Wall clock time and date at job start Tue Mar 31 2020 07:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31681 * 119.71862 * 2 1 4 4 C 1.31935 * 121.88250 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.45488 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47059 * 265.00039 * 5 4 3 7 7 C 1.52994 * 109.47180 * 144.99710 * 5 4 3 8 8 C 1.38358 * 121.09171 * 0.27093 * 4 3 2 9 9 C 1.38346 * 119.31074 * 359.43724 * 8 4 3 10 10 C 1.39574 * 119.71663 * 179.97438 * 2 1 3 11 11 C 1.47714 * 120.56998 * 0.02562 * 10 2 1 12 12 O 1.21473 * 119.99653 * 6.19225 * 11 10 2 13 13 O 1.34709 * 120.00540 * 186.19365 * 11 10 2 14 14 C 1.45195 * 117.00669 * 179.97438 * 13 11 10 15 15 C 1.52989 * 109.47675 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47567 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47291 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00168 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99730 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99671 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00205 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46814 * 90.00571 * 21 19 17 23 23 H 1.48495 * 109.47178 * 210.00291 * 21 19 17 24 24 H 1.48495 * 109.47312 * 330.00788 * 21 19 17 25 25 H 1.08997 * 109.46936 * 96.56257 * 1 2 3 26 26 H 1.09000 * 109.47037 * 216.55733 * 1 2 3 27 27 H 1.08996 * 109.46943 * 336.56293 * 1 2 3 28 28 H 1.09006 * 109.46741 * 25.00031 * 5 4 3 29 29 H 1.09005 * 109.47041 * 179.97438 * 6 5 4 30 30 H 1.08996 * 109.47430 * 299.99626 * 6 5 4 31 31 H 1.08998 * 109.47207 * 59.99943 * 6 5 4 32 32 H 1.08998 * 109.47500 * 180.02562 * 7 5 4 33 33 H 1.09005 * 109.47476 * 300.00229 * 7 5 4 34 34 H 1.09004 * 109.47334 * 60.00055 * 7 5 4 35 35 H 1.07999 * 120.34805 * 179.72790 * 8 4 3 36 36 H 1.07995 * 120.86052 * 180.28206 * 9 8 4 37 37 H 1.09000 * 109.47417 * 300.00708 * 14 13 11 38 38 H 1.09007 * 109.46625 * 60.00127 * 14 13 11 39 39 H 1.09000 * 109.47333 * 300.00830 * 15 14 13 40 40 H 1.09007 * 109.46934 * 60.00385 * 15 14 13 41 41 H 1.09000 * 109.47525 * 300.00777 * 16 15 14 42 42 H 1.09007 * 109.46626 * 60.00262 * 16 15 14 43 43 H 0.97001 * 119.99685 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1598 1.1436 0.0000 4 6 3.4783 1.1934 -0.0005 5 6 4.1693 2.5327 -0.0011 6 6 4.5143 2.9280 -1.4382 7 6 5.4534 2.4444 0.8259 8 6 4.2370 0.0364 -0.0067 9 6 3.5996 -1.1915 -0.0005 10 6 2.1989 -1.2122 0.0005 11 6 1.4668 -2.4951 0.0005 12 8 0.2574 -2.5042 -0.1134 13 8 2.1401 -3.6550 0.1269 14 6 1.3557 -4.8768 0.1193 15 6 2.2865 -6.0814 0.2717 16 6 1.4599 -7.3689 0.2643 17 6 2.3767 -8.5554 0.4151 18 1 3.4425 -8.4061 0.5066 19 6 1.8551 -9.8315 0.4351 20 7 2.6551 -10.8669 0.5672 21 14 0.0119 -10.0897 0.2761 22 1 -0.3459 -10.2335 -1.1580 23 1 -0.3808 -11.3195 1.0099 24 1 -0.7029 -8.9214 0.8498 25 1 -0.3633 -0.1174 -1.0209 26 1 -0.3633 -0.8255 0.6121 27 1 -0.3633 0.9429 0.4087 28 1 3.5082 3.2827 0.4334 29 1 5.0136 3.8969 -1.4387 30 1 5.1752 2.1780 -1.8726 31 1 3.5994 2.9909 -2.0273 32 1 5.9530 3.4131 0.8259 33 1 5.2076 2.1628 1.8499 34 1 6.1144 1.6943 0.3916 35 1 5.3156 0.0912 -0.0114 36 1 4.1672 -2.1102 -0.0005 37 1 0.6463 -4.8584 0.9466 38 1 0.8132 -4.9543 -0.8230 39 1 2.9957 -6.0997 -0.5558 40 1 2.8294 -6.0042 1.2138 41 1 0.7510 -7.3504 1.0921 42 1 0.9167 -7.4464 -0.6776 43 1 2.2881 -11.7647 0.5817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815348732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:32 Heat of formation + Delta-G solvation = -93.857736 kcal Electronic energy + Delta-G solvation = -22276.939726 eV Core-core repulsion = 18899.713788 eV Total energy + Delta-G solvation = -3377.225937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.12994 -40.91664 -38.02473 -36.68440 -35.96744 -34.22101 -33.74092 -32.60351 -29.73528 -28.76448 -27.91545 -26.13664 -24.81970 -23.50673 -22.67188 -22.07365 -21.11216 -19.06832 -18.95609 -18.15834 -17.76627 -17.30883 -16.76166 -16.29796 -16.06196 -15.52550 -15.35433 -15.02762 -14.81782 -14.62046 -14.24291 -14.12330 -14.05151 -13.84815 -13.67821 -13.26222 -13.19074 -12.86489 -12.82545 -12.60745 -12.29077 -12.09754 -12.07214 -11.94521 -11.88531 -11.77239 -11.43805 -11.36725 -11.32957 -10.99335 -10.77956 -10.60502 -10.01777 -8.30724 -6.35616 -0.61864 0.09703 1.36126 1.36678 1.38219 1.48947 1.50397 2.35252 2.57729 2.95646 3.04513 3.43499 3.54385 3.63719 3.88073 3.99801 4.01401 4.06853 4.14197 4.25400 4.36911 4.45159 4.56889 4.64854 4.65869 4.72855 4.73634 4.81035 4.84943 4.93755 4.94556 4.99088 5.02381 5.09463 5.21282 5.30049 5.36889 5.42839 5.46376 5.48238 5.56001 5.62017 6.25093 6.58084 6.72357 6.77284 7.28848 8.85749 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030298 B = 0.002600 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.934833 B =10765.585513 C =11509.646664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.188 3.812 3 N -0.507 5.507 4 C 0.167 3.833 5 C -0.049 4.049 6 C -0.139 4.139 7 C -0.147 4.147 8 C -0.184 4.184 9 C -0.013 4.013 10 C -0.205 4.205 11 C 0.509 3.491 12 O -0.520 6.520 13 O -0.353 6.353 14 C 0.076 3.924 15 C -0.092 4.092 16 C -0.010 4.010 17 C -0.533 4.533 18 H 0.036 0.964 19 C 0.004 3.996 20 N -0.949 5.949 21 Si 0.949 3.051 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.246 1.246 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.177 0.823 36 H 0.163 0.837 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.025 0.975 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 30.530 -1.803 30.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.050 3.950 3 N -0.217 5.217 4 C 0.029 3.971 5 C -0.068 4.068 6 C -0.197 4.197 7 C -0.204 4.204 8 C -0.203 4.203 9 C -0.038 4.038 10 C -0.209 4.209 11 C 0.355 3.645 12 O -0.411 6.411 13 O -0.270 6.270 14 C 0.003 3.997 15 C -0.129 4.129 16 C -0.047 4.047 17 C -0.571 4.571 18 H 0.054 0.946 19 C -0.193 4.193 20 N -0.590 5.590 21 Si 0.773 3.227 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.169 1.169 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.194 0.806 36 H 0.181 0.819 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.086 31.068 -1.819 31.191 hybrid contribution -0.315 -1.786 -0.035 1.814 sum 1.771 29.281 -1.853 29.393 Atomic orbital electron populations 1.21024 0.87195 1.04099 1.04141 1.21639 0.97996 0.86407 0.88988 1.67573 1.10526 1.27788 1.15796 1.22141 0.88843 0.97349 0.88763 1.20246 0.97156 0.90781 0.98659 1.21800 1.01542 1.02876 0.93446 1.21950 0.95368 1.03912 0.99171 1.22304 1.03529 0.91086 1.03384 1.22209 0.92189 1.00638 0.88769 1.19998 0.95513 0.90897 1.14450 1.21195 0.85823 0.84756 0.72688 1.90773 1.15624 1.87968 1.46730 1.86506 1.42276 1.15151 1.83021 1.23242 0.93900 0.79837 1.02742 1.21319 0.98014 0.91071 1.02544 1.19451 0.95819 0.92228 0.97202 1.21397 0.94363 0.91335 1.50014 0.94580 1.26009 1.03477 0.95641 0.94138 1.70061 1.37596 0.99257 1.52067 0.85668 0.79508 0.78436 0.79129 1.19090 1.20961 1.16898 0.89644 0.89355 0.89744 0.89365 0.89765 0.91760 0.93626 0.90032 0.92723 0.90824 0.80615 0.81935 0.90905 0.90830 0.91716 0.91802 0.95607 0.95696 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 8.88 71.24 0.63 -1.80 16 2 C 0.19 4.59 6.82 42.91 0.29 4.88 16 3 N -0.51 -11.47 10.17 -171.01 -1.74 -13.20 16 4 C 0.17 2.93 5.79 42.57 0.25 3.18 16 5 C -0.05 -0.57 3.23 -11.54 -0.04 -0.61 16 6 C -0.14 -1.34 9.17 71.98 0.66 -0.68 16 7 C -0.15 -1.08 8.62 71.98 0.62 -0.46 16 8 C -0.18 -2.86 9.16 22.32 0.20 -2.65 16 9 C -0.01 -0.25 9.74 22.74 0.22 -0.03 16 10 C -0.21 -5.14 5.89 -20.00 -0.12 -5.26 16 11 C 0.51 15.09 7.83 70.33 0.55 15.64 16 12 O -0.52 -16.95 13.17 19.92 0.26 -16.69 16 13 O -0.35 -10.86 9.57 -56.18 -0.54 -11.40 16 14 C 0.08 2.49 5.47 71.98 0.39 2.89 16 15 C -0.09 -3.51 5.53 30.59 0.17 -3.34 16 16 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 17 C -0.53 -30.47 9.66 25.60 0.25 -30.23 16 18 H 0.04 2.26 7.99 -2.91 -0.02 2.23 16 19 C 0.00 0.25 5.47 84.66 0.46 0.72 16 20 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 21 Si 0.95 43.90 27.47 68.60 1.88 45.79 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.09 2.24 5.85 -2.39 -0.01 2.22 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.07 0.40 6.48 -2.38 -0.02 0.38 16 35 H 0.18 1.56 6.30 -2.91 -0.02 1.54 16 36 H 0.16 2.83 7.72 -2.91 -0.02 2.81 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 41 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 42 H 0.02 1.09 7.57 -2.38 -0.02 1.07 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -68.87 355.50 5.77 -63.10 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.93 Total: 9.54 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 4.67 Total: -18.08 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.44 Total: -72.25 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.28 Total: -28.09 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.79 kcal Total: -68.87 5.77 -63.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815348732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.761 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds