Wall clock time and date at job start Tue Mar 31 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38229 * 120.00068 * 2 1 4 4 C 1.38236 * 120.00105 * 180.02562 * 3 2 1 5 5 C 1.38237 * 119.99872 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99748 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47358 * 340.00128 * 6 5 4 8 8 O 1.42903 * 109.47131 * 219.99768 * 6 5 4 9 9 C 1.53003 * 109.47222 * 100.00514 * 6 5 4 10 10 H 1.09005 * 109.46682 * 304.99605 * 9 6 5 11 11 C 1.52999 * 109.47033 * 64.99401 * 9 6 5 12 12 N 1.46494 * 109.47283 * 184.99877 * 9 6 5 13 13 C 1.34773 * 120.00072 * 154.99913 * 12 9 6 14 14 O 1.21286 * 120.00053 * 359.97438 * 13 12 9 15 15 C 1.50698 * 120.00206 * 179.97438 * 13 12 9 16 16 C 1.53000 * 109.47361 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47361 * 179.97438 * 16 15 13 18 18 H 1.08006 * 120.00265 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00543 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00432 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99427 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46924 * 90.00526 * 21 19 17 23 23 H 1.48508 * 109.47034 * 210.00211 * 21 19 17 24 24 H 1.48502 * 109.47420 * 329.99870 * 21 19 17 25 25 C 1.38234 * 120.00082 * 0.25865 * 5 4 3 26 26 C 1.38238 * 119.99744 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47783 * 89.99771 * 1 2 3 28 28 H 1.09001 * 109.47279 * 209.99718 * 1 2 3 29 29 H 1.09004 * 109.47083 * 329.99529 * 1 2 3 30 30 H 1.08001 * 119.99941 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.00041 * 179.97438 * 4 3 2 32 32 H 0.96700 * 114.00311 * 300.00591 * 8 6 5 33 33 H 1.09008 * 109.47087 * 180.02562 * 11 9 6 34 34 H 1.08999 * 109.47390 * 300.00226 * 11 9 6 35 35 H 1.09005 * 109.47219 * 60.00534 * 11 9 6 36 36 H 0.96998 * 120.00010 * 334.99310 * 12 9 6 37 37 H 1.09001 * 109.47500 * 299.99853 * 15 13 12 38 38 H 1.09005 * 109.47378 * 59.99773 * 15 13 12 39 39 H 1.09004 * 109.47197 * 299.99775 * 16 15 13 40 40 H 1.08994 * 109.47255 * 60.00331 * 16 15 13 41 41 H 0.97006 * 119.99931 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.00194 * 179.72690 * 25 5 4 43 43 H 1.07996 * 120.00421 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2716 -0.0001 -0.0005 6 6 5.7786 0.0000 -0.0017 7 1 6.1417 0.9655 -0.3539 8 8 6.2543 -1.0325 -0.8676 9 6 6.2897 -0.2500 1.4186 10 1 5.8556 0.4858 2.0957 11 6 5.8852 -1.6561 1.8661 12 7 7.7497 -0.1317 1.4401 13 6 8.3829 0.1906 2.5853 14 8 7.7440 0.3833 3.5980 15 6 9.8849 0.3117 2.6075 16 6 10.3457 0.6849 4.0180 17 6 11.8477 0.8053 4.0404 18 1 12.4168 0.6334 3.1386 19 6 12.4955 1.1350 5.2119 20 7 13.8062 1.2407 5.2313 21 14 11.5112 1.4331 6.7714 22 1 11.3541 0.1542 7.5095 23 1 12.2253 2.4142 7.6275 24 1 10.1720 1.9680 6.4169 25 6 3.5805 -1.1972 -0.0054 26 6 2.1981 -1.1972 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6581 2.1324 0.0004 31 1 4.1205 2.1324 -0.0010 32 1 5.9691 -1.9210 -0.6140 33 1 6.2490 -1.8340 2.8781 34 1 4.7989 -1.7440 1.8501 35 1 6.3193 -2.3918 1.1890 36 1 8.2607 -0.2856 0.6301 37 1 10.3305 -0.6403 2.3193 38 1 10.1974 1.0860 1.9068 39 1 9.9001 1.6372 4.3058 40 1 10.0332 -0.0891 4.7189 41 1 14.2619 1.4730 6.0555 42 1 4.1204 -2.1325 -0.0099 43 1 1.6581 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812573854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:55 Heat of formation + Delta-G solvation = -106.786888 kcal Electronic energy + Delta-G solvation = -22653.021590 eV Core-core repulsion = 19275.235002 eV Total energy + Delta-G solvation = -3377.786588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36971 -40.39016 -38.52621 -35.70637 -35.41117 -33.91485 -33.36054 -31.96769 -31.42098 -28.92751 -28.03578 -26.26702 -23.66621 -23.57766 -22.22885 -21.49071 -21.12226 -19.25460 -18.69375 -17.81921 -17.01425 -16.89930 -16.45324 -16.29427 -16.10716 -15.98486 -15.38431 -15.01171 -14.77986 -14.55911 -14.47469 -14.42364 -14.29342 -13.53139 -13.41522 -13.39505 -12.99856 -12.95636 -12.85284 -12.56054 -12.54095 -12.11554 -12.01662 -11.97223 -11.80775 -11.77107 -11.40430 -11.24365 -10.78755 -10.71454 -10.14399 -9.83329 -9.43709 -8.31915 -6.34811 0.31601 0.47243 1.32565 1.34362 1.49640 1.68694 2.18479 2.34474 2.77684 3.03577 3.41649 3.61345 3.71483 3.83345 4.01563 4.03974 4.08947 4.11633 4.26593 4.38216 4.41203 4.49637 4.54915 4.63383 4.74915 4.82668 4.83472 4.89719 4.92590 5.02946 5.15063 5.21482 5.25422 5.33031 5.44286 5.45317 5.52705 5.60296 5.61065 5.68795 6.07826 6.23247 6.58904 6.63907 6.71641 7.30417 7.31849 8.83745 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031475 B = 0.002765 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.381237 B =10123.096039 C =10516.271699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.118 4.118 5 C -0.131 4.131 6 C 0.157 3.843 7 H 0.112 0.888 8 O -0.555 6.555 9 C 0.115 3.885 10 H 0.071 0.929 11 C -0.169 4.169 12 N -0.712 5.712 13 C 0.516 3.484 14 O -0.585 6.585 15 C -0.117 4.117 16 C 0.006 3.994 17 C -0.529 4.529 18 H 0.050 0.950 19 C 0.012 3.988 20 N -0.943 5.943 21 Si 0.939 3.061 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.110 4.110 26 C -0.128 4.128 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.386 0.614 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.416 0.584 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.267 0.733 42 H 0.141 0.859 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.308 -5.746 -15.548 32.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.132 4.132 6 C 0.098 3.902 7 H 0.130 0.870 8 O -0.364 6.364 9 C 0.010 3.990 10 H 0.089 0.911 11 C -0.227 4.227 12 N -0.365 5.365 13 C 0.304 3.696 14 O -0.465 6.465 15 C -0.157 4.157 16 C -0.032 4.032 17 C -0.567 4.567 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.584 5.584 21 Si 0.764 3.236 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.128 4.128 26 C -0.146 4.146 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.237 0.763 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.254 0.746 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.159 0.841 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -28.349 -5.079 -15.035 32.488 hybrid contribution 0.212 -0.129 0.966 0.998 sum -28.137 -5.208 -14.068 31.886 Atomic orbital electron populations 1.20848 0.89615 1.03578 1.03087 1.20323 0.97492 0.93187 0.98380 1.21278 0.93988 0.98649 1.01010 1.21222 0.94938 0.97889 0.99548 1.20358 0.95447 0.94542 1.02862 1.20858 0.88950 0.92854 0.87584 0.86993 1.86613 1.76682 1.19069 1.54006 1.21555 0.80658 0.99007 0.97777 0.91103 1.22285 1.02871 0.95919 1.01639 1.45915 1.07325 1.71103 1.12118 1.21178 0.91028 0.74489 0.82865 1.90636 1.69109 1.51728 1.35025 1.21500 0.89602 1.04541 1.00069 1.19211 0.94023 0.96123 0.93846 1.21437 0.91678 1.46884 0.96722 0.93178 1.25816 0.95680 0.94661 1.02359 1.70024 1.09146 1.50301 1.28907 0.85816 0.79406 0.78815 0.79583 1.19349 1.20309 1.18644 1.21166 0.94731 0.97766 0.99135 1.21313 0.94093 0.98507 1.00714 0.90270 0.90631 0.91017 0.84666 0.85342 0.76319 0.94146 0.89599 0.89974 0.74639 0.88002 0.88059 0.97239 0.97355 0.92369 0.84106 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.23 0.71 -0.31 16 2 C -0.09 -1.31 5.88 -19.87 -0.12 -1.42 16 3 C -0.13 -2.02 9.70 22.27 0.22 -1.80 16 4 C -0.12 -2.02 9.67 22.27 0.22 -1.80 16 5 C -0.13 -2.20 4.81 -19.87 -0.10 -2.30 16 6 C 0.16 2.72 3.18 29.85 0.09 2.82 16 7 H 0.11 1.98 8.00 -2.39 -0.02 1.96 16 8 O -0.56 -8.79 12.82 -148.98 -1.91 -10.69 16 9 C 0.12 2.56 2.44 44.99 0.11 2.67 16 10 H 0.07 1.97 7.58 -2.38 -0.02 1.95 16 11 C -0.17 -3.29 8.23 71.98 0.59 -2.69 16 12 N -0.71 -18.05 5.06 -442.54 -2.24 -20.29 16 13 C 0.52 18.43 7.79 87.66 0.68 19.11 16 14 O -0.59 -25.92 15.64 -3.05 -0.05 -25.97 16 15 C -0.12 -4.50 5.64 29.85 0.17 -4.34 16 16 C 0.01 0.30 3.33 29.85 0.10 0.40 16 17 C -0.53 -30.91 9.66 25.60 0.25 -30.66 16 18 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 19 C 0.01 0.75 5.47 84.66 0.46 1.21 16 20 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 21 Si 0.94 47.28 27.47 68.60 1.88 49.17 16 22 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.26 -13.14 6.54 99.48 0.65 -12.49 16 25 C -0.11 -1.54 7.30 22.27 0.16 -1.38 16 26 C -0.13 -1.71 9.70 22.27 0.22 -1.50 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 29 H 0.07 0.57 8.09 -2.38 -0.02 0.55 16 30 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.13 1.96 8.04 -2.91 -0.02 1.94 16 32 H 0.39 3.91 5.65 -74.06 -0.42 3.50 16 33 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.09 1.39 5.59 -2.39 -0.01 1.38 16 35 H 0.08 1.18 6.72 -2.38 -0.02 1.16 16 36 H 0.42 8.50 8.38 -92.71 -0.78 7.73 16 37 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.10 3.56 8.14 -2.38 -0.02 3.54 16 39 H 0.01 0.49 7.16 -2.38 -0.02 0.47 16 40 H 0.01 0.42 7.53 -2.39 -0.02 0.40 16 41 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 42 H 0.14 1.32 5.89 -2.91 -0.02 1.30 16 43 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -75.68 350.21 1.53 -74.15 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -0.23 Total: 14.88 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 3.77 Total: -21.99 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.94 Total: -79.54 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.96 Total: -36.66 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.88 Total: 49.17 kcal Total: -75.68 1.53 -74.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812573854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.637 kcal (2) G-P(sol) polarization free energy of solvation -75.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds