Wall clock time and date at job start Tue Mar 31 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38163 * 120.03092 * 2 1 4 4 C 1.38243 * 120.05834 * 179.97438 * 3 2 1 5 5 C 1.38290 * 120.11015 * 0.02562 * 4 3 2 6 6 C 1.38122 * 120.05596 * 359.68285 * 5 4 3 7 7 C 1.38715 * 120.02787 * 179.97438 * 2 1 3 8 8 O 1.35905 * 120.05304 * 0.02562 * 7 2 1 9 9 C 1.42900 * 116.99989 * 180.02562 * 8 7 2 10 10 C 1.52998 * 109.47415 * 179.97438 * 9 8 7 11 11 N 1.46897 * 109.47396 * 64.99365 * 10 9 8 12 12 C 1.48539 * 110.99979 * 307.39971 * 11 10 9 13 13 C 1.55101 * 103.28523 * 200.33102 * 12 11 10 14 14 C 1.54601 * 102.84531 * 37.30366 * 13 12 11 15 15 O 1.42901 * 110.30513 * 97.11886 * 14 13 12 16 16 C 1.50697 * 110.31058 * 219.18709 * 14 13 12 17 17 H 1.08001 * 120.00199 * 121.74514 * 16 14 13 18 18 C 1.37885 * 120.00010 * 301.47276 * 16 14 13 19 19 N 1.31513 * 119.99702 * 354.62803 * 18 16 14 20 20 Si 1.86798 * 119.99975 * 174.62932 * 18 16 14 21 21 H 1.48498 * 109.47073 * 94.97626 * 20 18 16 22 22 H 1.48503 * 109.46969 * 214.97545 * 20 18 16 23 23 H 1.48493 * 109.47331 * 334.97654 * 20 18 16 24 24 C 1.47895 * 111.00383 * 190.00516 * 11 10 9 25 25 H 1.09001 * 109.47097 * 270.01944 * 1 2 3 26 26 H 1.08997 * 109.46870 * 30.01627 * 1 2 3 27 27 H 1.08996 * 109.47491 * 150.02293 * 1 2 3 28 28 H 1.08003 * 119.97257 * 359.95953 * 3 2 1 29 29 H 1.07994 * 119.94709 * 179.97438 * 4 3 2 30 30 H 1.07997 * 119.97211 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.03172 * 180.31999 * 6 5 4 32 32 H 1.08996 * 109.47417 * 59.99451 * 9 8 7 33 33 H 1.09004 * 109.46784 * 299.99471 * 9 8 7 34 34 H 1.09002 * 109.46809 * 304.99856 * 10 9 8 35 35 H 1.08997 * 109.47170 * 184.99618 * 10 9 8 36 36 H 1.08995 * 110.66728 * 318.71207 * 12 11 10 37 37 H 1.08998 * 110.66430 * 81.67999 * 12 11 10 38 38 H 1.09000 * 110.70964 * 278.99847 * 13 12 11 39 39 H 1.08994 * 110.81390 * 155.66760 * 13 12 11 40 40 H 0.96696 * 113.99894 * 56.44719 * 15 14 13 41 41 H 0.97004 * 119.99688 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.91811 * 26.48820 * 24 11 10 43 43 H 1.09004 * 110.08358 * 265.28955 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2752 0.0009 0.0005 6 6 3.5887 -1.1976 0.0066 7 6 2.2012 -1.2010 0.0005 8 8 1.5233 -2.3789 0.0005 9 6 2.3033 -3.5763 0.0017 10 6 1.3731 -4.7910 0.0021 11 7 0.6110 -4.8247 -1.2532 12 6 -0.0693 -3.5271 -1.4980 13 6 -1.1917 -3.8971 -2.5025 14 6 -1.6490 -5.2892 -2.0095 15 8 -2.8069 -5.1663 -1.1811 16 6 -1.9391 -6.1901 -3.1822 17 1 -1.4073 -7.1238 -3.2904 18 6 -2.8876 -5.8250 -4.1139 19 7 -3.6133 -4.7447 -3.9248 20 14 -3.1418 -6.8649 -5.6448 21 1 -4.2515 -7.8241 -5.4129 22 1 -3.4806 -5.9837 -6.7911 23 1 -1.8956 -7.6134 -5.9473 24 6 -0.4640 -5.8386 -1.1937 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5134 28 1 1.6585 2.1315 -0.0007 29 1 4.1196 2.1328 0.0001 30 1 5.3552 0.0040 0.0005 31 1 4.1313 -2.1314 0.0118 32 1 2.9315 -3.5998 0.8921 33 1 2.9328 -3.6006 -0.8879 34 1 0.6839 -4.7204 0.8437 35 1 1.9649 -5.7018 0.0925 36 1 -0.4952 -3.1358 -0.5742 37 1 0.6216 -2.8073 -1.9368 38 1 -0.7969 -3.9577 -3.5166 39 1 -2.0112 -3.1805 -2.4487 40 1 -3.5492 -4.7164 -1.6071 41 1 -4.2804 -4.4876 -4.5805 42 1 -0.7676 -5.9976 -0.1590 43 1 -0.1180 -6.7769 -1.6273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829969014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:31 Heat of formation + Delta-G solvation = -77.820912 kcal Electronic energy + Delta-G solvation = -23915.898982 eV Core-core repulsion = 20539.368454 eV Total energy + Delta-G solvation = -3376.530529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29095 -40.04657 -38.39864 -36.51598 -34.17924 -33.78022 -32.59688 -30.82693 -29.88451 -29.11415 -27.60052 -26.28916 -24.45672 -22.63948 -22.46109 -21.48174 -21.27543 -19.07255 -18.99489 -17.54939 -17.00078 -16.85494 -16.54045 -16.30939 -16.01263 -15.55412 -15.43484 -14.91404 -14.74356 -14.39112 -14.06108 -13.94957 -13.91255 -13.45508 -13.35828 -13.15767 -13.01921 -12.84226 -12.68268 -12.53050 -12.27481 -12.25031 -12.14184 -12.11052 -11.88406 -11.68121 -11.47124 -11.07258 -10.55819 -10.09650 -9.72531 -9.33716 -8.99236 -8.20191 -6.33057 0.42272 0.55594 1.40255 1.42219 1.52906 2.31289 2.40287 2.86416 2.98445 3.14180 3.76245 3.90509 3.94893 4.01852 4.19122 4.23282 4.25056 4.36169 4.39698 4.44408 4.47275 4.56577 4.61794 4.66847 4.76203 4.79581 4.80829 4.84181 4.95631 5.02505 5.11673 5.27230 5.33853 5.43967 5.47680 5.56915 5.60177 5.64749 5.77379 5.94563 5.97222 6.17649 6.23324 6.54309 6.71327 7.34757 7.44494 8.86352 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.003856 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.902820 B = 7259.403539 C = 7643.089272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.140 4.140 3 C -0.090 4.090 4 C -0.161 4.161 5 C -0.091 4.091 6 C -0.215 4.215 7 C 0.107 3.893 8 O -0.323 6.323 9 C 0.064 3.936 10 C 0.045 3.955 11 N -0.519 5.519 12 C 0.069 3.931 13 C -0.111 4.111 14 C 0.226 3.774 15 O -0.601 6.601 16 C -0.555 4.555 17 H 0.054 0.946 18 C 0.028 3.972 19 N -0.913 5.913 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.062 3.938 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.116 0.884 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.374 0.626 41 H 0.267 0.733 42 H 0.035 0.965 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.677 10.220 8.481 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.141 4.141 3 C -0.108 4.108 4 C -0.179 4.179 5 C -0.109 4.109 6 C -0.233 4.233 7 C 0.062 3.938 8 O -0.237 6.237 9 C -0.011 4.011 10 C -0.083 4.083 11 N -0.244 5.244 12 C -0.059 4.059 13 C -0.150 4.150 14 C 0.187 3.813 15 O -0.410 6.410 16 C -0.593 4.593 17 H 0.072 0.928 18 C -0.172 4.172 19 N -0.552 5.552 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.205 1.205 23 H -0.195 1.195 24 C -0.066 4.066 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.134 0.866 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.223 0.777 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.106 9.836 8.435 19.902 hybrid contribution -1.329 -0.251 -0.682 1.515 sum 13.777 9.585 7.754 18.488 Atomic orbital electron populations 1.20618 0.90825 1.02618 1.02187 1.19554 0.96767 0.91238 1.06513 1.21170 0.94856 0.96816 0.97991 1.21374 0.94008 0.99145 1.03402 1.21277 1.01019 0.91511 0.97113 1.21489 0.92427 1.00731 1.08701 1.19217 0.91391 0.85962 0.97261 1.86302 1.36243 1.12805 1.88342 1.22914 0.93842 0.81562 1.02797 1.22538 0.97061 0.98085 0.90626 1.64880 1.22288 1.04745 1.32465 1.23075 0.94692 0.90905 0.97217 1.22819 0.96489 0.98158 0.97529 1.19650 0.82659 0.91815 0.87209 1.86109 1.26555 1.82646 1.45646 1.21949 1.22237 1.06384 1.08747 0.92814 1.25699 0.94716 0.96145 1.00670 1.69798 1.22866 1.25603 1.36961 0.85541 0.78348 0.78657 0.79055 1.20283 1.20533 1.19477 1.22696 0.90244 0.95713 0.97928 0.91348 0.90442 0.93153 0.83711 0.83498 0.83459 0.84248 0.89058 0.90890 0.94622 0.86563 0.94434 0.90884 0.93950 0.93595 0.77662 0.92323 0.94665 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.76 9.79 71.24 0.70 -2.06 16 2 C -0.14 -3.63 5.89 -19.77 -0.12 -3.75 16 3 C -0.09 -1.87 9.70 22.25 0.22 -1.65 16 4 C -0.16 -2.88 10.04 22.28 0.22 -2.66 16 5 C -0.09 -1.67 10.04 22.25 0.22 -1.45 16 6 C -0.21 -4.74 9.04 22.37 0.20 -4.54 16 7 C 0.11 2.90 6.66 22.51 0.15 3.05 16 8 O -0.32 -9.61 5.46 -92.48 -0.50 -10.11 16 9 C 0.06 1.58 4.79 71.98 0.35 1.92 16 10 C 0.04 1.31 5.60 86.30 0.48 1.79 16 11 N -0.52 -20.02 5.40 -882.70 -4.76 -24.78 16 12 C 0.07 2.82 4.48 86.71 0.39 3.21 16 13 C -0.11 -5.47 5.28 31.86 0.17 -5.30 16 14 C 0.23 11.73 0.98 -10.66 -0.01 11.72 16 15 O -0.60 -32.74 12.94 -148.98 -1.93 -34.67 16 16 C -0.56 -31.01 8.12 25.60 0.21 -30.80 16 17 H 0.05 2.99 7.36 -2.91 -0.02 2.97 16 18 C 0.03 1.53 5.24 84.66 0.44 1.97 16 19 N -0.91 -50.46 10.97 21.45 0.24 -50.22 16 20 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C 0.06 2.76 6.17 86.45 0.53 3.30 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 27 H 0.05 1.57 6.78 -2.39 -0.02 1.56 16 28 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.14 2.56 6.30 -2.91 -0.02 2.55 16 32 H 0.09 1.71 7.65 -2.39 -0.02 1.69 16 33 H 0.07 1.77 7.67 -2.38 -0.02 1.75 16 34 H 0.04 1.10 7.81 -2.39 -0.02 1.09 16 35 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.04 1.58 6.67 -2.39 -0.02 1.57 16 37 H 0.07 2.91 7.05 -2.39 -0.02 2.89 16 38 H 0.04 2.23 7.85 -2.39 -0.02 2.21 16 39 H 0.05 2.36 7.90 -2.39 -0.02 2.34 16 40 H 0.37 20.70 7.36 -74.06 -0.55 20.16 16 41 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 42 H 0.04 1.54 7.39 -2.39 -0.02 1.53 16 43 H 0.08 3.38 7.39 -2.38 -0.02 3.36 16 Total: -1.00 -63.03 339.48 -0.32 -63.35 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.46 Total: 36.24 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 4.15 Total: -25.26 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -4.53 Total: -75.01 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -2.43 Total: -44.78 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -63.03 -0.32 -63.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829969014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.473 kcal (2) G-P(sol) polarization free energy of solvation -63.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds