Wall clock time and date at job start Tue Mar 31 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38237 * 119.99647 * 2 1 4 4 C 1.38242 * 119.99731 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00105 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99896 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47354 * 24.99500 * 6 5 4 8 8 O 1.42901 * 109.47107 * 144.99284 * 6 5 4 9 9 C 1.52995 * 109.47228 * 264.99427 * 6 5 4 10 10 H 1.09002 * 109.46830 * 54.99943 * 9 6 5 11 11 C 1.53000 * 109.47187 * 295.00451 * 9 6 5 12 12 N 1.46496 * 109.47630 * 175.00091 * 9 6 5 13 13 C 1.34777 * 120.00258 * 205.00405 * 12 9 6 14 14 O 1.21279 * 120.00166 * 359.97438 * 13 12 9 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 9 16 16 C 1.53002 * 109.46925 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47300 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99822 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00355 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99771 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47174 * 89.99890 * 21 19 17 23 23 H 1.48501 * 109.47062 * 209.99841 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99640 * 21 19 17 25 25 C 1.38238 * 120.00112 * 0.26799 * 5 4 3 26 26 C 1.38233 * 119.99788 * 359.52165 * 25 5 4 27 27 H 1.09003 * 109.47166 * 90.00553 * 1 2 3 28 28 H 1.09004 * 109.47096 * 209.99911 * 1 2 3 29 29 H 1.08994 * 109.47714 * 329.99932 * 1 2 3 30 30 H 1.07998 * 120.00455 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99501 * 179.97438 * 4 3 2 32 32 H 0.96698 * 114.00082 * 60.00326 * 8 6 5 33 33 H 1.08992 * 109.47302 * 59.99702 * 11 9 6 34 34 H 1.09006 * 109.47229 * 180.02562 * 11 9 6 35 35 H 1.09002 * 109.46821 * 299.99498 * 11 9 6 36 36 H 0.96999 * 119.99694 * 24.99795 * 12 9 6 37 37 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 38 38 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 39 39 H 1.09004 * 109.46930 * 299.99901 * 16 15 13 40 40 H 1.09004 * 109.47059 * 59.99503 * 16 15 13 41 41 H 0.96991 * 119.99891 * 179.97438 * 20 19 17 42 42 H 1.07995 * 120.00239 * 179.73224 * 25 5 4 43 43 H 1.07999 * 120.00353 * 180.27350 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7786 0.0002 0.0028 7 1 6.1416 0.9318 0.4368 8 8 6.2544 -1.1030 0.7765 9 6 6.2898 -0.1263 -1.4337 10 1 5.8555 0.6650 -2.0448 11 6 5.8854 -1.4885 -2.0008 12 7 7.7498 -0.0065 -1.4450 13 6 8.3829 0.4136 -2.5581 14 8 7.7440 0.6920 -3.5507 15 6 9.8848 0.5374 -2.5694 16 6 10.3457 1.0294 -3.9429 17 6 11.8476 1.1526 -3.9545 18 1 12.4165 0.9043 -3.0707 19 6 12.4954 1.5812 -5.0936 20 7 13.8061 1.6892 -5.1035 21 14 11.5113 2.0099 -6.6224 22 1 11.1457 3.4488 -6.5884 23 1 12.3295 1.7355 -7.8309 24 1 10.2763 1.1862 -6.6633 25 6 3.5806 -1.1971 -0.0035 26 6 2.1982 -1.1971 0.0004 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6581 2.1325 -0.0004 31 1 4.1204 2.1326 0.0001 32 1 5.9694 -1.9663 0.4473 33 1 4.7992 -1.5777 -1.9925 34 1 6.2500 -1.5788 -3.0242 35 1 6.3196 -2.2798 -1.3897 36 1 8.2608 -0.2294 -0.6512 37 1 10.1966 1.2490 -1.8049 38 1 10.3311 -0.4356 -2.3639 39 1 10.0340 0.3175 -4.7073 40 1 9.8993 2.0023 -4.1489 41 1 14.2618 1.9904 -5.9050 42 1 4.1206 -2.1323 -0.0070 43 1 1.6582 -2.1324 0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812573856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:01 Heat of formation + Delta-G solvation = -107.285122 kcal Electronic energy + Delta-G solvation = -22652.428799 eV Core-core repulsion = 19274.620606 eV Total energy + Delta-G solvation = -3377.808193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36377 -40.38960 -38.52790 -35.71037 -35.41424 -33.90771 -33.36078 -31.92111 -31.45685 -28.92534 -28.03340 -26.25708 -23.67157 -23.58011 -22.24276 -21.46952 -21.11985 -19.25547 -18.70449 -17.82080 -17.02527 -16.89197 -16.45864 -16.29017 -16.09603 -15.97150 -15.38354 -15.01756 -14.73941 -14.55347 -14.52449 -14.42404 -14.28317 -13.52960 -13.43652 -13.39125 -12.99365 -12.95406 -12.85917 -12.55948 -12.52352 -12.11559 -12.03375 -11.96806 -11.81584 -11.77438 -11.40405 -11.25243 -10.78699 -10.71785 -10.14561 -9.83649 -9.43016 -8.31897 -6.34803 0.31880 0.47430 1.32648 1.34368 1.49638 1.68713 2.18500 2.34498 2.77738 3.03582 3.40447 3.61513 3.71230 3.84377 4.01607 4.03868 4.09123 4.11756 4.26403 4.38707 4.41099 4.49705 4.54989 4.63320 4.74768 4.82524 4.83850 4.89538 4.92692 5.02912 5.15060 5.21165 5.25463 5.32999 5.44316 5.45474 5.52692 5.60322 5.61142 5.68971 6.07930 6.23307 6.58871 6.63776 6.71684 7.30429 7.31826 8.83792 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031534 B = 0.002768 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.718238 B =10113.565985 C =10524.681520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.130 4.130 6 C 0.157 3.843 7 H 0.113 0.887 8 O -0.555 6.555 9 C 0.115 3.885 10 H 0.071 0.929 11 C -0.167 4.167 12 N -0.712 5.712 13 C 0.516 3.484 14 O -0.585 6.585 15 C -0.117 4.117 16 C 0.006 3.994 17 C -0.529 4.529 18 H 0.050 0.950 19 C 0.012 3.988 20 N -0.943 5.943 21 Si 0.939 3.061 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.109 4.109 26 C -0.128 4.128 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.386 0.614 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.416 0.584 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.267 0.733 42 H 0.141 0.859 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.289 -7.066 14.976 32.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.131 4.131 6 C 0.098 3.902 7 H 0.130 0.870 8 O -0.364 6.364 9 C 0.010 3.990 10 H 0.090 0.910 11 C -0.225 4.225 12 N -0.365 5.365 13 C 0.304 3.696 14 O -0.465 6.465 15 C -0.157 4.157 16 C -0.032 4.032 17 C -0.567 4.567 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.584 5.584 21 Si 0.764 3.236 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.127 4.127 26 C -0.146 4.146 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.237 0.763 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.254 0.746 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.158 0.842 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -28.329 -6.362 14.523 32.464 hybrid contribution 0.207 -0.015 -0.985 1.007 sum -28.122 -6.378 13.538 31.856 Atomic orbital electron populations 1.20847 0.89621 1.03685 1.02970 1.20323 0.97485 0.93182 0.98434 1.21278 0.93982 0.98646 1.00994 1.21206 0.94941 0.97888 0.99657 1.20357 0.95440 0.94532 1.02794 1.20853 0.88974 0.91534 0.88883 0.86958 1.86613 1.76708 1.17423 1.55629 1.21558 0.80662 0.99313 0.97440 0.91046 1.22232 1.02727 0.96441 1.01117 1.45918 1.07325 1.68042 1.15188 1.21178 0.91024 0.74861 0.82490 1.90634 1.69103 1.51399 1.35349 1.21502 0.89604 1.04279 1.00331 1.19213 0.94001 0.95949 0.94041 1.21436 0.91699 1.44321 0.99260 0.93178 1.25818 0.95687 0.95018 1.01997 1.70022 1.09161 1.48961 1.30243 0.85814 0.79182 0.79436 0.79181 1.19361 1.20304 1.18636 1.21132 0.94701 0.97736 0.99152 1.21309 0.94090 0.98491 1.00674 0.90610 0.90466 0.90860 0.84704 0.85424 0.76308 0.89797 0.94178 0.90007 0.74636 0.88026 0.88035 0.97243 0.97349 0.92370 0.84161 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.23 0.71 -0.31 16 2 C -0.09 -1.31 5.88 -19.87 -0.12 -1.43 16 3 C -0.13 -2.02 9.70 22.27 0.22 -1.81 16 4 C -0.12 -2.04 9.68 22.27 0.22 -1.83 16 5 C -0.13 -2.18 4.73 -19.87 -0.09 -2.28 16 6 C 0.16 2.72 3.16 29.84 0.09 2.81 16 7 H 0.11 1.99 8.05 -2.39 -0.02 1.97 16 8 O -0.56 -8.73 12.77 -148.98 -1.90 -10.63 16 9 C 0.12 2.56 2.44 44.99 0.11 2.67 16 10 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 11 C -0.17 -3.27 8.38 71.98 0.60 -2.67 16 12 N -0.71 -18.03 5.06 -442.54 -2.24 -20.27 16 13 C 0.52 18.41 7.79 87.66 0.68 19.10 16 14 O -0.58 -25.89 15.65 -3.03 -0.05 -25.93 16 15 C -0.12 -4.50 5.64 29.85 0.17 -4.33 16 16 C 0.01 0.30 3.33 29.85 0.10 0.40 16 17 C -0.53 -30.90 9.66 25.60 0.25 -30.65 16 18 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 19 C 0.01 0.75 5.47 84.65 0.46 1.21 16 20 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 21 Si 0.94 47.27 27.47 68.60 1.88 49.15 16 22 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.26 -13.13 6.54 99.48 0.65 -12.48 16 25 C -0.11 -1.53 7.38 22.27 0.16 -1.36 16 26 C -0.13 -1.70 9.70 22.27 0.22 -1.48 16 27 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.53 8.09 -2.39 -0.02 0.51 16 29 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 30 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.39 3.88 5.54 -74.06 -0.41 3.47 16 33 H 0.08 1.38 5.91 -2.39 -0.01 1.37 16 34 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.08 1.19 6.72 -2.39 -0.02 1.17 16 36 H 0.42 8.49 8.38 -92.71 -0.78 7.71 16 37 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 39 H 0.01 0.49 7.16 -2.38 -0.02 0.47 16 40 H 0.01 0.43 7.53 -2.39 -0.02 0.41 16 41 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.14 1.30 6.16 -2.91 -0.02 1.28 16 43 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -75.59 350.85 1.55 -74.03 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.22 Total: 14.86 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 3.78 Total: -21.97 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -1.94 Total: -79.52 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.95 Total: -36.57 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.88 Total: 49.15 kcal Total: -75.59 1.55 -74.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812573856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.251 kcal (2) G-P(sol) polarization free energy of solvation -75.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds