Wall clock time and date at job start Tue Mar 31 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38267 * 119.94354 * 2 1 4 4 C 1.38151 * 120.05677 * 180.02562 * 3 2 1 5 5 C 1.38733 * 119.94004 * 0.02562 * 4 3 2 6 6 O 1.35904 * 120.05128 * 180.02562 * 5 4 3 7 7 C 1.42903 * 116.99628 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46726 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46952 * 174.99897 * 8 7 6 10 10 C 1.52997 * 109.47427 * 54.99735 * 8 7 6 11 11 N 1.46506 * 109.46901 * 294.99552 * 8 7 6 12 12 C 1.34780 * 119.99797 * 204.99914 * 11 8 7 13 13 O 1.21280 * 120.00012 * 0.02562 * 12 11 8 14 14 C 1.50698 * 119.99835 * 180.02562 * 12 11 8 15 15 C 1.52997 * 109.47270 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47318 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00125 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00227 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99982 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00312 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47072 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47251 * 119.99783 * 20 18 16 23 23 H 1.48499 * 109.47269 * 239.99659 * 20 18 16 24 24 C 1.38730 * 119.89273 * 0.27301 * 5 4 3 25 25 C 1.38148 * 119.94252 * 359.43082 * 24 5 4 26 26 H 1.08998 * 109.47334 * 89.99716 * 1 2 3 27 27 H 1.09003 * 109.47389 * 209.99875 * 1 2 3 28 28 H 1.08998 * 109.47489 * 329.99906 * 1 2 3 29 29 H 1.08003 * 119.97499 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.02823 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47382 * 59.99787 * 7 6 5 32 32 H 1.09001 * 109.46938 * 299.99774 * 7 6 5 33 33 H 1.09001 * 109.47187 * 300.00018 * 10 8 7 34 34 H 1.09003 * 109.46799 * 60.00212 * 10 8 7 35 35 H 1.09004 * 109.47198 * 179.97438 * 10 8 7 36 36 H 0.96996 * 119.99732 * 25.00286 * 11 8 7 37 37 H 1.08998 * 109.46950 * 300.00445 * 14 12 11 38 38 H 1.09002 * 109.46917 * 60.00367 * 14 12 11 39 39 H 1.09007 * 109.46773 * 300.00366 * 15 14 12 40 40 H 1.08997 * 109.47312 * 59.99641 * 15 14 12 41 41 H 0.96999 * 120.00535 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.03088 * 179.72386 * 24 5 4 43 43 H 1.07993 * 119.97527 * 180.27495 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6325 0.0001 -0.0016 7 6 6.2812 -1.2732 -0.0033 8 6 7.7980 -1.0727 -0.0024 9 1 8.2923 -2.0402 0.0859 10 6 8.1947 -0.1874 1.1807 11 7 8.2061 -0.4281 -1.2532 12 6 9.4607 -0.5921 -1.7176 13 8 10.2516 -1.2735 -1.1004 14 6 9.8806 0.0714 -3.0039 15 6 11.3409 -0.2738 -3.3027 16 6 11.7610 0.3902 -4.5886 17 1 11.0568 0.9973 -5.1381 18 6 13.0441 0.2218 -5.0643 19 7 13.9015 -0.5179 -4.3955 20 14 13.5647 1.0442 -6.6586 21 1 12.4233 1.8151 -7.2136 22 1 14.7009 1.9630 -6.3937 23 1 13.9837 0.0080 -7.6363 24 6 3.5786 -1.2008 -0.0079 25 6 2.1972 -1.1981 -0.0011 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6558 2.1327 -0.0004 30 1 4.1172 2.1369 -0.0001 31 1 5.9883 -1.8291 -0.8940 32 1 5.9883 -1.8314 0.8860 33 1 7.7004 0.7800 1.0924 34 1 7.8911 -0.6671 2.1112 35 1 9.2754 -0.0449 1.1815 36 1 7.5734 0.1166 -1.7469 37 1 9.2496 -0.2836 -3.8187 38 1 9.7749 1.1519 -2.9067 39 1 11.9721 0.0810 -2.4879 40 1 11.4463 -1.3542 -3.3999 41 1 14.8044 -0.6361 -4.7299 42 1 4.1172 -2.1368 -0.0132 43 1 1.6558 -2.1326 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812485762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:40 Heat of formation + Delta-G solvation = -95.690573 kcal Electronic energy + Delta-G solvation = -22125.676006 eV Core-core repulsion = 18748.370591 eV Total energy + Delta-G solvation = -3377.305415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31276 -40.62180 -38.80097 -36.47749 -35.53293 -33.34174 -32.79761 -31.97445 -31.65260 -28.18712 -27.70876 -26.86757 -24.33728 -23.56999 -22.45313 -21.53244 -21.23496 -19.22699 -18.82243 -17.64900 -17.47757 -16.80530 -16.49718 -16.46110 -16.25658 -16.03125 -15.32160 -14.94265 -14.64877 -14.55327 -14.40125 -14.37118 -14.20144 -13.96582 -13.39194 -13.23404 -13.10244 -12.89538 -12.84844 -12.59371 -12.44402 -12.38158 -12.14986 -11.92596 -11.73841 -11.64024 -11.63635 -11.28641 -10.71053 -10.58240 -10.11373 -9.92324 -8.96053 -8.18467 -6.32342 0.42356 0.49315 1.41762 1.43223 1.56614 1.70602 2.11879 2.27648 2.44595 2.83071 3.14392 3.57370 3.91524 3.96218 3.98279 4.07010 4.12394 4.23219 4.31064 4.42869 4.48906 4.49798 4.52484 4.56301 4.68006 4.76775 4.87039 4.90021 4.93515 5.09712 5.12962 5.20181 5.25927 5.41180 5.44814 5.47360 5.54067 5.63364 5.72908 5.85380 5.90309 6.17798 6.46252 6.59499 6.86219 7.33748 7.37977 8.94361 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.002459 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.792767 B =11384.372306 C =12074.106606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C -0.088 4.088 4 C -0.163 4.163 5 C 0.108 3.892 6 O -0.321 6.321 7 C 0.061 3.939 8 C 0.143 3.857 9 H 0.094 0.906 10 C -0.155 4.155 11 N -0.715 5.715 12 C 0.514 3.486 13 O -0.585 6.585 14 C -0.121 4.121 15 C 0.043 3.957 16 C -0.542 4.542 17 H 0.075 0.925 18 C -0.008 4.008 19 N -0.937 5.937 20 Si 0.975 3.025 21 H -0.254 1.254 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.213 4.213 25 C -0.089 4.089 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.414 0.586 37 H 0.103 0.897 38 H 0.101 0.899 39 H -0.018 1.018 40 H -0.016 1.016 41 H 0.263 0.737 42 H 0.140 0.860 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.088 1.289 10.540 31.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.136 4.136 3 C -0.105 4.105 4 C -0.182 4.182 5 C 0.063 3.937 6 O -0.235 6.235 7 C -0.014 4.014 8 C 0.038 3.962 9 H 0.112 0.888 10 C -0.214 4.214 11 N -0.369 5.369 12 C 0.303 3.697 13 O -0.465 6.465 14 C -0.161 4.161 15 C 0.005 3.995 16 C -0.580 4.580 17 H 0.093 0.907 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.798 3.202 21 H -0.177 1.177 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.232 4.232 25 C -0.107 4.107 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.251 0.749 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.072 0.928 42 H 0.157 0.843 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -29.245 0.898 10.992 31.255 hybrid contribution 0.788 0.125 -0.755 1.098 sum -28.456 1.023 10.237 30.259 Atomic orbital electron populations 1.20760 0.89464 1.03486 1.02786 1.20197 0.97585 0.92950 1.02826 1.21136 0.92708 0.98868 0.97839 1.20662 0.94496 0.96518 1.06525 1.19206 0.82212 0.94839 0.97427 1.86051 1.16616 1.32010 1.88823 1.23113 0.90094 0.84375 1.03866 1.21101 0.92538 0.97951 0.84593 0.88839 1.22046 1.00640 1.00898 0.97789 1.46010 1.12642 1.52986 1.25248 1.21268 0.81621 0.79773 0.87050 1.90648 1.53257 1.41673 1.60920 1.21641 0.98926 1.01678 0.93828 1.18684 0.90870 0.94879 0.95064 1.21744 0.97663 1.30756 1.07857 0.90731 1.26149 0.96876 0.95972 1.01576 1.70180 1.05815 1.40617 1.41113 0.85260 0.78534 0.78127 0.78237 1.17708 1.20604 1.20543 1.21481 0.95951 0.97298 1.08438 1.21139 0.93247 0.98702 0.97653 0.90845 0.90906 0.90826 0.83653 0.84959 0.90251 0.88408 0.91413 0.89806 0.94621 0.74920 0.87882 0.88108 0.99945 0.99772 0.92847 0.84265 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 71.24 0.71 -0.20 16 2 C -0.14 -1.85 5.88 -19.85 -0.12 -1.96 16 3 C -0.09 -1.27 9.69 22.26 0.22 -1.05 16 4 C -0.16 -2.87 9.99 22.37 0.22 -2.65 16 5 C 0.11 2.03 6.69 22.51 0.15 2.18 16 6 O -0.32 -6.28 8.99 -92.47 -0.83 -7.12 16 7 C 0.06 1.03 4.48 71.98 0.32 1.36 16 8 C 0.14 3.38 2.98 44.99 0.13 3.52 16 9 H 0.09 2.48 7.58 -2.39 -0.02 2.46 16 10 C -0.16 -3.70 9.29 71.98 0.67 -3.03 16 11 N -0.72 -19.97 5.06 -442.52 -2.24 -22.21 16 12 C 0.51 20.14 7.79 87.66 0.68 20.82 16 13 O -0.59 -28.62 15.64 -3.03 -0.05 -28.67 16 14 C -0.12 -4.98 5.64 29.85 0.17 -4.81 16 15 C 0.04 2.42 4.26 29.85 0.13 2.54 16 16 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 17 H 0.07 3.95 7.74 -2.91 -0.02 3.92 16 18 C -0.01 -0.50 5.46 84.65 0.46 -0.03 16 19 N -0.94 -60.03 13.29 21.45 0.28 -59.75 16 20 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 21 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 C -0.21 -3.41 9.04 22.37 0.20 -3.20 16 25 C -0.09 -1.26 9.69 22.26 0.22 -1.05 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 28 H 0.07 0.49 8.08 -2.39 -0.02 0.47 16 29 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.08 1.22 7.65 -2.39 -0.02 1.20 16 32 H 0.10 1.25 7.67 -2.39 -0.02 1.23 16 33 H 0.07 1.57 7.56 -2.39 -0.02 1.55 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.41 9.49 8.38 -92.71 -0.78 8.72 16 37 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 38 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 39 H -0.02 -1.14 8.10 -2.38 -0.02 -1.16 16 40 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 41 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.14 1.77 6.30 -2.91 -0.02 1.75 16 43 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -77.32 362.28 3.81 -73.51 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.21 Total: 16.04 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 4.40 Total: -18.70 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.95 Total: -81.95 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.88 Total: -35.79 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -77.32 3.81 -73.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812485762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.181 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds