Wall clock time and date at job start Tue Mar 31 2020 07:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31681 * 119.71862 * 2 1 4 4 C 1.31935 * 121.88250 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.45488 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47059 * 265.00039 * 5 4 3 7 7 C 1.52994 * 109.47180 * 144.99710 * 5 4 3 8 8 C 1.38358 * 121.09171 * 0.27093 * 4 3 2 9 9 C 1.38346 * 119.31074 * 359.43724 * 8 4 3 10 10 C 1.39574 * 119.71663 * 179.97438 * 2 1 3 11 11 C 1.47714 * 120.56998 * 0.02562 * 10 2 1 12 12 O 1.21473 * 119.99653 * 6.19225 * 11 10 2 13 13 O 1.34709 * 120.00540 * 186.19365 * 11 10 2 14 14 C 1.45195 * 117.00669 * 179.97438 * 13 11 10 15 15 C 1.52989 * 109.47675 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47567 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47291 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00168 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99730 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99671 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00205 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46814 * 90.00571 * 21 19 17 23 23 H 1.48495 * 109.47178 * 210.00291 * 21 19 17 24 24 H 1.48495 * 109.47312 * 330.00788 * 21 19 17 25 25 H 1.08997 * 109.46936 * 96.56257 * 1 2 3 26 26 H 1.09000 * 109.47037 * 216.55733 * 1 2 3 27 27 H 1.08996 * 109.46943 * 336.56293 * 1 2 3 28 28 H 1.09006 * 109.46741 * 25.00031 * 5 4 3 29 29 H 1.09005 * 109.47041 * 179.97438 * 6 5 4 30 30 H 1.08996 * 109.47430 * 299.99626 * 6 5 4 31 31 H 1.08998 * 109.47207 * 59.99943 * 6 5 4 32 32 H 1.08998 * 109.47500 * 180.02562 * 7 5 4 33 33 H 1.09005 * 109.47476 * 300.00229 * 7 5 4 34 34 H 1.09004 * 109.47334 * 60.00055 * 7 5 4 35 35 H 1.07999 * 120.34805 * 179.72790 * 8 4 3 36 36 H 1.07995 * 120.86052 * 180.28206 * 9 8 4 37 37 H 1.09000 * 109.47417 * 300.00708 * 14 13 11 38 38 H 1.09007 * 109.46625 * 60.00127 * 14 13 11 39 39 H 1.09000 * 109.47333 * 300.00830 * 15 14 13 40 40 H 1.09007 * 109.46934 * 60.00385 * 15 14 13 41 41 H 1.09000 * 109.47525 * 300.00777 * 16 15 14 42 42 H 1.09007 * 109.46626 * 60.00262 * 16 15 14 43 43 H 0.97001 * 119.99685 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1598 1.1436 0.0000 4 6 3.4783 1.1934 -0.0005 5 6 4.1693 2.5327 -0.0011 6 6 4.5143 2.9280 -1.4382 7 6 5.4534 2.4444 0.8259 8 6 4.2370 0.0364 -0.0067 9 6 3.5996 -1.1915 -0.0005 10 6 2.1989 -1.2122 0.0005 11 6 1.4668 -2.4951 0.0005 12 8 0.2574 -2.5042 -0.1134 13 8 2.1401 -3.6550 0.1269 14 6 1.3557 -4.8768 0.1193 15 6 2.2865 -6.0814 0.2717 16 6 1.4599 -7.3689 0.2643 17 6 2.3767 -8.5554 0.4151 18 1 3.4425 -8.4061 0.5066 19 6 1.8551 -9.8315 0.4351 20 7 2.6551 -10.8669 0.5672 21 14 0.0119 -10.0897 0.2761 22 1 -0.3459 -10.2335 -1.1580 23 1 -0.3808 -11.3195 1.0099 24 1 -0.7029 -8.9214 0.8498 25 1 -0.3633 -0.1174 -1.0209 26 1 -0.3633 -0.8255 0.6121 27 1 -0.3633 0.9429 0.4087 28 1 3.5082 3.2827 0.4334 29 1 5.0136 3.8969 -1.4387 30 1 5.1752 2.1780 -1.8726 31 1 3.5994 2.9909 -2.0273 32 1 5.9530 3.4131 0.8259 33 1 5.2076 2.1628 1.8499 34 1 6.1144 1.6943 0.3916 35 1 5.3156 0.0912 -0.0114 36 1 4.1672 -2.1102 -0.0005 37 1 0.6463 -4.8584 0.9466 38 1 0.8132 -4.9543 -0.8230 39 1 2.9957 -6.0997 -0.5558 40 1 2.8294 -6.0042 1.2138 41 1 0.7510 -7.3504 1.0921 42 1 0.9167 -7.4464 -0.6776 43 1 2.2881 -11.7647 0.5817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815348732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:33 Heat of formation + Delta-G solvation = -76.784721 kcal Electronic energy + Delta-G solvation = -22276.199384 eV Core-core repulsion = 18899.713788 eV Total energy + Delta-G solvation = -3376.485596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17551 -39.85263 -36.84856 -35.95529 -34.16794 -33.22928 -31.94312 -31.70480 -28.43328 -27.63004 -27.25420 -25.20543 -23.24748 -22.67315 -21.56413 -20.50732 -20.19067 -17.91312 -17.34124 -16.80832 -16.50097 -16.21338 -16.01338 -15.07285 -14.66769 -14.49751 -14.22402 -14.07054 -13.62859 -13.51267 -13.26892 -13.11311 -12.75950 -12.61579 -12.44083 -12.36713 -12.17397 -11.94657 -11.67365 -11.57957 -11.36983 -11.08821 -10.99927 -10.51895 -10.38564 -10.14765 -10.08219 -9.89841 -9.78465 -9.66463 -9.27600 -9.18992 -8.58939 -6.09246 -4.08422 0.28214 0.91697 2.43404 2.67638 3.28274 3.36062 3.39241 3.44161 3.69957 4.22306 4.40744 4.40985 4.50248 4.62943 4.66812 4.79087 4.84459 5.15263 5.22357 5.23994 5.25149 5.37051 5.41780 5.42412 5.44185 5.48401 5.54838 5.57207 5.70486 5.77483 5.81049 5.82346 5.91303 6.00234 6.22359 6.34918 6.38574 6.62309 6.76107 7.17694 7.29283 7.60258 7.69128 7.78674 8.47188 8.94811 9.52184 11.03879 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030298 B = 0.002600 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.934833 B =10765.585513 C =11509.646664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.198 3.802 3 N -0.491 5.491 4 C 0.169 3.831 5 C -0.050 4.050 6 C -0.142 4.142 7 C -0.149 4.149 8 C -0.193 4.193 9 C -0.011 4.011 10 C -0.185 4.185 11 C 0.509 3.491 12 O -0.501 6.501 13 O -0.352 6.352 14 C 0.067 3.933 15 C -0.102 4.102 16 C -0.010 4.010 17 C -0.522 4.522 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 28.514 -1.541 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.060 3.940 3 N -0.201 5.201 4 C 0.032 3.968 5 C -0.070 4.070 6 C -0.199 4.199 7 C -0.207 4.207 8 C -0.212 4.212 9 C -0.036 4.036 10 C -0.188 4.188 11 C 0.354 3.646 12 O -0.392 6.392 13 O -0.268 6.268 14 C -0.006 4.006 15 C -0.139 4.139 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.092 0.908 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.221 29.023 -1.556 29.149 hybrid contribution -0.512 -1.264 -0.123 1.369 sum 1.708 27.759 -1.679 27.862 Atomic orbital electron populations 1.21097 0.87381 1.04085 1.04376 1.21511 0.97551 0.86213 0.88697 1.67516 1.09312 1.28198 1.15054 1.21540 0.89296 0.95660 0.90351 1.20141 0.96611 0.92528 0.97679 1.21806 1.01968 1.01685 0.94487 1.21946 0.96229 1.02600 0.99889 1.21978 1.02027 0.92193 1.05028 1.22008 0.92999 0.99388 0.89223 1.20036 0.94552 0.92054 1.12167 1.20815 0.85850 0.84581 0.73393 1.90783 1.14843 1.87821 1.45715 1.86530 1.42410 1.15173 1.82700 1.23542 0.94705 0.80056 1.02263 1.21567 0.98222 0.91419 1.02709 1.19520 0.96187 0.92388 0.96691 1.21044 0.95139 0.89222 1.50589 0.90809 1.25022 0.97944 0.96007 0.94469 1.69909 1.35059 0.98578 1.50432 0.86779 0.86091 0.77886 0.78564 1.20195 1.21267 1.18964 0.89639 0.88012 0.90910 0.88932 0.91599 0.92273 0.92189 0.91580 0.92173 0.91873 0.83748 0.82913 0.91328 0.91344 0.91519 0.91490 0.96247 0.96690 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 8.88 36.01 0.32 -0.96 16 2 C 0.20 2.47 6.82 -82.16 -0.56 1.91 16 3 N -0.49 -5.79 10.17 -5.40 -0.05 -5.85 16 4 C 0.17 1.64 5.79 -82.50 -0.48 1.17 16 5 C -0.05 -0.35 3.23 -91.78 -0.30 -0.65 16 6 C -0.14 -0.85 9.17 37.15 0.34 -0.51 16 7 C -0.15 -0.78 8.62 37.15 0.32 -0.46 16 8 C -0.19 -1.73 9.16 -39.50 -0.36 -2.09 16 9 C -0.01 -0.11 9.74 -38.85 -0.38 -0.49 16 10 C -0.18 -2.38 5.89 -104.84 -0.62 -2.99 16 11 C 0.51 7.66 7.83 34.60 0.27 7.93 16 12 O -0.50 -8.24 13.17 -19.25 -0.25 -8.50 16 13 O -0.35 -5.57 9.57 -40.52 -0.39 -5.95 16 14 C 0.07 1.14 5.47 37.15 0.20 1.35 16 15 C -0.10 -1.97 5.53 -26.74 -0.15 -2.12 16 16 C -0.01 -0.24 4.04 -27.89 -0.11 -0.36 16 17 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 21 Si 0.88 21.56 27.47 -169.99 -4.67 16.90 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.10 1.27 5.85 -51.93 -0.30 0.97 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.29 6.48 -51.93 -0.34 -0.05 16 35 H 0.14 0.91 6.30 -52.49 -0.33 0.57 16 36 H 0.15 1.46 7.72 -52.49 -0.41 1.05 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -31.68 355.50 -7.96 -39.64 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -6.80 Total: -3.30 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -1.93 Total: -11.47 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.72 Total: -32.67 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.64 Total: -14.45 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.68 -7.96 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815348732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.141 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds