Wall clock time and date at job start Tue Mar 31 2020 07:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.81708 * 2 1 4 4 C 1.53427 * 109.77635 * 120.78031 * 2 1 3 5 5 N 1.46749 * 108.60369 * 182.87435 * 4 2 1 6 6 C 1.46905 * 110.99835 * 185.02535 * 5 4 2 7 7 C 1.52994 * 109.47325 * 294.11611 * 6 5 4 8 8 O 1.42896 * 109.47330 * 67.71350 * 7 6 5 9 9 C 1.42902 * 113.99850 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46682 * 180.02562 * 9 8 7 11 11 H 1.07992 * 120.00353 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99864 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00230 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99858 * 359.97438 * 12 10 9 15 15 H 1.48493 * 109.47222 * 90.00335 * 14 12 10 16 16 H 1.48505 * 109.46956 * 210.00324 * 14 12 10 17 17 H 1.48497 * 109.47242 * 330.00204 * 14 12 10 18 18 C 1.39850 * 112.13745 * 309.81513 * 5 4 2 19 19 C 1.39149 * 118.59256 * 199.86808 * 18 5 4 20 20 C 1.38066 * 120.24131 * 180.28350 * 19 18 5 21 21 C 1.38260 * 120.11638 * 359.93276 * 20 19 18 22 22 C 1.38173 * 120.02805 * 359.90448 * 21 20 19 23 23 C 1.38780 * 120.20624 * 0.05476 * 22 21 20 24 24 O 1.36158 * 118.74334 * 180.18639 * 23 22 21 25 25 H 1.09004 * 109.46931 * 299.22216 * 1 2 3 26 26 H 1.08999 * 109.47201 * 59.21742 * 1 2 3 27 27 H 1.08995 * 109.47741 * 179.22003 * 1 2 3 28 28 H 1.09008 * 109.46884 * 180.78073 * 3 2 1 29 29 H 1.08996 * 109.46839 * 300.77666 * 3 2 1 30 30 H 1.08999 * 109.47330 * 60.77982 * 3 2 1 31 31 H 1.09003 * 109.61269 * 63.13745 * 4 2 1 32 32 H 1.08998 * 109.61426 * 302.60942 * 4 2 1 33 33 H 1.09001 * 109.46646 * 174.11225 * 6 5 4 34 34 H 1.09003 * 109.46666 * 54.11669 * 6 5 4 35 35 H 1.09008 * 109.46987 * 187.71628 * 7 6 5 36 36 H 1.09000 * 109.47059 * 307.71236 * 7 6 5 37 37 H 1.08997 * 109.47408 * 299.99673 * 9 8 7 38 38 H 1.09001 * 109.47017 * 60.00415 * 9 8 7 39 39 H 0.97001 * 120.00379 * 179.97438 * 13 12 10 40 40 H 1.08003 * 119.87702 * 0.21317 * 19 18 5 41 41 H 1.07997 * 119.94144 * 179.97438 * 20 19 18 42 42 H 1.07994 * 119.98477 * 179.97438 * 21 20 19 43 43 H 1.07998 * 119.89615 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0487 1.4394 0.0000 4 6 2.0491 -0.7389 1.2404 5 7 3.5146 -0.6639 1.2508 6 6 4.0745 -1.4567 2.3536 7 6 3.6652 -0.8330 3.6893 8 8 2.2552 -0.9781 3.8706 9 6 1.7668 -0.4263 5.0949 10 6 0.2768 -0.6351 5.1809 11 1 -0.2450 -1.1385 4.3806 12 6 -0.4204 -0.1826 6.2810 13 7 -1.7206 -0.3653 6.3564 14 14 0.4821 0.6887 7.6652 15 1 0.5127 2.1484 7.3944 16 1 -0.2206 0.4381 8.9492 17 1 1.8717 0.1723 7.7523 18 6 4.0706 -1.0463 0.0259 19 6 5.4075 -1.4306 -0.0076 20 6 5.9926 -1.8090 -1.1995 21 6 5.2516 -1.8093 -2.3668 22 6 3.9225 -1.4324 -2.3421 23 6 3.3268 -1.0515 -1.1479 24 8 2.0143 -0.6895 -1.1572 25 1 -0.3633 0.5017 0.8969 26 1 -0.3633 0.5259 -0.8829 27 1 -0.3634 -1.0275 -0.0140 28 1 3.1386 1.4328 -0.0140 29 1 1.6771 1.9594 -0.8829 30 1 1.6999 1.9513 0.8969 31 1 1.7363 -1.7823 1.2023 32 1 1.6522 -0.2678 2.1397 33 1 5.1617 -1.4694 2.2764 34 1 3.6943 -2.4767 2.2972 35 1 4.1897 -1.3366 4.5014 36 1 3.9246 0.2257 3.6905 37 1 2.2519 -0.9218 5.9359 38 1 1.9869 0.6409 5.1258 39 1 -2.2110 -0.0473 7.1305 40 1 5.9900 -1.4318 0.9019 41 1 7.0308 -2.1060 -1.2200 42 1 5.7115 -2.1053 -3.2980 43 1 3.3455 -1.4338 -3.2551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815062201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:52 Heat of formation + Delta-G solvation = -63.989187 kcal Electronic energy + Delta-G solvation = -24177.578785 eV Core-core repulsion = 20801.648045 eV Total energy + Delta-G solvation = -3375.930740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.29867 -39.11917 -38.79106 -37.29101 -34.86913 -34.45426 -31.71707 -31.29476 -29.88930 -29.18839 -28.35934 -26.48271 -24.18620 -23.95781 -23.60371 -22.12362 -20.25864 -19.21321 -19.04509 -17.84398 -17.38269 -17.24660 -16.64131 -16.50954 -16.11249 -15.72090 -15.48074 -15.32993 -15.07803 -14.75309 -14.61875 -14.24852 -13.91785 -13.55526 -13.37120 -13.26631 -13.15225 -13.06549 -12.93322 -12.73953 -12.64195 -12.49031 -12.24730 -12.14286 -11.84472 -11.75097 -11.45198 -11.25702 -10.92702 -10.80964 -10.28687 -9.43062 -8.55582 -8.36618 -6.44013 0.39788 0.48705 1.33644 1.35575 1.46055 2.19736 2.28912 2.56232 2.90858 2.96577 3.05406 3.45851 3.66255 3.80894 3.86145 4.09804 4.16882 4.21012 4.28854 4.33592 4.42427 4.47563 4.55665 4.59548 4.63280 4.66143 4.75986 4.77139 4.81796 4.83768 4.91327 4.99467 5.07672 5.13424 5.20246 5.22602 5.36549 5.44938 5.62701 5.79050 5.90097 5.92583 6.11380 6.51348 6.59371 6.71478 7.20324 8.80014 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.004308 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.341354 B = 6497.351340 C = 7309.906991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.107 3.893 3 C -0.150 4.150 4 C 0.035 3.965 5 N -0.483 5.483 6 C 0.062 3.938 7 C 0.051 3.949 8 O -0.399 6.399 9 C 0.179 3.821 10 C -0.539 4.539 11 H 0.033 0.967 12 C 0.016 3.984 13 N -0.941 5.941 14 Si 0.950 3.050 15 H -0.261 1.261 16 H -0.277 1.277 17 H -0.246 1.246 18 C 0.027 3.973 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.138 4.138 23 C 0.061 3.939 24 O -0.325 6.325 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.272 0.728 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.818 0.407 -14.471 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.069 3.931 3 C -0.207 4.207 4 C -0.092 4.092 5 N -0.198 5.198 6 C -0.063 4.063 7 C -0.026 4.026 8 O -0.319 6.319 9 C 0.103 3.897 10 C -0.577 4.577 11 H 0.051 0.949 12 C -0.182 4.182 13 N -0.581 5.581 14 Si 0.772 3.228 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.169 1.169 18 C -0.071 4.071 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.133 4.133 22 C -0.157 4.157 23 C 0.015 3.985 24 O -0.240 6.240 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.128 0.872 33 H 0.147 0.853 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.081 0.919 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.471 0.807 -14.471 21.940 hybrid contribution -0.573 -0.317 1.056 1.243 sum 15.899 0.490 -13.415 20.808 Atomic orbital electron populations 1.21733 0.90396 1.03155 1.03902 1.22174 0.95855 0.92399 0.82632 1.22086 1.01720 0.93865 1.03030 1.22920 0.86611 0.99123 1.00518 1.58855 1.06291 1.52353 1.02291 1.22505 1.01541 0.94365 0.87845 1.22682 0.82735 1.00618 0.96533 1.87902 1.22237 1.81148 1.40563 1.20306 0.93218 0.92805 0.83333 1.21112 0.92101 1.38778 1.05733 0.94879 1.25764 0.95537 0.96163 1.00766 1.70025 1.08714 1.47797 1.31518 0.85680 0.79743 0.79506 0.77861 1.18552 1.20179 1.16904 1.19264 0.95820 1.02503 0.89482 1.21209 0.92252 1.01763 1.00498 1.21276 1.01266 1.00139 0.91505 1.21219 0.92401 0.99828 0.99838 1.20730 0.96168 1.03504 0.95306 1.19073 0.83566 1.01624 0.94280 1.86207 1.22804 1.72708 1.42313 0.90270 0.89587 0.92408 0.92275 0.90886 0.90940 0.95526 0.87248 0.85260 0.94162 0.91202 0.92391 0.97119 0.97197 0.91912 0.83674 0.82724 0.82580 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 8.90 71.98 0.64 -3.35 16 2 C 0.11 3.40 1.14 -10.65 -0.01 3.39 16 3 C -0.15 -4.28 8.48 71.98 0.61 -3.67 16 4 C 0.04 1.25 3.70 86.48 0.32 1.57 16 5 N -0.48 -14.97 3.89 -694.35 -2.70 -17.66 16 6 C 0.06 1.74 5.13 86.30 0.44 2.19 16 7 C 0.05 1.63 6.13 71.98 0.44 2.07 16 8 O -0.40 -17.31 7.18 -148.98 -1.07 -18.38 16 9 C 0.18 8.58 4.76 71.24 0.34 8.91 16 10 C -0.54 -31.67 9.99 25.60 0.26 -31.41 16 11 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 12 C 0.02 0.92 5.47 84.65 0.46 1.38 16 13 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 14 Si 0.95 42.46 27.47 68.60 1.88 44.34 16 15 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.25 -10.07 6.54 99.48 0.65 -9.42 16 18 C 0.03 0.78 5.19 38.25 0.20 0.98 16 19 C -0.14 -3.03 9.06 22.45 0.20 -2.83 16 20 C -0.12 -2.20 10.03 22.23 0.22 -1.97 16 21 C -0.11 -2.09 10.04 22.26 0.22 -1.86 16 22 C -0.14 -3.30 9.94 22.38 0.22 -3.07 16 23 C 0.06 1.83 6.07 22.57 0.14 1.97 16 24 O -0.32 -10.54 9.80 -95.35 -0.93 -11.48 16 25 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.77 6.76 -2.38 -0.02 1.75 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.03 1.06 8.09 -2.39 -0.02 1.04 16 32 H 0.11 4.52 5.65 -2.39 -0.01 4.51 16 33 H 0.13 2.62 5.59 -2.39 -0.01 2.61 16 34 H 0.04 1.23 8.08 -2.39 -0.02 1.21 16 35 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 38 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.15 2.58 5.85 -2.91 -0.02 2.56 16 41 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 43 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -69.28 339.41 3.12 -66.16 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.93 Total: 20.58 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 4.71 Total: -25.70 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -2.40 Total: -75.52 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -2.00 Total: -29.86 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -69.28 3.12 -66.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815062201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.172 kcal (2) G-P(sol) polarization free energy of solvation -69.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds