Wall clock time and date at job start Tue Mar 31 2020 06:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38285 * 119.92820 * 2 1 4 4 C 1.38108 * 120.07200 * 179.74304 * 3 2 1 5 5 C 1.38871 * 119.92862 * 0.25421 * 4 3 2 6 6 N 1.39918 * 120.07306 * 179.97438 * 5 4 3 7 7 C 1.46509 * 120.00381 * 172.45017 * 6 5 4 8 8 C 1.50692 * 109.46936 * 94.00133 * 7 6 5 9 9 H 1.08004 * 120.00632 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99832 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00220 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99862 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46805 * 90.00078 * 12 10 8 14 14 H 1.48504 * 109.46777 * 209.99630 * 12 10 8 15 15 H 1.48492 * 109.47067 * 329.99633 * 12 10 8 16 16 C 1.34782 * 119.99992 * 352.45377 * 6 5 4 17 17 O 1.21287 * 119.99879 * 2.68451 * 16 6 5 18 18 C 1.50698 * 119.99756 * 182.68906 * 16 6 5 19 19 H 1.09000 * 109.47719 * 21.70018 * 18 16 6 20 20 O 1.42900 * 109.46771 * 141.69584 * 18 16 6 21 21 C 1.52996 * 109.47100 * 261.69392 * 18 16 6 22 22 C 1.52999 * 109.47370 * 65.07592 * 21 18 16 23 23 C 1.53000 * 109.47044 * 185.07401 * 21 18 16 24 24 C 1.38880 * 119.85616 * 359.97438 * 5 4 3 25 25 C 1.38104 * 119.93324 * 0.02562 * 24 5 4 26 26 H 1.09005 * 109.47046 * 90.00082 * 1 2 3 27 27 H 1.09001 * 109.47195 * 209.99757 * 1 2 3 28 28 H 1.09002 * 109.47600 * 330.00253 * 1 2 3 29 29 H 1.08004 * 119.96385 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.03670 * 180.27768 * 4 3 2 31 31 H 1.08996 * 109.47248 * 214.00611 * 7 6 5 32 32 H 1.09005 * 109.46355 * 334.00186 * 7 6 5 33 33 H 0.97001 * 120.00167 * 180.02562 * 11 10 8 34 34 H 0.96702 * 114.00331 * 59.99970 * 20 18 16 35 35 H 1.09004 * 109.47157 * 305.07576 * 21 18 16 36 36 H 1.08999 * 109.46920 * 305.36530 * 22 21 18 37 37 H 1.08997 * 109.46934 * 65.36285 * 22 21 18 38 38 H 1.08998 * 109.47584 * 185.36879 * 22 21 18 39 39 H 1.09000 * 109.47253 * 60.00768 * 23 21 18 40 40 H 1.09004 * 109.47160 * 179.97438 * 23 21 18 41 41 H 1.08991 * 109.47258 * 299.99836 * 23 21 18 42 42 H 1.08005 * 120.03367 * 179.97438 * 24 5 4 43 43 H 1.07998 * 119.97140 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0054 5 6 4.2739 0.0002 0.0054 6 7 5.6731 0.0001 0.0103 7 6 6.4051 -1.2579 0.1771 8 6 6.7468 -1.8235 -1.1772 9 1 6.4490 -1.2983 -2.0727 10 6 7.4398 -3.0116 -1.2732 11 7 7.8030 -3.6511 -0.1829 12 14 7.8628 -3.7131 -2.9521 13 1 9.1846 -3.1943 -3.3866 14 1 7.9152 -5.1950 -2.8704 15 1 6.8249 -3.3079 -3.9337 16 6 6.3475 1.1576 -0.1384 17 8 5.7423 2.2049 -0.2275 18 6 7.8534 1.1503 -0.1939 19 1 8.2016 0.1589 -0.4836 20 8 8.2993 2.1108 -1.1534 21 6 8.4163 1.5063 1.1835 22 6 8.0446 0.4110 2.1850 23 6 9.9394 1.6230 1.0974 24 6 3.5780 -1.2017 0.0006 25 6 2.1970 -1.1984 -0.0047 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6552 2.1328 0.0004 30 1 4.1162 2.1382 0.0099 31 1 7.3226 -1.0732 0.7358 32 1 5.7848 -1.9696 0.7221 33 1 8.2908 -4.4868 -0.2504 34 1 8.0253 3.0176 -0.9589 35 1 7.9970 2.4571 1.5127 36 1 6.9648 0.2621 2.1764 37 1 8.5418 -0.5185 1.9080 38 1 8.3621 0.7092 3.1842 39 1 10.2043 2.4034 0.3840 40 1 10.3404 1.8770 2.0786 41 1 10.3586 0.6722 0.7683 42 1 4.1163 -2.1380 0.0002 43 1 1.6552 -2.1326 -0.0081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813427243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:35 Heat of formation + Delta-G solvation = -60.149114 kcal Electronic energy + Delta-G solvation = -24376.820262 eV Core-core repulsion = 21001.056040 eV Total energy + Delta-G solvation = -3375.764222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55134 -38.50030 -36.66416 -35.61402 -33.85894 -32.87301 -31.41637 -30.36815 -27.81290 -27.40698 -26.65676 -25.28100 -23.46093 -21.87248 -21.41754 -20.34351 -19.25876 -17.14111 -16.99169 -16.53701 -16.10137 -15.15964 -14.85293 -14.70552 -14.42688 -14.24265 -13.73320 -13.43956 -13.21943 -13.10376 -12.89242 -12.62211 -12.48950 -12.13036 -12.01100 -11.92776 -11.82173 -11.47717 -11.46715 -11.14534 -11.04130 -10.85706 -10.81786 -10.57452 -10.49473 -10.25297 -10.03991 -9.87065 -9.09565 -8.70436 -8.52611 -8.36455 -7.14964 -6.29905 -4.38629 1.78487 1.98959 3.06604 3.19539 3.26675 3.31946 3.57718 4.25516 4.40691 4.69689 4.87464 5.03373 5.06150 5.21324 5.29446 5.33852 5.47497 5.57238 5.65964 5.78370 5.79764 5.87404 5.95857 5.99084 6.09381 6.12148 6.13697 6.19020 6.24180 6.33239 6.49530 6.51466 6.59599 6.74980 6.89481 6.95217 7.03882 7.14904 7.27126 7.63503 7.78287 7.84862 7.87040 8.05011 8.59672 8.73349 9.29951 10.75936 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.007126 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.269130 B = 3928.595198 C = 5654.597511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.131 4.131 3 C -0.107 4.107 4 C -0.176 4.176 5 C 0.162 3.838 6 N -0.527 5.527 7 C 0.212 3.788 8 C -0.544 4.544 9 H 0.063 0.937 10 C 0.070 3.930 11 N -0.888 5.888 12 Si 0.898 3.102 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.497 3.503 17 O -0.547 6.547 18 C 0.093 3.907 19 H 0.147 0.853 20 O -0.538 6.538 21 C -0.117 4.117 22 C -0.156 4.156 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.103 4.103 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.177 0.823 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.268 0.732 34 H 0.373 0.627 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.138 0.862 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 6.860 4.029 8.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.132 4.132 3 C -0.126 4.126 4 C -0.195 4.195 5 C 0.066 3.934 6 N -0.246 5.246 7 C 0.094 3.906 8 C -0.582 4.582 9 H 0.082 0.918 10 C -0.134 4.134 11 N -0.525 5.525 12 Si 0.725 3.275 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.197 1.197 16 C 0.287 3.713 17 O -0.428 6.428 18 C 0.031 3.969 19 H 0.164 0.836 20 O -0.342 6.342 21 C -0.136 4.136 22 C -0.213 4.213 23 C -0.196 4.196 24 C -0.162 4.162 25 C -0.122 4.122 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.132 0.868 30 H 0.193 0.807 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.221 0.779 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.156 0.844 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.616 6.669 3.779 8.475 hybrid contribution -0.104 -0.315 -0.682 0.759 sum -3.720 6.354 3.097 7.988 Atomic orbital electron populations 1.20664 0.92062 1.01857 1.01492 1.19787 0.95446 0.93517 1.04434 1.20895 0.93993 0.96788 1.00934 1.22682 0.94331 1.00178 1.02301 1.18122 0.82922 0.94233 0.98108 1.46067 1.04055 1.10217 1.64291 1.20071 0.92917 0.78986 0.98641 1.21413 1.37274 1.07362 0.92198 0.91838 1.24898 0.95046 0.96233 0.97205 1.69907 1.38176 1.16874 1.27565 0.86480 0.79176 0.78115 0.83769 1.20206 1.20950 1.19667 1.21651 0.91611 0.82907 0.75112 1.90243 1.68909 1.32372 1.51301 1.22256 0.88667 0.96240 0.89745 0.83606 1.86651 1.77185 1.20011 1.50387 1.21680 0.97424 0.99953 0.94533 1.22046 1.02164 0.98959 0.98121 1.21723 0.93836 1.02760 1.01280 1.21110 0.94068 0.97729 1.03261 1.20728 0.93456 0.97079 1.00936 0.92040 0.92201 0.92286 0.86830 0.80668 0.92123 0.93396 0.92272 0.77916 0.90985 0.92286 0.90584 0.92539 0.92101 0.92810 0.91988 0.84421 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.01 36.01 0.36 -0.89 16 2 C -0.13 -2.08 5.88 -104.59 -0.62 -2.70 16 3 C -0.11 -1.81 9.69 -39.61 -0.38 -2.20 16 4 C -0.18 -3.44 9.03 -39.39 -0.36 -3.79 16 5 C 0.16 3.39 6.49 -83.69 -0.54 2.85 16 6 N -0.53 -11.25 2.36 -114.73 -0.27 -11.52 16 7 C 0.21 4.82 3.51 -5.19 -0.02 4.81 16 8 C -0.54 -13.78 8.49 -34.44 -0.29 -14.07 16 9 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -23.22 13.29 55.43 0.74 -22.48 16 12 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.50 10.14 5.86 -10.98 -0.06 10.08 16 17 O -0.55 -11.47 12.97 -10.61 -0.14 -11.60 16 18 C 0.09 1.70 2.57 -27.89 -0.07 1.63 16 19 H 0.15 3.04 5.69 -51.93 -0.30 2.74 16 20 O -0.54 -9.42 12.39 -51.39 -0.64 -10.06 16 21 C -0.12 -1.77 2.66 -90.62 -0.24 -2.01 16 22 C -0.16 -2.41 7.68 37.16 0.29 -2.12 16 23 C -0.14 -1.84 8.99 37.16 0.33 -1.51 16 24 C -0.14 -2.80 9.15 -39.39 -0.36 -3.16 16 25 C -0.10 -1.76 9.69 -39.61 -0.38 -2.14 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 30 H 0.18 3.59 4.57 -56.06 -0.26 3.33 16 31 H 0.06 1.35 3.45 -51.93 -0.18 1.17 16 32 H 0.05 1.15 6.32 -51.93 -0.33 0.82 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.36 16 34 H 0.37 5.36 8.67 45.56 0.39 5.75 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.00 6.08 -51.93 -0.32 0.69 16 37 H 0.08 1.27 6.95 -51.93 -0.36 0.90 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.78 7.56 -51.93 -0.39 0.38 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.14 2.87 6.29 -52.48 -0.33 2.54 16 43 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -27.60 341.73 -8.03 -35.63 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -5.41 Total: 13.10 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.45 Total: -13.53 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.47 Total: -34.00 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.77 Total: -21.66 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.60 -8.03 -35.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813427243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.516 kcal (2) G-P(sol) polarization free energy of solvation -27.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds