Wall clock time and date at job start Tue Mar 31 2020 07:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46856 * 2 1 4 4 C 1.50707 * 109.47350 * 240.00524 * 2 1 3 5 5 H 1.07997 * 119.99471 * 240.00249 * 4 2 1 6 6 C 1.37876 * 119.99889 * 59.99419 * 4 2 1 7 7 N 1.31507 * 120.00179 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99675 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47199 * 60.00142 * 8 6 4 10 10 H 1.48491 * 109.47439 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47455 * 300.00594 * 8 6 4 12 12 C 1.52994 * 109.47428 * 119.99957 * 2 1 3 13 13 N 1.46499 * 109.47208 * 300.00297 * 12 2 1 14 14 C 1.34774 * 120.00356 * 179.97438 * 13 12 2 15 15 O 1.21287 * 119.99726 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00286 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47073 * 274.74929 * 16 14 13 18 18 O 1.42894 * 109.47188 * 34.75264 * 16 14 13 19 19 C 1.50705 * 109.47098 * 154.75365 * 16 14 13 20 20 C 1.38234 * 119.99884 * 247.53990 * 19 16 14 21 21 C 1.38234 * 119.99918 * 180.02562 * 20 19 16 22 22 C 1.38239 * 120.00082 * 359.94914 * 21 20 19 23 23 C 1.38232 * 119.99876 * 0.28503 * 22 21 20 24 24 C 1.38236 * 120.00077 * 67.56623 * 19 16 14 25 25 H 1.08998 * 109.47650 * 299.99772 * 1 2 3 26 26 H 1.09004 * 109.47100 * 60.00235 * 1 2 3 27 27 H 1.09001 * 109.46906 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47130 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47074 * 299.99781 * 3 2 1 30 30 H 1.09002 * 109.47166 * 60.00046 * 3 2 1 31 31 H 0.97006 * 120.00097 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.47201 * 180.02562 * 12 2 1 33 33 H 1.09006 * 109.47144 * 60.00229 * 12 2 1 34 34 H 0.97000 * 119.99646 * 359.97438 * 13 12 2 35 35 H 1.08992 * 109.47541 * 300.00413 * 17 16 14 36 36 H 1.09000 * 109.46552 * 60.00197 * 17 16 14 37 37 H 1.09002 * 109.47195 * 179.97438 * 17 16 14 38 38 H 0.96698 * 114.00028 * 59.99902 * 18 16 14 39 39 H 1.07998 * 120.00251 * 0.02562 * 20 19 16 40 40 H 1.08002 * 119.99928 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.99941 * 180.02562 * 22 21 20 42 42 H 1.07995 * 120.00002 * 179.72241 * 23 22 21 43 43 H 1.08004 * 120.00007 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5201 -4.0079 10 1 1.8270 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5742 -1.4774 3.7807 16 6 1.3740 0.2186 4.8999 17 6 2.3213 1.3687 5.2480 18 8 0.0665 0.7377 4.6495 19 6 1.3173 -0.7515 6.0518 20 6 0.0962 -1.1270 6.5797 21 6 0.0442 -2.0164 7.6366 22 6 1.2133 -2.5313 8.1649 23 6 2.4346 -2.1521 7.6401 24 6 2.4865 -1.2655 6.5808 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 0.7094 1.1619 -3.4844 32 1 3.1301 -0.7208 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.9943 0.7582 2.3563 35 1 3.3186 0.9728 5.4390 36 1 2.3623 2.0703 4.4149 37 1 1.9573 1.8825 6.1377 38 1 -0.5877 0.0628 4.4221 39 1 -0.8172 -0.7254 6.1664 40 1 -0.9099 -2.3095 8.0493 41 1 1.1726 -3.2265 8.9903 42 1 3.3481 -2.5508 8.0558 43 1 3.4406 -0.9721 6.1683 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817612634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:22 Heat of formation + Delta-G solvation = -68.191162 kcal Electronic energy + Delta-G solvation = -23778.819353 eV Core-core repulsion = 20402.706402 eV Total energy + Delta-G solvation = -3376.112951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54559 -38.66011 -36.85139 -36.29135 -33.27902 -32.38967 -30.90253 -30.84483 -29.37504 -25.91342 -25.73425 -25.19784 -24.04784 -22.53576 -21.72175 -19.88171 -18.82964 -18.37794 -17.32565 -15.91325 -15.78560 -15.51348 -15.12164 -14.76279 -14.66956 -14.44878 -13.72357 -13.61176 -13.44308 -13.00170 -12.79272 -12.60659 -12.52825 -12.25845 -12.19023 -12.02656 -11.58852 -11.38679 -11.18987 -11.08829 -10.86649 -10.74681 -10.72812 -10.39466 -10.20875 -9.64775 -9.50511 -9.21945 -8.92276 -8.83277 -8.72958 -8.48090 -8.33722 -6.02976 -4.13470 1.24519 1.38020 2.86560 3.29197 3.33683 3.36365 3.47577 3.86001 4.00591 4.38903 4.47962 4.78421 4.92549 5.01795 5.03563 5.14600 5.23601 5.41985 5.47064 5.62545 5.68518 5.87424 5.97238 5.99762 6.19619 6.29072 6.38318 6.45572 6.49214 6.50600 6.74023 6.82806 6.90533 6.92669 6.99786 6.99987 7.28677 7.34996 7.54646 7.68138 7.99823 8.01811 8.13568 8.36835 8.61213 8.86870 9.52404 10.98305 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030281 B = 0.003538 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.462195 B = 7912.179507 C = 8140.317015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.130 3.870 13 N -0.704 5.704 14 C 0.481 3.519 15 O -0.540 6.540 16 C 0.159 3.841 17 C -0.133 4.133 18 O -0.544 6.544 19 C -0.100 4.100 20 C -0.110 4.110 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.077 4.077 25 H 0.007 0.993 26 H 0.086 0.914 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.007 0.993 31 H 0.261 0.739 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.404 0.596 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.382 0.618 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 -0.291 18.226 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.008 3.992 13 N -0.356 5.356 14 C 0.264 3.736 15 O -0.418 6.418 16 C 0.115 3.885 17 C -0.190 4.190 18 O -0.351 6.351 19 C -0.101 4.101 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.095 4.095 25 H 0.026 0.974 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.231 0.769 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.859 -0.311 18.241 18.264 hybrid contribution -0.217 -0.728 -1.081 1.321 sum -1.076 -1.038 17.160 17.225 Atomic orbital electron populations 1.21829 0.97717 0.99110 1.00210 1.18347 0.92840 0.92766 0.90443 1.21834 0.98534 0.98331 1.00188 1.20945 1.31624 1.12146 0.89923 0.92533 1.24872 0.94834 0.94913 0.98830 1.69792 1.36565 1.22673 1.23355 0.86632 0.79238 0.79792 0.82186 1.20284 1.21309 1.20284 1.21769 0.98181 0.95798 0.83470 1.46316 1.51914 1.31685 1.05639 1.21032 0.82008 0.85066 0.85491 1.90692 1.38421 1.25950 1.86693 1.20220 0.84844 0.93135 0.90281 1.21754 0.97592 0.96401 1.03288 1.86570 1.18637 1.38131 1.91717 1.20026 0.94241 0.98714 0.97152 1.20916 0.97184 0.97662 0.96994 1.21051 0.98307 0.97818 0.97100 1.21155 0.92721 0.99843 1.00043 1.21131 0.97884 0.98249 0.96972 1.20955 0.97991 0.95893 0.94710 0.97357 0.89572 0.95520 0.95483 0.89557 0.97401 0.92923 0.92673 0.92718 0.75989 0.90355 0.90740 0.90635 0.76925 0.85761 0.86082 0.86253 0.86035 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.51 -13.27 8.01 -34.44 -0.28 -13.55 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.53 9.35 55.43 0.52 -23.02 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.13 2.75 4.50 -4.05 -0.02 2.73 16 13 N -0.70 -12.49 4.87 -60.29 -0.29 -12.78 16 14 C 0.48 8.21 6.68 -10.99 -0.07 8.14 16 15 O -0.54 -10.93 15.20 5.55 0.08 -10.84 16 16 C 0.16 2.15 1.16 -92.92 -0.11 2.05 16 17 C -0.13 -1.58 8.55 37.16 0.32 -1.26 16 18 O -0.54 -6.66 11.50 -35.23 -0.41 -7.06 16 19 C -0.10 -1.33 4.56 -104.62 -0.48 -1.81 16 20 C -0.11 -1.28 9.24 -39.58 -0.37 -1.65 16 21 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 22 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.08 -1.01 8.01 -39.58 -0.32 -1.33 16 25 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 26 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 30 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.40 6.73 5.59 -40.82 -0.23 6.50 16 35 H 0.08 0.88 7.01 -51.93 -0.36 0.52 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.38 3.81 7.75 45.56 0.35 4.16 16 39 H 0.12 1.21 6.43 -52.49 -0.34 0.87 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.12 1.63 6.97 -52.48 -0.37 1.26 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -29.15 343.12 -7.66 -36.81 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.63 Total: 10.31 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -2.08 Total: -14.25 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.22 Total: -35.80 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.32 Total: -17.91 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.15 -7.66 -36.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817612634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.380 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds