Wall clock time and date at job start Tue Mar 31 2020 07:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.81708 * 2 1 4 4 C 1.53427 * 109.77635 * 120.78031 * 2 1 3 5 5 N 1.46749 * 108.60369 * 182.87435 * 4 2 1 6 6 C 1.46905 * 110.99835 * 185.02535 * 5 4 2 7 7 C 1.52994 * 109.47325 * 294.11611 * 6 5 4 8 8 O 1.42896 * 109.47330 * 67.71350 * 7 6 5 9 9 C 1.42902 * 113.99850 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46682 * 180.02562 * 9 8 7 11 11 H 1.07992 * 120.00353 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99864 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00230 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99858 * 359.97438 * 12 10 9 15 15 H 1.48493 * 109.47222 * 90.00335 * 14 12 10 16 16 H 1.48505 * 109.46956 * 210.00324 * 14 12 10 17 17 H 1.48497 * 109.47242 * 330.00204 * 14 12 10 18 18 C 1.39850 * 112.13745 * 309.81513 * 5 4 2 19 19 C 1.39149 * 118.59256 * 199.86808 * 18 5 4 20 20 C 1.38066 * 120.24131 * 180.28350 * 19 18 5 21 21 C 1.38260 * 120.11638 * 359.93276 * 20 19 18 22 22 C 1.38173 * 120.02805 * 359.90448 * 21 20 19 23 23 C 1.38780 * 120.20624 * 0.05476 * 22 21 20 24 24 O 1.36158 * 118.74334 * 180.18639 * 23 22 21 25 25 H 1.09004 * 109.46931 * 299.22216 * 1 2 3 26 26 H 1.08999 * 109.47201 * 59.21742 * 1 2 3 27 27 H 1.08995 * 109.47741 * 179.22003 * 1 2 3 28 28 H 1.09008 * 109.46884 * 180.78073 * 3 2 1 29 29 H 1.08996 * 109.46839 * 300.77666 * 3 2 1 30 30 H 1.08999 * 109.47330 * 60.77982 * 3 2 1 31 31 H 1.09003 * 109.61269 * 63.13745 * 4 2 1 32 32 H 1.08998 * 109.61426 * 302.60942 * 4 2 1 33 33 H 1.09001 * 109.46646 * 174.11225 * 6 5 4 34 34 H 1.09003 * 109.46666 * 54.11669 * 6 5 4 35 35 H 1.09008 * 109.46987 * 187.71628 * 7 6 5 36 36 H 1.09000 * 109.47059 * 307.71236 * 7 6 5 37 37 H 1.08997 * 109.47408 * 299.99673 * 9 8 7 38 38 H 1.09001 * 109.47017 * 60.00415 * 9 8 7 39 39 H 0.97001 * 120.00379 * 179.97438 * 13 12 10 40 40 H 1.08003 * 119.87702 * 0.21317 * 19 18 5 41 41 H 1.07997 * 119.94144 * 179.97438 * 20 19 18 42 42 H 1.07994 * 119.98477 * 179.97438 * 21 20 19 43 43 H 1.07998 * 119.89615 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0487 1.4394 0.0000 4 6 2.0491 -0.7389 1.2404 5 7 3.5146 -0.6639 1.2508 6 6 4.0745 -1.4567 2.3536 7 6 3.6652 -0.8330 3.6893 8 8 2.2552 -0.9781 3.8706 9 6 1.7668 -0.4263 5.0949 10 6 0.2768 -0.6351 5.1809 11 1 -0.2450 -1.1385 4.3806 12 6 -0.4204 -0.1826 6.2810 13 7 -1.7206 -0.3653 6.3564 14 14 0.4821 0.6887 7.6652 15 1 0.5127 2.1484 7.3944 16 1 -0.2206 0.4381 8.9492 17 1 1.8717 0.1723 7.7523 18 6 4.0706 -1.0463 0.0259 19 6 5.4075 -1.4306 -0.0076 20 6 5.9926 -1.8090 -1.1995 21 6 5.2516 -1.8093 -2.3668 22 6 3.9225 -1.4324 -2.3421 23 6 3.3268 -1.0515 -1.1479 24 8 2.0143 -0.6895 -1.1572 25 1 -0.3633 0.5017 0.8969 26 1 -0.3633 0.5259 -0.8829 27 1 -0.3634 -1.0275 -0.0140 28 1 3.1386 1.4328 -0.0140 29 1 1.6771 1.9594 -0.8829 30 1 1.6999 1.9513 0.8969 31 1 1.7363 -1.7823 1.2023 32 1 1.6522 -0.2678 2.1397 33 1 5.1617 -1.4694 2.2764 34 1 3.6943 -2.4767 2.2972 35 1 4.1897 -1.3366 4.5014 36 1 3.9246 0.2257 3.6905 37 1 2.2519 -0.9218 5.9359 38 1 1.9869 0.6409 5.1258 39 1 -2.2110 -0.0473 7.1305 40 1 5.9900 -1.4318 0.9019 41 1 7.0308 -2.1060 -1.2200 42 1 5.7115 -2.1053 -3.2980 43 1 3.3455 -1.4338 -3.2551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815062201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:52 Heat of formation + Delta-G solvation = -45.290876 kcal Electronic energy + Delta-G solvation = -24176.767965 eV Core-core repulsion = 20801.648045 eV Total energy + Delta-G solvation = -3375.119920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.18800 -37.79039 -37.65708 -35.94155 -33.35621 -32.71444 -30.43573 -30.23939 -28.42721 -27.64740 -27.19877 -25.22453 -23.06141 -22.56774 -21.93870 -20.95438 -19.17854 -18.09756 -16.96731 -16.63902 -16.14454 -15.72273 -15.36057 -15.04898 -14.78882 -14.37645 -14.28296 -14.04936 -13.93877 -13.49158 -13.06661 -12.77357 -12.54439 -12.27870 -12.13250 -11.98016 -11.91143 -11.76000 -11.70833 -11.41544 -11.23423 -11.14769 -10.81421 -10.78407 -10.58221 -10.15441 -9.93919 -9.70904 -9.26659 -8.90798 -8.54647 -8.43759 -7.45509 -6.18967 -4.18848 1.36013 1.46010 3.19382 3.27161 3.27706 3.29791 3.64114 3.96779 4.28911 4.46387 4.62914 4.75915 4.95918 5.02296 5.06790 5.12787 5.23595 5.29018 5.35148 5.42672 5.48804 5.63733 5.73520 5.76231 5.82546 5.89454 5.93484 5.93964 6.00459 6.08196 6.20694 6.23216 6.29393 6.38028 6.44839 6.53626 6.54106 6.71860 6.90834 7.04428 7.22819 7.51119 7.60743 7.88325 8.55289 8.90585 9.40061 10.93701 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.004308 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.341354 B = 6497.351340 C = 7309.906991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.108 3.892 3 C -0.160 4.160 4 C 0.025 3.975 5 N -0.481 5.481 6 C 0.059 3.941 7 C 0.057 3.943 8 O -0.380 6.380 9 C 0.168 3.832 10 C -0.521 4.521 11 H 0.082 0.918 12 C 0.074 3.926 13 N -0.893 5.893 14 Si 0.875 3.125 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.053 3.947 19 C -0.134 4.134 20 C -0.129 4.129 21 C -0.122 4.122 22 C -0.129 4.129 23 C 0.094 3.906 24 O -0.312 6.312 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.003 0.997 38 H 0.000 1.000 39 H 0.267 0.733 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.264 -0.168 -14.125 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.070 3.930 3 C -0.217 4.217 4 C -0.101 4.101 5 N -0.195 5.195 6 C -0.066 4.066 7 C -0.020 4.020 8 O -0.299 6.299 9 C 0.093 3.907 10 C -0.559 4.559 11 H 0.100 0.900 12 C -0.128 4.128 13 N -0.531 5.531 14 Si 0.701 3.299 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.046 4.046 19 C -0.155 4.155 20 C -0.148 4.148 21 C -0.142 4.142 22 C -0.148 4.148 23 C 0.046 3.954 24 O -0.227 6.227 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.021 0.979 38 H 0.017 0.983 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.887 0.245 -14.092 19.097 hybrid contribution 0.482 -0.023 1.128 1.227 sum 13.369 0.223 -12.964 18.623 Atomic orbital electron populations 1.21754 0.90675 1.03548 1.03444 1.22176 0.95539 0.91976 0.83277 1.22188 1.02344 0.94620 1.02558 1.23214 0.84987 1.00985 1.00876 1.58793 1.07595 1.51789 1.01348 1.22430 0.99679 0.95512 0.89023 1.22388 0.85346 0.99614 0.94687 1.87896 1.18982 1.81199 1.41846 1.20619 0.96028 0.92147 0.81943 1.20849 0.89440 1.38900 1.06683 0.89967 1.24753 0.94742 0.95539 0.97756 1.69866 1.06624 1.46404 1.30236 0.86873 0.80348 0.80530 0.82128 1.19899 1.20778 1.19146 1.19066 0.94657 1.00722 0.90133 1.20912 0.93222 1.02487 0.98888 1.20833 0.99753 1.01866 0.92352 1.20776 0.93364 1.01736 0.98279 1.20425 0.95024 1.03681 0.95684 1.18666 0.83745 0.99950 0.93035 1.86249 1.21730 1.72225 1.42530 0.89345 0.91592 0.91499 0.91527 0.92341 0.90590 0.92726 0.84470 0.88871 0.92785 0.93228 0.93085 0.97923 0.98256 0.92299 0.85451 0.86139 0.85893 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.90 37.16 0.33 -1.57 16 2 C 0.11 1.64 1.14 -90.40 -0.10 1.54 16 3 C -0.16 -2.25 8.48 37.16 0.32 -1.94 16 4 C 0.03 0.42 3.70 -3.69 -0.01 0.41 16 5 N -0.48 -7.43 3.89 -170.82 -0.66 -8.09 16 6 C 0.06 0.85 5.13 -3.82 -0.02 0.83 16 7 C 0.06 0.94 6.13 37.15 0.23 1.17 16 8 O -0.38 -8.05 7.18 -35.23 -0.25 -8.31 16 9 C 0.17 4.01 4.76 36.01 0.17 4.18 16 10 C -0.52 -14.69 9.99 -34.44 -0.34 -15.03 16 11 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 14 Si 0.87 20.77 27.47 -169.99 -4.67 16.11 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 18 C 0.05 0.78 5.19 -83.59 -0.43 0.35 16 19 C -0.13 -1.67 9.06 -39.31 -0.36 -2.03 16 20 C -0.13 -1.41 10.03 -39.64 -0.40 -1.80 16 21 C -0.12 -1.33 10.04 -39.60 -0.40 -1.73 16 22 C -0.13 -1.65 9.94 -39.40 -0.39 -2.04 16 23 C 0.09 1.41 6.07 -39.11 -0.24 1.17 16 24 O -0.31 -4.95 9.80 -20.24 -0.20 -5.14 16 25 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.00 6.76 -51.92 -0.35 0.64 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 32 H 0.14 2.63 5.65 -51.93 -0.29 2.33 16 33 H 0.09 1.08 5.59 -51.93 -0.29 0.79 16 34 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.00 0.07 7.20 -51.93 -0.37 -0.30 16 38 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.13 1.37 5.85 -52.48 -0.31 1.06 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -30.45 339.41 -8.31 -38.76 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.67 Total: 1.98 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -1.75 Total: -14.48 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.11 Total: -34.02 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.45 Total: -13.45 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.45 -8.31 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815062201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.533 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds