Wall clock time and date at job start Tue Mar 31 2020 07:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46856 * 2 1 4 4 C 1.50707 * 109.47350 * 240.00524 * 2 1 3 5 5 H 1.07997 * 119.99471 * 240.00249 * 4 2 1 6 6 C 1.37876 * 119.99889 * 59.99419 * 4 2 1 7 7 N 1.31507 * 120.00179 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99675 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47199 * 60.00142 * 8 6 4 10 10 H 1.48491 * 109.47439 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47455 * 300.00594 * 8 6 4 12 12 C 1.52994 * 109.47428 * 119.99957 * 2 1 3 13 13 N 1.46499 * 109.47208 * 300.00297 * 12 2 1 14 14 C 1.34774 * 120.00356 * 179.97438 * 13 12 2 15 15 O 1.21287 * 119.99726 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00286 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47073 * 274.74929 * 16 14 13 18 18 O 1.42894 * 109.47188 * 34.75264 * 16 14 13 19 19 C 1.50705 * 109.47098 * 154.75365 * 16 14 13 20 20 C 1.38234 * 119.99884 * 247.53990 * 19 16 14 21 21 C 1.38234 * 119.99918 * 180.02562 * 20 19 16 22 22 C 1.38239 * 120.00082 * 359.94914 * 21 20 19 23 23 C 1.38232 * 119.99876 * 0.28503 * 22 21 20 24 24 C 1.38236 * 120.00077 * 67.56623 * 19 16 14 25 25 H 1.08998 * 109.47650 * 299.99772 * 1 2 3 26 26 H 1.09004 * 109.47100 * 60.00235 * 1 2 3 27 27 H 1.09001 * 109.46906 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47130 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47074 * 299.99781 * 3 2 1 30 30 H 1.09002 * 109.47166 * 60.00046 * 3 2 1 31 31 H 0.97006 * 120.00097 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.47201 * 180.02562 * 12 2 1 33 33 H 1.09006 * 109.47144 * 60.00229 * 12 2 1 34 34 H 0.97000 * 119.99646 * 359.97438 * 13 12 2 35 35 H 1.08992 * 109.47541 * 300.00413 * 17 16 14 36 36 H 1.09000 * 109.46552 * 60.00197 * 17 16 14 37 37 H 1.09002 * 109.47195 * 179.97438 * 17 16 14 38 38 H 0.96698 * 114.00028 * 59.99902 * 18 16 14 39 39 H 1.07998 * 120.00251 * 0.02562 * 20 19 16 40 40 H 1.08002 * 119.99928 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.99941 * 180.02562 * 22 21 20 42 42 H 1.07995 * 120.00002 * 179.72241 * 23 22 21 43 43 H 1.08004 * 120.00007 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5201 -4.0079 10 1 1.8270 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5742 -1.4774 3.7807 16 6 1.3740 0.2186 4.8999 17 6 2.3213 1.3687 5.2480 18 8 0.0665 0.7377 4.6495 19 6 1.3173 -0.7515 6.0518 20 6 0.0962 -1.1270 6.5797 21 6 0.0442 -2.0164 7.6366 22 6 1.2133 -2.5313 8.1649 23 6 2.4346 -2.1521 7.6401 24 6 2.4865 -1.2655 6.5808 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 0.7094 1.1619 -3.4844 32 1 3.1301 -0.7208 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.9943 0.7582 2.3563 35 1 3.3186 0.9728 5.4390 36 1 2.3623 2.0703 4.4149 37 1 1.9573 1.8825 6.1377 38 1 -0.5877 0.0628 4.4221 39 1 -0.8172 -0.7254 6.1664 40 1 -0.9099 -2.3095 8.0493 41 1 1.1726 -3.2265 8.9903 42 1 3.3481 -2.5508 8.0558 43 1 3.4406 -0.9721 6.1683 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817612634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:22 Heat of formation + Delta-G solvation = -86.236905 kcal Electronic energy + Delta-G solvation = -23779.601875 eV Core-core repulsion = 20402.706402 eV Total energy + Delta-G solvation = -3376.895473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70535 -39.81049 -38.19981 -37.71881 -34.98454 -33.35954 -32.69763 -31.71673 -30.31309 -27.59606 -27.57425 -27.02773 -25.21370 -23.40045 -22.86034 -21.09431 -20.60832 -19.53228 -18.42422 -17.79317 -16.88798 -16.70583 -16.64498 -16.34536 -15.83055 -15.50941 -15.07279 -14.84279 -14.79811 -14.39764 -14.07244 -14.00596 -13.74470 -13.41397 -13.30603 -13.18560 -13.09910 -12.99100 -12.67986 -12.63569 -12.48891 -12.26308 -12.13674 -11.91583 -11.71990 -11.49471 -11.27939 -10.75031 -10.54286 -10.40498 -9.98492 -9.79135 -9.68116 -8.02757 -6.19022 0.36517 0.52282 1.43672 1.44924 1.50901 1.51475 2.18955 2.47067 2.90769 3.03919 3.20710 3.50345 3.73357 3.89926 4.13493 4.21994 4.29194 4.40634 4.48467 4.59006 4.61137 4.69450 4.72255 4.81005 4.96238 5.03607 5.05024 5.08155 5.10129 5.15072 5.17941 5.34143 5.53905 5.56667 5.61773 5.62280 5.66060 5.66251 6.09940 6.13604 6.20524 6.34645 6.42243 6.66945 6.84928 7.21766 7.48806 8.95900 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030281 B = 0.003538 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.462195 B = 7912.179507 C = 8140.317015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.699 5.699 14 C 0.481 3.519 15 O -0.573 6.573 16 C 0.173 3.827 17 C -0.134 4.134 18 O -0.542 6.542 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.099 4.099 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.261 0.739 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.411 0.589 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.392 0.608 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -0.292 19.858 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.351 5.351 14 C 0.266 3.734 15 O -0.453 6.453 16 C 0.129 3.871 17 C -0.191 4.191 18 O -0.350 6.350 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.146 4.146 22 C -0.138 4.138 23 C -0.152 4.152 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.243 0.757 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.803 -0.297 19.884 19.967 hybrid contribution 0.060 -0.770 -1.525 1.710 sum -1.743 -1.066 18.358 18.472 Atomic orbital electron populations 1.21662 0.97032 0.98655 1.00432 1.18344 0.93327 0.92943 0.90234 1.21675 0.97900 0.97923 1.00352 1.21245 1.31887 1.12245 0.91601 0.93754 1.25446 0.95101 0.95575 1.00956 1.69899 1.36882 1.23221 1.23704 0.85824 0.78624 0.78827 0.79577 1.20236 1.20787 1.20274 1.21311 0.97040 0.95070 0.84271 1.46140 1.52142 1.31747 1.05065 1.21779 0.80991 0.84517 0.86087 1.90673 1.39827 1.27551 1.87208 1.20042 0.85457 0.93341 0.88310 1.21800 0.97460 0.95883 1.03957 1.86565 1.18237 1.38539 1.91609 1.20092 0.95040 0.99521 0.97547 1.21207 0.97202 0.97876 0.97395 1.21443 0.99637 0.96997 0.96496 1.21543 0.92227 0.99691 1.00373 1.21415 0.99323 0.97873 0.96587 1.21048 0.97745 0.97083 0.95823 0.94433 0.91910 0.96250 0.96304 0.91831 0.94650 0.92983 0.94299 0.94284 0.75120 0.90296 0.90782 0.89015 0.75734 0.84075 0.83415 0.83524 0.84371 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 4 C -0.53 -28.13 8.01 25.60 0.21 -27.93 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.54 5.15 84.66 0.44 1.97 16 7 N -0.90 -47.92 9.35 21.45 0.20 -47.72 16 8 Si 0.94 42.55 29.54 68.60 2.03 44.58 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.15 6.25 4.50 86.38 0.39 6.64 16 13 N -0.70 -24.27 4.87 -463.06 -2.25 -26.52 16 14 C 0.48 16.18 6.68 87.66 0.59 16.77 16 15 O -0.57 -23.40 15.20 -3.05 -0.05 -23.45 16 16 C 0.17 4.45 1.16 -12.28 -0.01 4.43 16 17 C -0.13 -3.00 8.55 71.98 0.62 -2.39 16 18 O -0.54 -12.05 11.50 -148.98 -1.71 -13.76 16 19 C -0.12 -3.06 4.56 -19.86 -0.09 -3.15 16 20 C -0.12 -2.52 9.24 22.27 0.21 -2.32 16 21 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 22 C -0.12 -2.20 10.05 22.27 0.22 -1.97 16 23 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 24 C -0.10 -2.53 8.01 22.27 0.18 -2.36 16 25 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 26 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 30 H 0.03 1.34 6.86 -2.39 -0.02 1.32 16 31 H 0.26 13.42 8.31 -92.70 -0.77 12.65 16 32 H 0.04 1.76 8.14 -2.38 -0.02 1.75 16 33 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.41 12.99 5.59 -92.71 -0.52 12.48 16 35 H 0.08 1.74 7.01 -2.39 -0.02 1.72 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.39 6.88 7.75 -74.06 -0.57 6.30 16 39 H 0.14 2.37 6.43 -2.91 -0.02 2.35 16 40 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 41 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 43 H 0.11 3.04 6.97 -2.91 -0.02 3.02 16 Total: -1.00 -62.40 343.12 2.46 -59.94 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.07 Total: 29.14 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.32 Total: -22.21 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -2.05 Total: -74.24 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.76 Total: -37.21 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -62.40 2.46 -59.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817612634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.299 kcal (2) G-P(sol) polarization free energy of solvation -62.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds