Wall clock time and date at job start Tue Mar 31 2020 06:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38285 * 119.92820 * 2 1 4 4 C 1.38108 * 120.07200 * 179.74304 * 3 2 1 5 5 C 1.38871 * 119.92862 * 0.25421 * 4 3 2 6 6 N 1.39918 * 120.07306 * 179.97438 * 5 4 3 7 7 C 1.46509 * 120.00381 * 172.45017 * 6 5 4 8 8 C 1.50692 * 109.46936 * 94.00133 * 7 6 5 9 9 H 1.08004 * 120.00632 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99832 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00220 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99862 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46805 * 90.00078 * 12 10 8 14 14 H 1.48504 * 109.46777 * 209.99630 * 12 10 8 15 15 H 1.48492 * 109.47067 * 329.99633 * 12 10 8 16 16 C 1.34782 * 119.99992 * 352.45377 * 6 5 4 17 17 O 1.21287 * 119.99879 * 2.68451 * 16 6 5 18 18 C 1.50698 * 119.99756 * 182.68906 * 16 6 5 19 19 H 1.09000 * 109.47719 * 21.70018 * 18 16 6 20 20 O 1.42900 * 109.46771 * 141.69584 * 18 16 6 21 21 C 1.52996 * 109.47100 * 261.69392 * 18 16 6 22 22 C 1.52999 * 109.47370 * 65.07592 * 21 18 16 23 23 C 1.53000 * 109.47044 * 185.07401 * 21 18 16 24 24 C 1.38880 * 119.85616 * 359.97438 * 5 4 3 25 25 C 1.38104 * 119.93324 * 0.02562 * 24 5 4 26 26 H 1.09005 * 109.47046 * 90.00082 * 1 2 3 27 27 H 1.09001 * 109.47195 * 209.99757 * 1 2 3 28 28 H 1.09002 * 109.47600 * 330.00253 * 1 2 3 29 29 H 1.08004 * 119.96385 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.03670 * 180.27768 * 4 3 2 31 31 H 1.08996 * 109.47248 * 214.00611 * 7 6 5 32 32 H 1.09005 * 109.46355 * 334.00186 * 7 6 5 33 33 H 0.97001 * 120.00167 * 180.02562 * 11 10 8 34 34 H 0.96702 * 114.00331 * 59.99970 * 20 18 16 35 35 H 1.09004 * 109.47157 * 305.07576 * 21 18 16 36 36 H 1.08999 * 109.46920 * 305.36530 * 22 21 18 37 37 H 1.08997 * 109.46934 * 65.36285 * 22 21 18 38 38 H 1.08998 * 109.47584 * 185.36879 * 22 21 18 39 39 H 1.09000 * 109.47253 * 60.00768 * 23 21 18 40 40 H 1.09004 * 109.47160 * 179.97438 * 23 21 18 41 41 H 1.08991 * 109.47258 * 299.99836 * 23 21 18 42 42 H 1.08005 * 120.03367 * 179.97438 * 24 5 4 43 43 H 1.07998 * 119.97140 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0054 5 6 4.2739 0.0002 0.0054 6 7 5.6731 0.0001 0.0103 7 6 6.4051 -1.2579 0.1771 8 6 6.7468 -1.8235 -1.1772 9 1 6.4490 -1.2983 -2.0727 10 6 7.4398 -3.0116 -1.2732 11 7 7.8030 -3.6511 -0.1829 12 14 7.8628 -3.7131 -2.9521 13 1 9.1846 -3.1943 -3.3866 14 1 7.9152 -5.1950 -2.8704 15 1 6.8249 -3.3079 -3.9337 16 6 6.3475 1.1576 -0.1384 17 8 5.7423 2.2049 -0.2275 18 6 7.8534 1.1503 -0.1939 19 1 8.2016 0.1589 -0.4836 20 8 8.2993 2.1108 -1.1534 21 6 8.4163 1.5063 1.1835 22 6 8.0446 0.4110 2.1850 23 6 9.9394 1.6230 1.0974 24 6 3.5780 -1.2017 0.0006 25 6 2.1970 -1.1984 -0.0047 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6552 2.1328 0.0004 30 1 4.1162 2.1382 0.0099 31 1 7.3226 -1.0732 0.7358 32 1 5.7848 -1.9696 0.7221 33 1 8.2908 -4.4868 -0.2504 34 1 8.0253 3.0176 -0.9589 35 1 7.9970 2.4571 1.5127 36 1 6.9648 0.2621 2.1764 37 1 8.5418 -0.5185 1.9080 38 1 8.3621 0.7092 3.1842 39 1 10.2043 2.4034 0.3840 40 1 10.3404 1.8770 2.0786 41 1 10.3586 0.6722 0.7683 42 1 4.1163 -2.1380 0.0002 43 1 1.6552 -2.1326 -0.0081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813427243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:34 Heat of formation + Delta-G solvation = -75.207298 kcal Electronic energy + Delta-G solvation = -24377.473234 eV Core-core repulsion = 21001.056040 eV Total energy + Delta-G solvation = -3376.417194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.10418 -39.90710 -38.08228 -37.24946 -35.17920 -34.75868 -32.79283 -31.80592 -29.47294 -28.86158 -27.90813 -26.62436 -25.26217 -23.35813 -22.79918 -21.67608 -20.77538 -18.87751 -18.62601 -18.24451 -17.53048 -16.59633 -16.53894 -16.26403 -15.90807 -15.68469 -15.13397 -14.67535 -14.61407 -14.42933 -14.40861 -14.32688 -13.79061 -13.63922 -13.35801 -13.28878 -12.99214 -12.96678 -12.88296 -12.73295 -12.64425 -12.33543 -12.25526 -12.06569 -11.91860 -11.85816 -11.71025 -11.26612 -10.75002 -10.64625 -10.08573 -9.80525 -8.69998 -8.25337 -6.42123 0.33622 0.54650 1.37096 1.39199 1.46797 1.54298 2.01168 2.36500 2.95892 3.02560 3.28988 3.41871 3.74510 3.92166 4.04439 4.10108 4.21874 4.27860 4.42898 4.50971 4.53249 4.59302 4.67708 4.76279 4.83851 4.89883 4.91981 4.92560 5.01764 5.08510 5.14704 5.18371 5.25131 5.34307 5.40352 5.45435 5.53640 5.61799 5.73836 5.81163 5.92354 6.28782 6.37158 6.60055 6.68913 7.03802 7.28976 8.77436 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.007126 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.269130 B = 3928.595198 C = 5654.597511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.122 4.122 3 C -0.106 4.106 4 C -0.190 4.190 5 C 0.127 3.873 6 N -0.532 5.532 7 C 0.229 3.771 8 C -0.551 4.551 9 H 0.042 0.958 10 C 0.034 3.966 11 N -0.909 5.909 12 Si 0.950 3.050 13 H -0.271 1.271 14 H -0.275 1.275 15 H -0.278 1.278 16 C 0.490 3.510 17 O -0.556 6.556 18 C 0.099 3.901 19 H 0.117 0.883 20 O -0.545 6.545 21 C -0.109 4.109 22 C -0.151 4.151 23 C -0.133 4.133 24 C -0.161 4.161 25 C -0.103 4.103 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.167 0.833 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.271 0.729 34 H 0.388 0.612 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.116 0.884 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.918 7.660 4.214 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.209 4.209 5 C 0.032 3.968 6 N -0.252 5.252 7 C 0.110 3.890 8 C -0.590 4.590 9 H 0.060 0.940 10 C -0.168 4.168 11 N -0.547 5.547 12 Si 0.775 3.225 13 H -0.196 1.196 14 H -0.200 1.200 15 H -0.204 1.204 16 C 0.281 3.719 17 O -0.438 6.438 18 C 0.037 3.963 19 H 0.135 0.865 20 O -0.351 6.351 21 C -0.128 4.128 22 C -0.208 4.208 23 C -0.190 4.190 24 C -0.181 4.181 25 C -0.122 4.122 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.162 0.838 30 H 0.183 0.817 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.238 0.762 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.134 0.866 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.756 7.482 3.968 9.713 hybrid contribution 0.128 -0.524 -0.740 0.916 sum -4.628 6.957 3.228 8.958 Atomic orbital electron populations 1.20741 0.88573 1.03627 1.02867 1.20263 0.97858 0.92424 1.01702 1.21260 0.92966 0.98667 0.99564 1.22673 0.95727 0.99117 1.03408 1.18449 0.82836 0.95300 1.00179 1.46012 1.04560 1.09857 1.64776 1.19735 0.92729 0.79353 0.97186 1.21469 1.37398 1.07630 0.92473 0.93958 1.25485 0.94942 0.96418 0.99977 1.69966 1.38608 1.17223 1.28873 0.85678 0.78746 0.77870 0.80209 1.19649 1.19973 1.20359 1.22075 0.92505 0.82564 0.74765 1.90230 1.69360 1.32362 1.51892 1.22116 0.87229 0.95338 0.91649 0.86497 1.86608 1.77059 1.20915 1.50550 1.21661 0.98741 1.00149 0.92229 1.21985 1.00574 0.98459 0.99830 1.21699 0.92043 1.02357 1.02951 1.21093 0.95506 0.96538 1.04987 1.21066 0.92322 0.98992 0.99803 0.90667 0.90642 0.90447 0.83836 0.81705 0.91701 0.95209 0.91942 0.76232 0.89680 0.94397 0.92296 0.89692 0.91409 0.90274 0.93283 0.86615 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 10.01 71.24 0.71 -1.31 16 2 C -0.12 -3.57 5.88 -19.84 -0.12 -3.69 16 3 C -0.11 -3.40 9.69 22.25 0.22 -3.18 16 4 C -0.19 -7.49 9.03 22.39 0.20 -7.29 16 5 C 0.13 5.52 6.49 38.16 0.25 5.77 16 6 N -0.53 -23.86 2.36 -635.29 -1.50 -25.37 16 7 C 0.23 11.01 3.51 85.63 0.30 11.31 16 8 C -0.55 -29.14 8.49 25.60 0.22 -28.92 16 9 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 10 C 0.03 1.76 5.46 84.65 0.46 2.22 16 11 N -0.91 -48.51 13.29 21.45 0.28 -48.23 16 12 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 C 0.49 20.67 5.86 87.66 0.51 21.18 16 17 O -0.56 -23.79 12.97 12.40 0.16 -23.63 16 18 C 0.10 3.70 2.57 29.85 0.08 3.78 16 19 H 0.12 5.11 5.69 -2.39 -0.01 5.09 16 20 O -0.55 -19.10 12.39 -133.53 -1.65 -20.75 16 21 C -0.11 -3.24 2.66 -10.80 -0.03 -3.27 16 22 C -0.15 -4.70 7.68 71.98 0.55 -4.15 16 23 C -0.13 -3.36 8.99 71.98 0.65 -2.71 16 24 C -0.16 -6.58 9.15 22.39 0.20 -6.38 16 25 C -0.10 -3.42 9.69 22.25 0.22 -3.20 16 26 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 28 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 29 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.17 6.85 4.57 -59.44 -0.27 6.58 16 31 H 0.07 3.05 3.45 -2.39 -0.01 3.04 16 32 H 0.03 1.52 6.32 -2.38 -0.02 1.51 16 33 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 34 H 0.39 10.91 8.67 -74.06 -0.64 10.27 16 35 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.04 1.32 6.08 -2.39 -0.01 1.31 16 37 H 0.06 2.02 6.95 -2.39 -0.02 2.00 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.07 1.61 7.56 -2.39 -0.02 1.60 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.12 5.16 6.29 -2.91 -0.02 5.14 16 43 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -60.86 341.73 3.87 -57.00 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.13 Total: 36.54 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 4.42 Total: -19.84 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.22 Total: -73.59 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.49 Total: -44.38 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -60.86 3.87 -57.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813427243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.212 kcal (2) G-P(sol) polarization free energy of solvation -60.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds