Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38238 * 119.99668 * 2 1 4 4 C 1.38234 * 119.99745 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99938 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99950 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47120 * 25.00288 * 6 5 4 8 8 O 1.42905 * 109.46937 * 145.00253 * 6 5 4 9 9 C 1.53002 * 109.47097 * 265.00072 * 6 5 4 10 10 H 1.08997 * 109.47011 * 64.99979 * 9 6 5 11 11 C 1.53001 * 109.46975 * 185.00291 * 9 6 5 12 12 N 1.46503 * 109.47189 * 305.00005 * 9 6 5 13 13 C 1.34777 * 119.99834 * 155.00116 * 12 9 6 14 14 O 1.21278 * 119.99954 * 0.02562 * 13 12 9 15 15 C 1.50703 * 119.99771 * 179.97438 * 13 12 9 16 16 C 1.52996 * 109.46716 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.46716 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00125 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99919 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99768 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47072 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46834 * 120.00065 * 21 19 17 24 24 H 1.48497 * 109.46927 * 240.00208 * 21 19 17 25 25 C 1.38234 * 120.00092 * 0.27643 * 5 4 3 26 26 C 1.38226 * 120.00134 * 179.97438 * 2 1 3 27 27 H 1.08990 * 109.47301 * 89.99622 * 1 2 3 28 28 H 1.08998 * 109.46558 * 210.00233 * 1 2 3 29 29 H 1.09003 * 109.47078 * 329.99720 * 1 2 3 30 30 H 1.07995 * 120.00097 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.00186 * 179.97438 * 4 3 2 32 32 H 0.96691 * 114.00079 * 59.99815 * 8 6 5 33 33 H 1.08996 * 109.47226 * 59.99519 * 11 9 6 34 34 H 1.09001 * 109.47239 * 180.02562 * 11 9 6 35 35 H 1.09008 * 109.46996 * 299.99945 * 11 9 6 36 36 H 0.96998 * 120.00122 * 335.00122 * 12 9 6 37 37 H 1.08994 * 109.46792 * 300.00199 * 15 13 12 38 38 H 1.09002 * 109.46923 * 60.00175 * 15 13 12 39 39 H 1.08993 * 109.47653 * 300.00278 * 16 15 13 40 40 H 1.09002 * 109.47185 * 60.00454 * 16 15 13 41 41 H 0.96995 * 119.99522 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.00319 * 179.72702 * 25 5 4 43 43 H 1.08008 * 119.99826 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 1 6.1417 0.9317 0.4370 8 8 6.2545 -1.1033 0.7764 9 6 6.2898 -0.1262 -1.4338 10 1 6.0019 0.7588 -2.0010 11 6 7.8147 -0.2517 -1.4234 12 7 5.7062 -1.3168 -2.0569 13 6 5.5807 -1.3831 -3.3972 14 8 5.9514 -0.4573 -4.0874 15 6 4.9809 -2.6080 -4.0381 16 6 4.9538 -2.4272 -5.5571 17 6 4.3545 -3.6524 -6.1981 18 1 4.0255 -4.4772 -5.5835 19 6 4.2253 -3.7198 -7.5692 20 7 4.6255 -2.7151 -8.3176 21 14 3.4818 -5.2382 -8.3638 22 1 3.1140 -6.2183 -7.3104 23 1 2.2674 -4.8532 -9.1268 24 1 4.4724 -5.8499 -9.2855 25 6 3.5806 -1.1971 -0.0036 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1325 -0.0004 31 1 4.1206 2.1325 0.0001 32 1 5.9694 -1.9665 0.4470 33 1 8.1026 -1.1367 -0.8561 34 1 8.1789 -0.3413 -2.4469 35 1 8.2490 0.6341 -0.9598 36 1 5.4100 -2.0574 -1.5048 37 1 5.5825 -3.4813 -3.7864 38 1 3.9642 -2.7491 -3.6712 39 1 4.3519 -1.5540 -5.8085 40 1 5.9703 -2.2858 -5.9244 41 1 4.5349 -2.7628 -9.2822 42 1 4.1206 -2.1324 -0.0073 43 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812573853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = -85.045241 kcal Electronic energy + Delta-G solvation = -23264.702854 eV Core-core repulsion = 19887.859055 eV Total energy + Delta-G solvation = -3376.843799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.42383 -39.01424 -37.53330 -34.38077 -33.43924 -32.98157 -31.50927 -31.04577 -30.15628 -28.22462 -25.75488 -24.97820 -22.99460 -22.37229 -21.16882 -20.53325 -19.79481 -17.75634 -17.02980 -16.54039 -15.99914 -15.46549 -15.40853 -14.88344 -14.69544 -14.44903 -14.18442 -13.95667 -13.79320 -13.58205 -13.25649 -13.05121 -12.43317 -12.38589 -12.25063 -12.17050 -12.01236 -11.79192 -11.58830 -11.19201 -11.14853 -11.03407 -10.94114 -10.58303 -10.29766 -9.96153 -9.66385 -9.17226 -9.08324 -9.00196 -8.81250 -8.63176 -8.32252 -5.96204 -4.00473 1.14439 1.26720 3.26679 3.32182 3.38279 3.41096 3.44226 3.57144 4.14904 4.35059 4.47467 4.58725 4.66502 4.78423 4.82020 5.01874 5.24623 5.26082 5.35047 5.38898 5.39283 5.43738 5.54924 5.55712 5.62243 5.75672 5.89957 5.93084 6.03970 6.21793 6.23207 6.23876 6.28221 6.36643 6.45042 6.71514 6.84282 6.88807 7.25396 7.74581 7.83543 7.86563 8.07292 8.38822 8.78476 9.08349 9.63087 11.14823 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.004079 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.613658 B = 6863.378303 C = 8138.791971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.118 4.118 4 C -0.106 4.106 5 C -0.117 4.117 6 C 0.142 3.858 7 H 0.118 0.882 8 O -0.549 6.549 9 C 0.115 3.885 10 H 0.094 0.906 11 C -0.157 4.157 12 N -0.738 5.738 13 C 0.513 3.487 14 O -0.532 6.532 15 C -0.130 4.130 16 C 0.037 3.963 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.104 4.104 26 C -0.114 4.114 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.371 0.629 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.389 0.611 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.116 0.884 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 5.413 21.787 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.118 4.118 6 C 0.083 3.917 7 H 0.135 0.865 8 O -0.354 6.354 9 C 0.009 3.991 10 H 0.112 0.888 11 C -0.216 4.216 12 N -0.393 5.393 13 C 0.302 3.698 14 O -0.407 6.407 15 C -0.170 4.170 16 C 0.000 4.000 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.122 4.122 26 C -0.132 4.132 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.219 0.781 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.223 0.777 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.134 0.866 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.281 6.636 21.425 22.545 hybrid contribution -0.840 -1.543 -0.658 1.876 sum -3.121 5.094 20.767 21.609 Atomic orbital electron populations 1.20809 0.91182 1.02604 1.02631 1.19949 0.96177 0.93225 0.99216 1.21005 0.94070 0.97619 1.00873 1.20915 0.94296 0.97299 0.99857 1.20397 0.96049 0.93997 1.01310 1.21188 0.88580 0.91356 0.90608 0.86451 1.86631 1.76524 1.16626 1.55638 1.21538 0.93829 0.91007 0.92711 0.88764 1.22073 0.94458 1.02263 1.02762 1.46244 1.65700 1.19622 1.07740 1.21516 0.77354 0.90017 0.80904 1.90664 1.48499 1.39408 1.62113 1.21862 1.00159 0.93521 1.01438 1.18890 0.98254 0.97140 0.85723 1.21256 1.41005 1.02370 0.91795 0.92596 1.25025 0.95635 0.96205 0.97495 1.70011 1.47069 1.30768 1.04978 0.86547 0.78913 0.83154 0.79419 1.19758 1.21027 1.21003 1.20751 0.94341 0.96972 1.00096 1.20997 0.93985 0.97737 1.00465 0.90875 0.91535 0.91659 0.86046 0.85966 0.78112 0.91900 0.91711 0.92017 0.77681 0.90326 0.90386 0.95884 0.95847 0.93019 0.86569 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.09 -0.89 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 4 C -0.11 -1.12 9.68 -39.58 -0.38 -1.50 16 5 C -0.12 -1.25 4.78 -104.62 -0.50 -1.75 16 6 C 0.14 1.41 3.12 -27.88 -0.09 1.33 16 7 H 0.12 1.03 8.05 -51.93 -0.42 0.62 16 8 O -0.55 -5.31 12.26 -35.23 -0.43 -5.74 16 9 C 0.11 1.41 2.47 -67.93 -0.17 1.24 16 10 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 11 C -0.16 -1.87 9.29 37.16 0.35 -1.52 16 12 N -0.74 -9.98 4.26 -53.80 -0.23 -10.21 16 13 C 0.51 9.77 7.79 -10.98 -0.09 9.68 16 14 O -0.53 -12.46 15.64 5.56 0.09 -12.38 16 15 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 16 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 17 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.52 13.29 55.43 0.74 -26.79 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.10 -1.06 8.17 -39.58 -0.32 -1.39 16 26 C -0.11 -1.19 9.70 -39.59 -0.38 -1.57 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.37 2.71 6.26 45.56 0.29 3.00 16 33 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.39 4.12 5.61 -40.82 -0.23 3.89 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.12 0.93 5.62 -52.48 -0.30 0.63 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -35.09 355.36 -8.46 -43.55 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.05 Total: 4.30 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.91 Total: -14.75 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.51 Total: -37.00 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.34 Total: -18.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.09 -8.46 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812573853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.494 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds