Wall clock time and date at job start Tue Mar 31 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38172 * 120.02551 * 2 1 4 4 C 1.38245 * 120.05216 * 179.97438 * 3 2 1 5 5 C 1.38287 * 120.11339 * 0.02562 * 4 3 2 6 6 C 1.38125 * 120.05449 * 359.95814 * 5 4 3 7 7 C 1.38709 * 120.02805 * 179.97438 * 2 1 3 8 8 O 1.35898 * 120.05670 * 359.97438 * 7 2 1 9 9 C 1.42902 * 116.99893 * 180.02562 * 8 7 2 10 10 C 1.53004 * 109.46973 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47305 * 64.99383 * 10 9 8 12 12 C 1.48534 * 110.99744 * 52.60439 * 11 10 9 13 13 C 1.54943 * 103.22459 * 159.71790 * 12 11 10 14 14 C 1.54588 * 102.92173 * 322.58651 * 13 12 11 15 15 O 1.42903 * 110.39693 * 262.99720 * 14 13 12 16 16 C 1.50699 * 110.30814 * 140.87387 * 14 13 12 17 17 H 1.07998 * 120.00408 * 244.28198 * 16 14 13 18 18 C 1.37881 * 120.00133 * 64.28536 * 16 14 13 19 19 N 1.31512 * 119.99848 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00102 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47226 * 89.99856 * 20 18 16 22 22 H 1.48506 * 109.47381 * 209.99831 * 20 18 16 23 23 H 1.48503 * 109.47191 * 329.99958 * 20 18 16 24 24 C 1.47902 * 111.00010 * 170.00127 * 11 10 9 25 25 H 1.08992 * 109.47225 * 90.00117 * 1 2 3 26 26 H 1.08996 * 109.46936 * 210.00313 * 1 2 3 27 27 H 1.09003 * 109.46933 * 330.00011 * 1 2 3 28 28 H 1.08002 * 119.97210 * 0.25456 * 3 2 1 29 29 H 1.07997 * 119.93864 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.97064 * 179.97438 * 5 4 3 31 31 H 1.07999 * 120.02599 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.46512 * 299.99656 * 9 8 7 33 33 H 1.08995 * 109.47323 * 60.00112 * 9 8 7 34 34 H 1.08992 * 109.46942 * 185.00028 * 10 9 8 35 35 H 1.09003 * 109.46961 * 304.99754 * 10 9 8 36 36 H 1.08994 * 110.66961 * 278.15403 * 12 11 10 37 37 H 1.09001 * 110.66889 * 41.29196 * 12 11 10 38 38 H 1.09006 * 110.72307 * 204.22766 * 13 12 11 39 39 H 1.08993 * 110.87555 * 81.01959 * 13 12 11 40 40 H 0.96699 * 113.99647 * 295.76858 * 15 14 13 41 41 H 0.97000 * 120.00289 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.91672 * 333.51134 * 24 11 10 43 43 H 1.08996 * 109.92015 * 94.80472 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1963 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2753 0.0010 0.0005 6 6 3.5887 -1.1975 0.0009 7 6 2.2012 -1.2009 0.0005 8 8 1.5235 -2.3788 0.0016 9 6 2.3035 -3.5761 0.0027 10 6 1.3733 -4.7909 0.0031 11 7 0.6112 -4.8246 -1.2523 12 6 1.5166 -4.7417 -2.4269 13 6 0.6523 -5.3085 -3.5812 14 6 -0.1356 -6.4482 -2.8958 15 8 0.5066 -7.7044 -3.1230 16 6 -1.5525 -6.4860 -3.4077 17 1 -2.3746 -6.2847 -2.7370 18 6 -1.7993 -6.7777 -4.7325 19 7 -0.7981 -7.0224 -5.5495 20 14 -3.5555 -6.8238 -5.3673 21 1 -3.9431 -5.4739 -5.8499 22 1 -3.6522 -7.7960 -6.4858 23 1 -4.4674 -7.2382 -4.2709 24 6 -0.1187 -6.1030 -1.3951 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6584 2.1316 0.0042 29 1 4.1195 2.1330 0.0001 30 1 5.3552 0.0042 0.0005 31 1 4.1315 -2.1312 0.0013 32 1 2.9323 -3.6008 -0.8874 33 1 2.9324 -3.5993 0.8926 34 1 1.9651 -5.7017 0.0935 35 1 0.6841 -4.7204 0.8447 36 1 1.7942 -3.7068 -2.6264 37 1 2.4036 -5.3563 -2.2730 38 1 1.2834 -5.7011 -4.3786 39 1 -0.0265 -4.5483 -3.9675 40 1 0.5260 -7.9739 -4.0514 41 1 -0.9717 -7.2273 -6.4816 42 1 0.3946 -6.8877 -0.8393 43 1 -1.1389 -5.9911 -1.0283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829969018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:35 Heat of formation + Delta-G solvation = -60.032974 kcal Electronic energy + Delta-G solvation = -23495.904810 eV Core-core repulsion = 20120.145624 eV Total energy + Delta-G solvation = -3375.759186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21638 -38.53043 -37.28434 -34.88362 -32.82413 -32.05003 -31.17931 -29.81207 -28.34025 -27.45326 -26.66112 -24.43488 -23.25287 -21.82843 -21.34505 -19.89604 -19.37640 -18.01630 -17.08324 -16.15434 -15.91059 -15.68536 -14.93691 -14.85499 -14.68670 -14.27201 -13.98650 -13.79942 -13.23132 -13.14743 -13.00278 -12.71860 -12.24001 -12.18184 -12.00668 -11.77791 -11.57783 -11.33206 -11.26671 -11.03311 -10.96729 -10.76100 -10.60394 -10.51080 -10.43567 -10.26939 -9.91267 -9.14404 -8.86884 -8.56605 -8.09660 -8.05343 -7.76072 -6.17594 -4.23320 1.27810 1.43900 3.26232 3.29663 3.32944 3.37145 3.72980 4.34282 4.50903 4.73795 4.76782 4.98009 5.03485 5.11984 5.16295 5.24285 5.27500 5.40975 5.53884 5.66178 5.68291 5.79554 5.82655 5.84572 5.87597 6.05286 6.15978 6.24811 6.26583 6.32406 6.41582 6.43258 6.50930 6.51117 6.79454 6.94767 7.07336 7.30064 7.49985 7.54599 7.67510 7.72767 7.87214 8.18582 8.78234 9.43396 9.54242 10.90187 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.003602 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.984711 B = 7772.405218 C = 8279.450865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.118 4.118 3 C -0.086 4.086 4 C -0.163 4.163 5 C -0.088 4.088 6 C -0.211 4.211 7 C 0.136 3.864 8 O -0.290 6.290 9 C 0.062 3.938 10 C 0.046 3.954 11 N -0.505 5.505 12 C 0.030 3.970 13 C -0.117 4.117 14 C 0.243 3.757 15 O -0.596 6.596 16 C -0.527 4.527 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.053 3.947 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.384 0.616 41 H 0.266 0.734 42 H 0.035 0.965 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.599 12.243 10.342 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C -0.104 4.104 4 C -0.181 4.181 5 C -0.106 4.106 6 C -0.230 4.230 7 C 0.090 3.910 8 O -0.202 6.202 9 C -0.013 4.013 10 C -0.082 4.082 11 N -0.230 5.230 12 C -0.098 4.098 13 C -0.156 4.156 14 C 0.203 3.797 15 O -0.406 6.406 16 C -0.565 4.565 17 H 0.081 0.919 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.728 3.272 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.074 4.074 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.235 0.765 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.129 12.599 10.837 18.500 hybrid contribution 0.002 -0.764 -1.091 1.332 sum 8.131 11.835 9.745 17.354 Atomic orbital electron populations 1.20609 0.90324 1.02577 1.02667 1.19329 0.96755 0.90344 1.05395 1.20869 0.94090 0.96740 0.98691 1.20971 0.94243 0.97885 1.05048 1.20881 0.99536 0.91974 0.98223 1.21260 0.93176 0.99370 1.09147 1.18958 0.90346 0.86369 0.95376 1.86232 1.34904 1.11545 1.87526 1.22971 0.94118 0.83272 1.00941 1.22339 0.96208 0.94043 0.95633 1.64884 1.23392 1.34403 1.00285 1.23308 0.94691 0.99247 0.92515 1.22961 0.97590 0.99593 0.95410 1.19346 0.90790 0.81087 0.88449 1.86075 1.81242 1.39842 1.33425 1.21710 0.92419 1.47568 0.94845 0.91943 1.25014 0.97661 0.94101 0.96614 1.69617 1.30745 1.48372 1.05410 0.86455 0.84411 0.77874 0.78433 1.20522 1.21185 1.19789 1.22899 0.98321 0.87903 0.98271 0.91134 0.90799 0.92131 0.85687 0.86266 0.86188 0.85694 0.91754 0.92197 0.92919 0.89964 0.91816 0.95075 0.91805 0.91372 0.76481 0.92376 0.94629 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.79 36.01 0.35 -0.92 16 2 C -0.12 -1.54 5.89 -104.47 -0.62 -2.15 16 3 C -0.09 -0.95 9.70 -39.60 -0.38 -1.33 16 4 C -0.16 -1.69 10.04 -39.56 -0.40 -2.09 16 5 C -0.09 -0.95 10.04 -39.61 -0.40 -1.34 16 6 C -0.21 -2.59 9.04 -39.43 -0.36 -2.95 16 7 C 0.14 1.91 6.66 -39.22 -0.26 1.65 16 8 O -0.29 -4.46 9.13 -19.42 -0.18 -4.64 16 9 C 0.06 0.85 4.56 37.16 0.17 1.02 16 10 C 0.05 0.72 5.41 -3.82 -0.02 0.70 16 11 N -0.50 -9.86 5.34 -230.45 -1.23 -11.09 16 12 C 0.03 0.59 5.09 -1.89 -0.01 0.58 16 13 C -0.12 -2.75 5.50 -24.87 -0.14 -2.89 16 14 C 0.24 6.11 0.99 -90.42 -0.09 6.02 16 15 O -0.60 -15.63 12.93 -35.23 -0.46 -16.09 16 16 C -0.53 -14.34 8.10 -34.44 -0.28 -14.62 16 17 H 0.06 1.70 7.34 -52.49 -0.39 1.31 16 18 C 0.07 1.81 5.26 -17.82 -0.09 1.71 16 19 N -0.90 -24.29 10.88 55.43 0.60 -23.68 16 20 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.05 1.18 6.17 -2.75 -0.02 1.16 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.98 7.53 -51.93 -0.39 0.59 16 27 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 32 H 0.06 0.88 6.04 -51.93 -0.31 0.57 16 33 H 0.06 0.66 7.66 -51.93 -0.40 0.27 16 34 H 0.05 0.78 7.81 -51.93 -0.41 0.37 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.20 7.56 -51.93 -0.39 0.81 16 37 H 0.03 0.59 8.01 -51.93 -0.42 0.18 16 38 H 0.06 1.55 8.06 -51.93 -0.42 1.14 16 39 H 0.07 1.72 7.85 -51.93 -0.41 1.31 16 40 H 0.38 10.25 7.05 45.56 0.32 10.57 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.04 0.76 7.39 -51.93 -0.38 0.38 16 43 H 0.08 1.78 7.39 -51.93 -0.38 1.39 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -28.83 344.22 -9.60 -38.43 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.97 Total: 11.39 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.54 Total: -15.45 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.63 Total: -34.78 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.63 Total: -20.73 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.83 -9.60 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829969018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.601 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds