Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38238 * 119.99668 * 2 1 4 4 C 1.38234 * 119.99745 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99938 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99950 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47120 * 25.00288 * 6 5 4 8 8 O 1.42905 * 109.46937 * 145.00253 * 6 5 4 9 9 C 1.53002 * 109.47097 * 265.00072 * 6 5 4 10 10 H 1.08997 * 109.47011 * 64.99979 * 9 6 5 11 11 C 1.53001 * 109.46975 * 185.00291 * 9 6 5 12 12 N 1.46503 * 109.47189 * 305.00005 * 9 6 5 13 13 C 1.34777 * 119.99834 * 155.00116 * 12 9 6 14 14 O 1.21278 * 119.99954 * 0.02562 * 13 12 9 15 15 C 1.50703 * 119.99771 * 179.97438 * 13 12 9 16 16 C 1.52996 * 109.46716 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.46716 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00125 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99919 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99768 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47072 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46834 * 120.00065 * 21 19 17 24 24 H 1.48497 * 109.46927 * 240.00208 * 21 19 17 25 25 C 1.38234 * 120.00092 * 0.27643 * 5 4 3 26 26 C 1.38226 * 120.00134 * 179.97438 * 2 1 3 27 27 H 1.08990 * 109.47301 * 89.99622 * 1 2 3 28 28 H 1.08998 * 109.46558 * 210.00233 * 1 2 3 29 29 H 1.09003 * 109.47078 * 329.99720 * 1 2 3 30 30 H 1.07995 * 120.00097 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.00186 * 179.97438 * 4 3 2 32 32 H 0.96691 * 114.00079 * 59.99815 * 8 6 5 33 33 H 1.08996 * 109.47226 * 59.99519 * 11 9 6 34 34 H 1.09001 * 109.47239 * 180.02562 * 11 9 6 35 35 H 1.09008 * 109.46996 * 299.99945 * 11 9 6 36 36 H 0.96998 * 120.00122 * 335.00122 * 12 9 6 37 37 H 1.08994 * 109.46792 * 300.00199 * 15 13 12 38 38 H 1.09002 * 109.46923 * 60.00175 * 15 13 12 39 39 H 1.08993 * 109.47653 * 300.00278 * 16 15 13 40 40 H 1.09002 * 109.47185 * 60.00454 * 16 15 13 41 41 H 0.96995 * 119.99522 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.00319 * 179.72702 * 25 5 4 43 43 H 1.08008 * 119.99826 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 1 6.1417 0.9317 0.4370 8 8 6.2545 -1.1033 0.7764 9 6 6.2898 -0.1262 -1.4338 10 1 6.0019 0.7588 -2.0010 11 6 7.8147 -0.2517 -1.4234 12 7 5.7062 -1.3168 -2.0569 13 6 5.5807 -1.3831 -3.3972 14 8 5.9514 -0.4573 -4.0874 15 6 4.9809 -2.6080 -4.0381 16 6 4.9538 -2.4272 -5.5571 17 6 4.3545 -3.6524 -6.1981 18 1 4.0255 -4.4772 -5.5835 19 6 4.2253 -3.7198 -7.5692 20 7 4.6255 -2.7151 -8.3176 21 14 3.4818 -5.2382 -8.3638 22 1 3.1140 -6.2183 -7.3104 23 1 2.2674 -4.8532 -9.1268 24 1 4.4724 -5.8499 -9.2855 25 6 3.5806 -1.1971 -0.0036 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1325 -0.0004 31 1 4.1206 2.1325 0.0001 32 1 5.9694 -1.9665 0.4470 33 1 8.1026 -1.1367 -0.8561 34 1 8.1789 -0.3413 -2.4469 35 1 8.2490 0.6341 -0.9598 36 1 5.4100 -2.0574 -1.5048 37 1 5.5825 -3.4813 -3.7864 38 1 3.9642 -2.7491 -3.6712 39 1 4.3519 -1.5540 -5.8085 40 1 5.9703 -2.2858 -5.9244 41 1 4.5349 -2.7628 -9.2822 42 1 4.1206 -2.1324 -0.0073 43 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812573853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = -108.860474 kcal Electronic energy + Delta-G solvation = -23265.735560 eV Core-core repulsion = 19887.859055 eV Total energy + Delta-G solvation = -3377.876505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42812 -40.22417 -38.50037 -35.68130 -35.39067 -33.75517 -33.18337 -31.99931 -31.45906 -28.99259 -27.71081 -25.82315 -24.23310 -23.57965 -22.32110 -21.51454 -21.26281 -18.96267 -18.47347 -17.68245 -17.55206 -16.54056 -16.47546 -16.29079 -16.16533 -15.78962 -15.12000 -14.89433 -14.71128 -14.48448 -14.44698 -14.26411 -14.13737 -13.69564 -13.24181 -13.19303 -13.09656 -12.97745 -12.85074 -12.63337 -12.46056 -12.41026 -12.00719 -11.92834 -11.82860 -11.63520 -11.28445 -11.15564 -10.70562 -10.58098 -10.11882 -9.80781 -9.42061 -8.18158 -6.32123 0.36370 0.49620 1.42099 1.43430 1.56655 1.73789 2.18501 2.44072 2.77159 3.15158 3.39746 3.51109 3.79262 3.87151 4.03680 4.07418 4.12716 4.25481 4.35765 4.40691 4.50176 4.55518 4.56217 4.65989 4.75342 4.81443 4.82830 4.93858 4.97352 5.10078 5.17730 5.25508 5.28795 5.46290 5.47492 5.51953 5.61808 5.62944 5.70503 5.85374 6.10365 6.17607 6.54782 6.60622 6.86630 7.34931 7.38589 8.94816 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.004079 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.613658 B = 6863.378303 C = 8138.791971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.120 4.120 5 C -0.132 4.132 6 C 0.159 3.841 7 H 0.133 0.867 8 O -0.551 6.551 9 C 0.115 3.885 10 H 0.071 0.929 11 C -0.152 4.152 12 N -0.711 5.711 13 C 0.515 3.485 14 O -0.586 6.586 15 C -0.119 4.119 16 C 0.043 3.957 17 C -0.541 4.541 18 H 0.076 0.924 19 C -0.006 4.006 20 N -0.938 5.938 21 Si 0.973 3.027 22 H -0.252 1.252 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.113 4.113 26 C -0.129 4.129 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.382 0.618 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.407 0.593 37 H 0.105 0.895 38 H 0.101 0.899 39 H -0.020 1.020 40 H -0.018 1.018 41 H 0.262 0.738 42 H 0.138 0.862 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.635 3.548 23.885 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.138 4.138 5 C -0.133 4.133 6 C 0.099 3.901 7 H 0.150 0.850 8 O -0.358 6.358 9 C 0.010 3.990 10 H 0.089 0.911 11 C -0.210 4.210 12 N -0.365 5.365 13 C 0.304 3.696 14 O -0.465 6.465 15 C -0.159 4.159 16 C 0.006 3.994 17 C -0.579 4.579 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.175 1.175 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.131 4.131 26 C -0.147 4.147 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.231 0.769 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.245 0.755 37 H 0.123 0.877 38 H 0.119 0.881 39 H -0.002 1.002 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.156 0.844 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.082 4.736 23.603 24.270 hybrid contribution -0.592 -0.910 -1.256 1.660 sum -3.674 3.826 22.347 22.968 Atomic orbital electron populations 1.20838 0.89879 1.03730 1.02662 1.20306 0.97418 0.93375 0.98826 1.21291 0.94357 0.98430 1.01016 1.21216 0.94730 0.98087 0.99737 1.20556 0.96385 0.94350 1.01974 1.21024 0.88179 0.92251 0.88596 0.84957 1.86633 1.76508 1.17161 1.55462 1.21653 0.94229 0.89230 0.93916 0.91064 1.22023 0.93886 1.03945 1.01183 1.45895 1.64007 1.20668 1.05966 1.21252 0.77014 0.88908 0.82441 1.90653 1.51066 1.41031 1.63787 1.21629 1.02292 0.95166 0.96815 1.18671 0.94775 0.95352 0.90646 1.21740 1.40631 1.03028 0.92487 0.90578 1.26131 0.96005 0.99837 0.98402 1.70189 1.48663 1.33578 1.05412 0.85285 0.77753 0.78755 0.78529 1.17516 1.20687 1.20634 1.21071 0.94627 0.97770 0.99669 1.21304 0.94419 0.98430 1.00571 0.91268 0.90475 0.90567 0.84738 0.84689 0.76867 0.90571 0.94836 0.89960 0.75482 0.87699 0.88103 1.00195 0.99992 0.92895 0.84421 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.01 71.24 0.71 -1.00 16 2 C -0.10 -1.95 5.88 -19.87 -0.12 -2.06 16 3 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 4 C -0.12 -2.40 9.68 22.27 0.22 -2.18 16 5 C -0.13 -2.60 4.78 -19.87 -0.09 -2.69 16 6 C 0.16 2.81 3.12 29.85 0.09 2.90 16 7 H 0.13 2.00 8.05 -2.39 -0.02 1.98 16 8 O -0.55 -8.91 12.26 -148.98 -1.83 -10.74 16 9 C 0.11 2.70 2.47 44.99 0.11 2.81 16 10 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 11 C -0.15 -3.44 9.29 71.98 0.67 -2.77 16 12 N -0.71 -18.30 4.26 -442.52 -1.89 -20.19 16 13 C 0.52 19.72 7.79 87.66 0.68 20.40 16 14 O -0.59 -28.75 15.64 -3.02 -0.05 -28.80 16 15 C -0.12 -4.76 5.64 29.85 0.17 -4.59 16 16 C 0.04 2.42 4.26 29.85 0.13 2.55 16 17 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 18 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 19 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 20 N -0.94 -59.82 13.29 21.45 0.28 -59.54 16 21 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 22 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 C -0.11 -2.08 8.17 22.27 0.18 -1.90 16 26 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 29 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 30 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.38 4.21 6.26 -74.06 -0.46 3.74 16 33 H 0.08 1.52 7.56 -2.39 -0.02 1.50 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.41 7.51 5.61 -92.71 -0.52 6.99 16 37 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 38 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 39 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 40 H -0.02 -1.17 8.10 -2.39 -0.02 -1.18 16 41 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.14 1.75 5.62 -2.91 -0.02 1.74 16 43 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -79.40 355.36 2.46 -76.94 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.03 Total: 19.74 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.88 Total: -23.71 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -1.60 Total: -79.73 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -1.87 Total: -39.54 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -79.40 2.46 -76.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812573853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.916 kcal (2) G-P(sol) polarization free energy of solvation -79.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds