Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38238 * 120.00015 * 2 1 4 4 C 1.38233 * 119.99851 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99977 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47255 * 340.00366 * 6 5 4 8 8 O 1.42902 * 109.47208 * 219.99940 * 6 5 4 9 9 C 1.53004 * 109.46894 * 100.00364 * 6 5 4 10 10 H 1.08995 * 109.47216 * 299.99899 * 9 6 5 11 11 C 1.52999 * 109.47083 * 179.97438 * 9 6 5 12 12 N 1.46498 * 109.47065 * 59.99788 * 9 6 5 13 13 C 1.34777 * 119.99828 * 204.72115 * 12 9 6 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 9 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 9 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47398 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99463 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00445 * 180.02562 * 17 16 15 20 20 N 1.31524 * 120.00004 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00395 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46744 * 89.99968 * 21 19 17 23 23 H 1.48501 * 109.47447 * 209.99968 * 21 19 17 24 24 H 1.48499 * 109.46902 * 330.00308 * 21 19 17 25 25 C 1.38238 * 120.00261 * 0.25402 * 5 4 3 26 26 C 1.38232 * 120.00019 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47397 * 89.99479 * 1 2 3 28 28 H 1.09003 * 109.47250 * 209.99400 * 1 2 3 29 29 H 1.08997 * 109.47128 * 329.99608 * 1 2 3 30 30 H 1.08000 * 120.00119 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.00019 * 179.97438 * 4 3 2 32 32 H 0.96694 * 114.00140 * 300.00206 * 8 6 5 33 33 H 1.08995 * 109.47098 * 300.00077 * 11 9 6 34 34 H 1.09003 * 109.47054 * 59.99725 * 11 9 6 35 35 H 1.08996 * 109.47245 * 179.97438 * 11 9 6 36 36 H 0.97001 * 120.00384 * 25.00562 * 12 9 6 37 37 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 38 38 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 39 39 H 1.08998 * 109.47508 * 300.00200 * 16 15 13 40 40 H 1.09011 * 109.47182 * 60.00188 * 16 15 13 41 41 H 0.96991 * 119.99897 * 179.97438 * 20 19 17 42 42 H 1.07994 * 120.00494 * 179.72721 * 25 5 4 43 43 H 1.08003 * 120.00321 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 1 6.1420 0.9656 -0.3509 8 8 6.2550 -1.0321 -0.8655 9 6 6.2886 -0.2506 1.4212 10 1 5.9253 0.5366 2.0817 11 6 7.8186 -0.2512 1.4211 12 7 5.8002 -1.5485 1.8935 13 6 5.6768 -1.7817 3.2152 14 8 5.9652 -0.9153 4.0134 15 6 5.1803 -3.1190 3.7013 16 6 5.1335 -3.1205 5.2305 17 6 4.6377 -4.4580 5.7166 18 1 4.3811 -5.2296 5.0058 19 6 4.5105 -4.6962 7.0686 20 7 4.8224 -3.7564 7.9342 21 14 3.8952 -6.3538 7.6712 22 1 5.0489 -7.2672 7.8712 23 1 3.1752 -6.1767 8.9579 24 1 2.9723 -6.9353 6.6635 25 6 3.5805 -1.1972 -0.0053 26 6 2.1981 -1.1971 0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8901 0.5137 29 1 -0.3633 0.8899 0.5139 30 1 1.6581 2.1325 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 5.9697 -1.9207 -0.6125 33 1 8.1816 -1.0386 0.7606 34 1 8.1823 0.7143 1.0695 35 1 8.1819 -0.4293 2.4332 36 1 5.5696 -2.2415 1.2551 37 1 4.1804 -3.3004 3.3073 38 1 5.8542 -3.9036 3.3572 39 1 6.1333 -2.9389 5.6248 40 1 4.4594 -2.3358 5.5742 41 1 4.7326 -3.9239 8.8853 42 1 4.1204 -2.1325 -0.0098 43 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812573855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = -108.176085 kcal Electronic energy + Delta-G solvation = -23234.431383 eV Core-core repulsion = 19856.584555 eV Total energy + Delta-G solvation = -3377.846828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43137 -40.22750 -38.50749 -35.67566 -35.38306 -33.77770 -33.18466 -32.00454 -31.49013 -28.97713 -27.71395 -25.80668 -24.25616 -23.57467 -22.31713 -21.53613 -21.27749 -18.96975 -18.49574 -17.68182 -17.53893 -16.54653 -16.48068 -16.30269 -16.15368 -15.77097 -15.09450 -14.91908 -14.68197 -14.50278 -14.43798 -14.26243 -14.13911 -13.71397 -13.24757 -13.20397 -13.11064 -12.98479 -12.82043 -12.65075 -12.48885 -12.44945 -11.99179 -11.91971 -11.81534 -11.63301 -11.30408 -11.15976 -10.71027 -10.56872 -10.12552 -9.80996 -9.42811 -8.17800 -6.31920 0.35644 0.49387 1.42144 1.44840 1.55662 1.73581 2.17043 2.44166 2.76692 3.15391 3.40375 3.50286 3.79093 3.86160 4.02889 4.07019 4.12736 4.26220 4.34210 4.40894 4.50075 4.55470 4.56020 4.65892 4.74526 4.81290 4.82557 4.93586 4.97111 5.10114 5.17437 5.24974 5.28395 5.45676 5.47250 5.51593 5.61584 5.63119 5.69940 5.85491 6.09944 6.17695 6.53119 6.59583 6.86654 7.34609 7.38765 8.94948 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.004000 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.093275 B = 6998.702652 C = 8243.870536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.118 4.118 5 C -0.135 4.135 6 C 0.159 3.841 7 H 0.134 0.866 8 O -0.551 6.551 9 C 0.115 3.885 10 H 0.071 0.929 11 C -0.153 4.153 12 N -0.711 5.711 13 C 0.516 3.484 14 O -0.586 6.586 15 C -0.120 4.120 16 C 0.043 3.957 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.006 4.006 20 N -0.938 5.938 21 Si 0.973 3.027 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.255 1.255 25 C -0.112 4.112 26 C -0.132 4.132 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.381 0.619 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.407 0.593 37 H 0.102 0.898 38 H 0.105 0.895 39 H -0.019 1.019 40 H -0.020 1.020 41 H 0.262 0.738 42 H 0.134 0.866 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 6.718 -23.254 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.136 4.136 5 C -0.135 4.135 6 C 0.100 3.900 7 H 0.152 0.848 8 O -0.358 6.358 9 C 0.010 3.990 10 H 0.089 0.911 11 C -0.211 4.211 12 N -0.366 5.366 13 C 0.304 3.696 14 O -0.465 6.465 15 C -0.159 4.159 16 C 0.006 3.994 17 C -0.580 4.580 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.213 1.213 24 H -0.178 1.178 25 C -0.130 4.130 26 C -0.150 4.150 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.230 0.770 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.245 0.755 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.000 1.000 40 H -0.002 1.002 41 H 0.071 0.929 42 H 0.152 0.848 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.426 7.879 -22.841 24.403 hybrid contribution -0.525 -1.131 1.122 1.677 sum -3.950 6.748 -21.719 23.084 Atomic orbital electron populations 1.20837 0.89843 1.03334 1.03093 1.20309 0.97442 0.93351 0.98757 1.21300 0.94356 0.98394 1.01009 1.21246 0.94718 0.98059 0.99536 1.20576 0.96447 0.94342 1.02152 1.21045 0.88117 0.93630 0.87238 0.84838 1.86635 1.76466 1.18744 1.53934 1.21642 0.95180 0.86410 0.95763 0.91086 1.22039 0.93931 1.03875 1.01284 1.45897 1.67845 1.16541 1.06327 1.21258 0.75943 0.90086 0.82282 1.90656 1.51441 1.48380 1.56021 1.21636 1.03086 0.93238 0.97973 1.18669 0.94691 0.95441 0.90637 1.21709 1.44050 0.99667 0.92550 0.90566 1.26127 0.95598 1.01276 0.97355 1.70183 1.49738 1.35691 1.02228 0.85335 0.78651 0.78598 0.77750 1.19697 1.21253 1.17834 1.21067 0.94633 0.97762 0.99533 1.21303 0.94441 0.98477 1.00778 0.89945 0.91246 0.91043 0.84525 0.84380 0.76954 0.90660 0.89856 0.94815 0.75496 0.87983 0.87677 1.00025 1.00178 0.92898 0.84791 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.01 71.23 0.71 -0.99 16 2 C -0.10 -1.94 5.88 -19.87 -0.12 -2.05 16 3 C -0.13 -2.57 9.70 22.27 0.22 -2.36 16 4 C -0.12 -2.30 9.67 22.27 0.22 -2.09 16 5 C -0.13 -2.67 4.88 -19.86 -0.10 -2.77 16 6 C 0.16 2.83 3.09 29.85 0.09 2.92 16 7 H 0.13 1.99 8.00 -2.39 -0.02 1.97 16 8 O -0.55 -9.10 12.51 -148.98 -1.86 -10.96 16 9 C 0.12 2.71 2.40 44.99 0.11 2.82 16 10 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 11 C -0.15 -3.47 9.33 71.98 0.67 -2.80 16 12 N -0.71 -18.25 4.18 -442.53 -1.85 -20.10 16 13 C 0.52 19.66 7.79 87.66 0.68 20.35 16 14 O -0.59 -28.71 15.65 -3.04 -0.05 -28.76 16 15 C -0.12 -4.75 5.64 29.85 0.17 -4.58 16 16 C 0.04 2.42 4.26 29.85 0.13 2.55 16 17 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 18 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 19 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 20 N -0.94 -59.83 13.29 21.45 0.28 -59.54 16 21 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 25 C -0.11 -2.15 8.32 22.27 0.19 -1.96 16 26 C -0.13 -2.62 9.70 22.27 0.22 -2.41 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 29 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 30 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.14 2.12 8.04 -2.91 -0.02 2.09 16 32 H 0.38 4.38 6.12 -74.06 -0.45 3.93 16 33 H 0.07 1.52 7.68 -2.39 -0.02 1.50 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.41 7.41 5.47 -92.71 -0.51 6.91 16 37 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 38 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 39 H -0.02 -1.19 8.10 -2.39 -0.02 -1.20 16 40 H -0.02 -1.29 8.10 -2.38 -0.02 -1.31 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.13 1.88 5.50 -2.91 -0.02 1.87 16 43 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -79.44 355.37 2.48 -76.96 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.05 Total: 19.99 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 3.88 Total: -23.84 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -1.57 Total: -79.64 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.91 Total: -39.72 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -79.44 2.48 -76.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812573855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.217 kcal (2) G-P(sol) polarization free energy of solvation -79.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds