Wall clock time and date at job start Tue Mar 31 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38238 * 120.00015 * 2 1 4 4 C 1.38233 * 119.99851 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99977 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47255 * 340.00366 * 6 5 4 8 8 O 1.42902 * 109.47208 * 219.99940 * 6 5 4 9 9 C 1.53004 * 109.46894 * 100.00364 * 6 5 4 10 10 H 1.08995 * 109.47216 * 299.99899 * 9 6 5 11 11 C 1.52999 * 109.47083 * 179.97438 * 9 6 5 12 12 N 1.46498 * 109.47065 * 59.99788 * 9 6 5 13 13 C 1.34777 * 119.99828 * 204.72115 * 12 9 6 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 9 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 9 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47398 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99463 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00445 * 180.02562 * 17 16 15 20 20 N 1.31524 * 120.00004 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00395 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46744 * 89.99968 * 21 19 17 23 23 H 1.48501 * 109.47447 * 209.99968 * 21 19 17 24 24 H 1.48499 * 109.46902 * 330.00308 * 21 19 17 25 25 C 1.38238 * 120.00261 * 0.25402 * 5 4 3 26 26 C 1.38232 * 120.00019 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47397 * 89.99479 * 1 2 3 28 28 H 1.09003 * 109.47250 * 209.99400 * 1 2 3 29 29 H 1.08997 * 109.47128 * 329.99608 * 1 2 3 30 30 H 1.08000 * 120.00119 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.00019 * 179.97438 * 4 3 2 32 32 H 0.96694 * 114.00140 * 300.00206 * 8 6 5 33 33 H 1.08995 * 109.47098 * 300.00077 * 11 9 6 34 34 H 1.09003 * 109.47054 * 59.99725 * 11 9 6 35 35 H 1.08996 * 109.47245 * 179.97438 * 11 9 6 36 36 H 0.97001 * 120.00384 * 25.00562 * 12 9 6 37 37 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 38 38 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 39 39 H 1.08998 * 109.47508 * 300.00200 * 16 15 13 40 40 H 1.09011 * 109.47182 * 60.00188 * 16 15 13 41 41 H 0.96991 * 119.99897 * 179.97438 * 20 19 17 42 42 H 1.07994 * 120.00494 * 179.72721 * 25 5 4 43 43 H 1.08003 * 120.00321 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 1 6.1420 0.9656 -0.3509 8 8 6.2550 -1.0321 -0.8655 9 6 6.2886 -0.2506 1.4212 10 1 5.9253 0.5366 2.0817 11 6 7.8186 -0.2512 1.4211 12 7 5.8002 -1.5485 1.8935 13 6 5.6768 -1.7817 3.2152 14 8 5.9652 -0.9153 4.0134 15 6 5.1803 -3.1190 3.7013 16 6 5.1335 -3.1205 5.2305 17 6 4.6377 -4.4580 5.7166 18 1 4.3811 -5.2296 5.0058 19 6 4.5105 -4.6962 7.0686 20 7 4.8224 -3.7564 7.9342 21 14 3.8952 -6.3538 7.6712 22 1 5.0489 -7.2672 7.8712 23 1 3.1752 -6.1767 8.9579 24 1 2.9723 -6.9353 6.6635 25 6 3.5805 -1.1972 -0.0053 26 6 2.1981 -1.1971 0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8901 0.5137 29 1 -0.3633 0.8899 0.5139 30 1 1.6581 2.1325 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 5.9697 -1.9207 -0.6125 33 1 8.1816 -1.0386 0.7606 34 1 8.1823 0.7143 1.0695 35 1 8.1819 -0.4293 2.4332 36 1 5.5696 -2.2415 1.2551 37 1 4.1804 -3.3004 3.3073 38 1 5.8542 -3.9036 3.3572 39 1 6.1333 -2.9389 5.6248 40 1 4.4594 -2.3358 5.5742 41 1 4.7326 -3.9239 8.8853 42 1 4.1204 -2.1325 -0.0098 43 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812573855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:59 Heat of formation + Delta-G solvation = -84.387550 kcal Electronic energy + Delta-G solvation = -23233.399835 eV Core-core repulsion = 19856.584555 eV Total energy + Delta-G solvation = -3376.815279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42302 -39.02673 -37.53235 -34.37096 -33.44119 -33.00075 -31.51956 -31.05124 -30.18565 -28.20836 -25.76227 -24.95840 -23.02260 -22.36165 -21.16116 -20.55905 -19.81479 -17.77272 -17.03463 -16.53625 -15.99339 -15.48969 -15.40026 -14.87375 -14.67399 -14.44954 -14.18688 -13.94056 -13.79877 -13.58656 -13.25991 -13.07568 -12.44300 -12.38467 -12.25873 -12.16505 -12.01708 -11.83234 -11.60928 -11.19973 -11.15181 -11.00271 -10.92430 -10.60156 -10.29163 -9.95970 -9.66618 -9.18308 -9.08740 -9.01441 -8.82823 -8.63424 -8.31947 -5.96058 -4.00526 1.13707 1.26741 3.25899 3.32992 3.37219 3.40039 3.42742 3.56880 4.16497 4.34390 4.47429 4.58474 4.66510 4.78243 4.81923 5.02562 5.25103 5.26633 5.33845 5.38758 5.38915 5.41455 5.54836 5.54977 5.62111 5.74834 5.89919 5.92630 6.03677 6.21129 6.22737 6.23381 6.28024 6.36839 6.44841 6.69807 6.84054 6.88212 7.25262 7.74063 7.82075 7.86316 8.07215 8.38604 8.77602 9.08049 9.63039 11.14917 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.004000 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.093275 B = 6998.702652 C = 8243.870536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.119 4.119 4 C -0.106 4.106 5 C -0.119 4.119 6 C 0.143 3.857 7 H 0.118 0.882 8 O -0.548 6.548 9 C 0.115 3.885 10 H 0.095 0.905 11 C -0.158 4.158 12 N -0.738 5.738 13 C 0.514 3.486 14 O -0.531 6.531 15 C -0.130 4.130 16 C 0.038 3.962 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.100 4.100 26 C -0.114 4.114 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.370 0.630 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.388 0.612 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.116 0.884 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 8.198 -20.970 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.124 4.124 5 C -0.119 4.119 6 C 0.083 3.917 7 H 0.135 0.865 8 O -0.354 6.354 9 C 0.009 3.991 10 H 0.113 0.887 11 C -0.216 4.216 12 N -0.394 5.394 13 C 0.302 3.698 14 O -0.406 6.406 15 C -0.170 4.170 16 C 0.000 4.000 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.118 4.118 26 C -0.132 4.132 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.219 0.781 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.223 0.777 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.134 0.866 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.757 9.387 -20.473 22.690 hybrid contribution -0.727 -1.652 0.462 1.863 sum -3.484 7.735 -20.011 21.735 Atomic orbital electron populations 1.20805 0.91183 1.03061 1.02170 1.19950 0.96176 0.93222 0.99213 1.21003 0.94070 0.97599 1.01009 1.20927 0.94289 0.97276 0.99875 1.20411 0.96085 0.93982 1.01464 1.21192 0.88532 0.92757 0.89205 0.86471 1.86635 1.76478 1.18099 1.54186 1.21531 0.94777 0.88160 0.94588 0.88744 1.22088 0.94549 1.02129 1.02876 1.46249 1.69764 1.15380 1.07962 1.21522 0.76246 0.91108 0.80906 1.90667 1.48761 1.47015 1.54157 1.21866 1.00840 0.91512 1.02779 1.18887 0.98347 0.96966 0.85786 1.21214 1.44539 0.98960 0.91789 0.92650 1.25019 0.95549 0.96765 0.97002 1.70001 1.48222 1.32812 1.01796 0.86601 0.78899 0.84241 0.78258 1.20662 1.21221 1.19903 1.20772 0.94333 0.96986 0.99749 1.21016 0.94013 0.97768 1.00423 0.91256 0.91311 0.91522 0.86053 0.85954 0.78146 0.91895 0.92030 0.91682 0.77734 0.90369 0.90301 0.95851 0.95871 0.92960 0.86611 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.01 36.00 0.36 -0.58 16 2 C -0.09 -0.89 5.88 -104.63 -0.62 -1.51 16 3 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 4 C -0.11 -1.10 9.67 -39.58 -0.38 -1.48 16 5 C -0.12 -1.28 4.88 -104.62 -0.51 -1.79 16 6 C 0.14 1.42 3.09 -27.88 -0.09 1.34 16 7 H 0.12 1.03 8.00 -51.93 -0.42 0.62 16 8 O -0.55 -5.37 12.51 -35.23 -0.44 -5.81 16 9 C 0.11 1.41 2.40 -67.93 -0.16 1.25 16 10 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 11 C -0.16 -1.88 9.33 37.16 0.35 -1.54 16 12 N -0.74 -9.93 4.18 -53.81 -0.23 -10.15 16 13 C 0.51 9.73 7.79 -10.98 -0.09 9.64 16 14 O -0.53 -12.43 15.65 5.55 0.09 -12.34 16 15 C -0.13 -2.62 5.64 -27.89 -0.16 -2.77 16 16 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 17 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.10 -1.06 8.32 -39.58 -0.33 -1.38 16 26 C -0.11 -1.22 9.70 -39.58 -0.38 -1.60 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.12 1.03 8.04 -52.48 -0.42 0.61 16 32 H 0.37 2.76 6.12 45.56 0.28 3.04 16 33 H 0.06 0.70 7.68 -51.93 -0.40 0.31 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.39 4.05 5.47 -40.82 -0.22 3.82 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.68 8.10 -51.92 -0.42 0.26 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.12 0.98 5.50 -52.49 -0.29 0.69 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -35.08 355.37 -8.47 -43.55 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.05 Total: 4.31 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -2.92 Total: -14.79 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.51 Total: -36.93 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.35 Total: -18.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.08 -8.47 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812573855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.835 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds