Wall clock time and date at job start Tue Mar 31 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38237 * 119.99647 * 2 1 4 4 C 1.38242 * 119.99731 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00105 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99896 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47354 * 24.99500 * 6 5 4 8 8 O 1.42901 * 109.47107 * 144.99284 * 6 5 4 9 9 C 1.52995 * 109.47228 * 264.99427 * 6 5 4 10 10 H 1.09002 * 109.46830 * 54.99943 * 9 6 5 11 11 C 1.53000 * 109.47187 * 295.00451 * 9 6 5 12 12 N 1.46496 * 109.47630 * 175.00091 * 9 6 5 13 13 C 1.34777 * 120.00258 * 205.00405 * 12 9 6 14 14 O 1.21279 * 120.00166 * 359.97438 * 13 12 9 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 9 16 16 C 1.53002 * 109.46925 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47300 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99822 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00355 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99771 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47174 * 89.99890 * 21 19 17 23 23 H 1.48501 * 109.47062 * 209.99841 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99640 * 21 19 17 25 25 C 1.38238 * 120.00112 * 0.26799 * 5 4 3 26 26 C 1.38233 * 119.99788 * 359.52165 * 25 5 4 27 27 H 1.09003 * 109.47166 * 90.00553 * 1 2 3 28 28 H 1.09004 * 109.47096 * 209.99911 * 1 2 3 29 29 H 1.08994 * 109.47714 * 329.99932 * 1 2 3 30 30 H 1.07998 * 120.00455 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99501 * 179.97438 * 4 3 2 32 32 H 0.96698 * 114.00082 * 60.00326 * 8 6 5 33 33 H 1.08992 * 109.47302 * 59.99702 * 11 9 6 34 34 H 1.09006 * 109.47229 * 180.02562 * 11 9 6 35 35 H 1.09002 * 109.46821 * 299.99498 * 11 9 6 36 36 H 0.96999 * 119.99694 * 24.99795 * 12 9 6 37 37 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 38 38 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 39 39 H 1.09004 * 109.46930 * 299.99901 * 16 15 13 40 40 H 1.09004 * 109.47059 * 59.99503 * 16 15 13 41 41 H 0.96991 * 119.99891 * 179.97438 * 20 19 17 42 42 H 1.07995 * 120.00239 * 179.73224 * 25 5 4 43 43 H 1.07999 * 120.00353 * 180.27350 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7786 0.0002 0.0028 7 1 6.1416 0.9318 0.4368 8 8 6.2544 -1.1030 0.7765 9 6 6.2898 -0.1263 -1.4337 10 1 5.8555 0.6650 -2.0448 11 6 5.8854 -1.4885 -2.0008 12 7 7.7498 -0.0065 -1.4450 13 6 8.3829 0.4136 -2.5581 14 8 7.7440 0.6920 -3.5507 15 6 9.8848 0.5374 -2.5694 16 6 10.3457 1.0294 -3.9429 17 6 11.8476 1.1526 -3.9545 18 1 12.4165 0.9043 -3.0707 19 6 12.4954 1.5812 -5.0936 20 7 13.8061 1.6892 -5.1035 21 14 11.5113 2.0099 -6.6224 22 1 11.1457 3.4488 -6.5884 23 1 12.3295 1.7355 -7.8309 24 1 10.2763 1.1862 -6.6633 25 6 3.5806 -1.1971 -0.0035 26 6 2.1982 -1.1971 0.0004 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6581 2.1325 -0.0004 31 1 4.1204 2.1326 0.0001 32 1 5.9694 -1.9663 0.4473 33 1 4.7992 -1.5777 -1.9925 34 1 6.2500 -1.5788 -3.0242 35 1 6.3196 -2.2798 -1.3897 36 1 8.2608 -0.2294 -0.6512 37 1 10.1966 1.2490 -1.8049 38 1 10.3311 -0.4356 -2.3639 39 1 10.0340 0.3175 -4.7073 40 1 9.8993 2.0023 -4.1489 41 1 14.2618 1.9904 -5.9050 42 1 4.1206 -2.1323 -0.0070 43 1 1.6582 -2.1324 0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812573856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:02 Heat of formation + Delta-G solvation = -83.066392 kcal Electronic energy + Delta-G solvation = -22651.378596 eV Core-core repulsion = 19274.620606 eV Total energy + Delta-G solvation = -3376.757990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50669 -39.24626 -37.67636 -34.48841 -33.45304 -33.25925 -31.48540 -31.30478 -30.30351 -28.26115 -26.31038 -25.37209 -22.99514 -22.26179 -21.06026 -20.55937 -19.67756 -17.97419 -17.32964 -16.32693 -16.15734 -15.91246 -15.48883 -15.15773 -15.01787 -14.52717 -14.18103 -14.09237 -13.85555 -13.77643 -13.40252 -12.94316 -12.64682 -12.57096 -12.53859 -12.41867 -12.10705 -11.94587 -11.64197 -11.39968 -11.37973 -11.18633 -10.94365 -10.45441 -10.13662 -10.02610 -9.77002 -9.25960 -9.20698 -9.14665 -9.02036 -8.72807 -8.49283 -6.01563 -4.00153 0.93688 1.07280 3.13213 3.25269 3.38756 3.45154 3.50366 3.56290 4.10818 4.35494 4.43266 4.51444 4.52117 4.61591 4.67857 4.77239 4.99074 5.09878 5.14127 5.21204 5.30743 5.33847 5.39342 5.41045 5.50345 5.56752 5.72922 5.73487 5.87148 6.04624 6.08083 6.11869 6.13142 6.24651 6.25266 6.63207 6.66521 6.72837 7.22391 7.38169 7.45348 7.78879 7.83627 8.52000 8.68146 9.01834 9.61513 11.11296 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031534 B = 0.002768 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.718238 B =10113.565985 C =10524.681520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.118 4.118 4 C -0.103 4.103 5 C -0.116 4.116 6 C 0.142 3.858 7 H 0.115 0.885 8 O -0.551 6.551 9 C 0.116 3.884 10 H 0.094 0.906 11 C -0.173 4.173 12 N -0.734 5.734 13 C 0.511 3.489 14 O -0.542 6.542 15 C -0.122 4.122 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.073 0.927 19 C 0.068 3.932 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.261 1.261 25 C -0.104 4.104 26 C -0.119 4.119 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.374 0.626 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.403 0.597 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.263 0.737 42 H 0.121 0.879 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.226 -6.162 14.081 30.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.121 4.121 5 C -0.117 4.117 6 C 0.082 3.918 7 H 0.132 0.868 8 O -0.358 6.358 9 C 0.010 3.990 10 H 0.112 0.888 11 C -0.231 4.231 12 N -0.388 5.388 13 C 0.300 3.700 14 O -0.418 6.418 15 C -0.162 4.162 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.186 1.186 25 C -0.122 4.122 26 C -0.137 4.137 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.223 0.777 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.238 0.762 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.139 0.861 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -26.254 -5.432 13.573 30.050 hybrid contribution -0.410 -0.259 -0.812 0.946 sum -26.665 -5.691 12.760 30.104 Atomic orbital electron populations 1.20806 0.91170 1.02792 1.02442 1.19968 0.96159 0.93244 0.99287 1.21038 0.94050 0.97675 1.00852 1.21012 0.94308 0.97547 0.99215 1.20358 0.95866 0.93944 1.01528 1.21108 0.88595 0.91324 0.90773 0.86780 1.86622 1.76603 1.16819 1.55720 1.21430 0.82369 0.99262 0.95899 0.88767 1.22288 1.01599 0.96571 1.02669 1.46165 1.06249 1.70099 1.16257 1.21566 0.91747 0.74778 0.81939 1.90646 1.68555 1.49037 1.33528 1.21670 0.88120 1.03216 1.03201 1.19364 0.96561 0.96659 0.91014 1.21123 0.89800 1.45202 1.00101 0.90922 1.24978 0.94752 0.94831 0.98741 1.69912 1.07631 1.47650 1.29075 0.86790 0.80708 0.79441 0.82571 1.20261 1.21467 1.18557 1.20866 0.94261 0.97365 0.99736 1.20991 0.93968 0.97635 1.01129 0.91062 0.91532 0.91506 0.85889 0.85683 0.77698 0.91366 0.91182 0.92385 0.76229 0.89608 0.89592 0.95887 0.96314 0.92739 0.86073 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.09 -0.68 5.88 -104.62 -0.62 -1.30 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 4 C -0.10 -0.92 9.68 -39.58 -0.38 -1.31 16 5 C -0.12 -1.06 4.73 -104.63 -0.49 -1.55 16 6 C 0.14 1.34 3.16 -27.89 -0.09 1.25 16 7 H 0.11 1.09 8.05 -51.93 -0.42 0.67 16 8 O -0.55 -5.07 12.77 -35.23 -0.45 -5.52 16 9 C 0.12 1.36 2.44 -67.94 -0.17 1.19 16 10 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 11 C -0.17 -1.84 8.38 37.16 0.31 -1.53 16 12 N -0.73 -9.83 5.06 -53.81 -0.27 -10.10 16 13 C 0.51 9.30 7.79 -10.98 -0.09 9.21 16 14 O -0.54 -11.94 15.65 5.56 0.09 -11.85 16 15 C -0.12 -2.39 5.64 -27.88 -0.16 -2.55 16 16 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 17 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 21 Si 0.88 22.79 27.47 -169.99 -4.67 18.12 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 25 C -0.10 -0.85 7.38 -39.58 -0.29 -1.14 16 26 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.37 2.50 5.54 45.56 0.25 2.75 16 33 H 0.07 0.63 5.91 -51.93 -0.31 0.32 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.50 6.72 -51.93 -0.35 0.16 16 36 H 0.40 4.58 8.38 -40.82 -0.34 4.23 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 40 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 42 H 0.12 0.75 6.16 -52.49 -0.32 0.43 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -34.90 350.85 -8.17 -43.07 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.03 Total: 2.70 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.90 Total: -14.25 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.50 Total: -37.55 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.36 Total: -17.37 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.67 Total: 18.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.90 -8.17 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812573856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.993 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds