0.98065 0.91439 0.91793 0.91717 0.85479 0.85087 0.91193 0.90722 0.91680 0.92188 0.91583 0.76515 0.90293 0.90212 0.95824 0.95846 0.93031 0.85438 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.01 36.00 0.36 -0.24 16 2 C -0.13 -1.03 5.88 -104.60 -0.62 -1.64 16 3 C -0.08 -0.66 9.69 -39.60 -0.38 -1.04 16 4 C -0.15 -1.40 9.99 -39.43 -0.39 -1.79 16 5 C 0.13 1.31 6.69 -39.22 -0.26 1.04 16 6 O -0.31 -3.28 8.99 -19.44 -0.17 -3.45 16 7 C 0.05 0.49 4.48 37.16 0.17 0.66 16 8 C 0.15 1.80 2.98 -67.93 -0.20 1.60 16 9 H 0.10 1.38 7.58 -51.93 -0.39 0.98 16 10 C -0.16 -1.96 9.29 37.16 0.35 -1.62 16 11 N -0.74 -10.59 5.06 -53.80 -0.27 -10.86 16 12 C 0.51 9.87 7.79 -10.98 -0.09 9.79 16 13 O -0.54 -12.52 15.64 5.56 0.09 -12.43 16 14 C -0.13 -2.69 5.64 -27.89 -0.16 -2.84 16 15 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 16 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 20 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.21 -1.85 9.04 -39.43 -0.36 -2.21 16 25 C -0.08 -0.66 9.69 -39.60 -0.38 -1.04 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.30 8.09 -51.93 -0.42 -0.12 16 28 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.07 0.62 7.65 -51.93 -0.40 0.22 16 32 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 33 H 0.06 0.78 7.56 -51.93 -0.39 0.39 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.40 4.95 8.38 -40.82 -0.34 4.61 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -34.31 362.28 -8.54 -42.85 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.86 Total: 0.79 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -2.50 Total: -12.28 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.46 Total: -37.78 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.09 Total: -15.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.31 -8.54 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812485762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.276 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds