Wall clock time and date at job start Tue Mar 31 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38172 * 120.02551 * 2 1 4 4 C 1.38245 * 120.05216 * 179.97438 * 3 2 1 5 5 C 1.38287 * 120.11339 * 0.02562 * 4 3 2 6 6 C 1.38125 * 120.05449 * 359.95814 * 5 4 3 7 7 C 1.38709 * 120.02805 * 179.97438 * 2 1 3 8 8 O 1.35898 * 120.05670 * 359.97438 * 7 2 1 9 9 C 1.42902 * 116.99893 * 180.02562 * 8 7 2 10 10 C 1.53004 * 109.46973 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47305 * 64.99383 * 10 9 8 12 12 C 1.48534 * 110.99744 * 52.60439 * 11 10 9 13 13 C 1.54943 * 103.22459 * 159.71790 * 12 11 10 14 14 C 1.54588 * 102.92173 * 322.58651 * 13 12 11 15 15 O 1.42903 * 110.39693 * 262.99720 * 14 13 12 16 16 C 1.50699 * 110.30814 * 140.87387 * 14 13 12 17 17 H 1.07998 * 120.00408 * 244.28198 * 16 14 13 18 18 C 1.37881 * 120.00133 * 64.28536 * 16 14 13 19 19 N 1.31512 * 119.99848 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00102 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47226 * 89.99856 * 20 18 16 22 22 H 1.48506 * 109.47381 * 209.99831 * 20 18 16 23 23 H 1.48503 * 109.47191 * 329.99958 * 20 18 16 24 24 C 1.47902 * 111.00010 * 170.00127 * 11 10 9 25 25 H 1.08992 * 109.47225 * 90.00117 * 1 2 3 26 26 H 1.08996 * 109.46936 * 210.00313 * 1 2 3 27 27 H 1.09003 * 109.46933 * 330.00011 * 1 2 3 28 28 H 1.08002 * 119.97210 * 0.25456 * 3 2 1 29 29 H 1.07997 * 119.93864 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.97064 * 179.97438 * 5 4 3 31 31 H 1.07999 * 120.02599 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.46512 * 299.99656 * 9 8 7 33 33 H 1.08995 * 109.47323 * 60.00112 * 9 8 7 34 34 H 1.08992 * 109.46942 * 185.00028 * 10 9 8 35 35 H 1.09003 * 109.46961 * 304.99754 * 10 9 8 36 36 H 1.08994 * 110.66961 * 278.15403 * 12 11 10 37 37 H 1.09001 * 110.66889 * 41.29196 * 12 11 10 38 38 H 1.09006 * 110.72307 * 204.22766 * 13 12 11 39 39 H 1.08993 * 110.87555 * 81.01959 * 13 12 11 40 40 H 0.96699 * 113.99647 * 295.76858 * 15 14 13 41 41 H 0.97000 * 120.00289 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.91672 * 333.51134 * 24 11 10 43 43 H 1.08996 * 109.92015 * 94.80472 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1963 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2753 0.0010 0.0005 6 6 3.5887 -1.1975 0.0009 7 6 2.2012 -1.2009 0.0005 8 8 1.5235 -2.3788 0.0016 9 6 2.3035 -3.5761 0.0027 10 6 1.3733 -4.7909 0.0031 11 7 0.6112 -4.8246 -1.2523 12 6 1.5166 -4.7417 -2.4269 13 6 0.6523 -5.3085 -3.5812 14 6 -0.1356 -6.4482 -2.8958 15 8 0.5066 -7.7044 -3.1230 16 6 -1.5525 -6.4860 -3.4077 17 1 -2.3746 -6.2847 -2.7370 18 6 -1.7993 -6.7777 -4.7325 19 7 -0.7981 -7.0224 -5.5495 20 14 -3.5555 -6.8238 -5.3673 21 1 -3.9431 -5.4739 -5.8499 22 1 -3.6522 -7.7960 -6.4858 23 1 -4.4674 -7.2382 -4.2709 24 6 -0.1187 -6.1030 -1.3951 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6584 2.1316 0.0042 29 1 4.1195 2.1330 0.0001 30 1 5.3552 0.0042 0.0005 31 1 4.1315 -2.1312 0.0013 32 1 2.9323 -3.6008 -0.8874 33 1 2.9324 -3.5993 0.8926 34 1 1.9651 -5.7017 0.0935 35 1 0.6841 -4.7204 0.8447 36 1 1.7942 -3.7068 -2.6264 37 1 2.4036 -5.3563 -2.2730 38 1 1.2834 -5.7011 -4.3786 39 1 -0.0265 -4.5483 -3.9675 40 1 0.5260 -7.9739 -4.0514 41 1 -0.9717 -7.2273 -6.4816 42 1 0.3946 -6.8877 -0.8393 43 1 -1.1389 -5.9911 -1.0283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829969018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:35 Heat of formation + Delta-G solvation = -78.964488 kcal Electronic energy + Delta-G solvation = -23496.725742 eV Core-core repulsion = 20120.145624 eV Total energy + Delta-G solvation = -3376.580118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19651 -40.12340 -38.38022 -36.64226 -34.13203 -33.73606 -32.62882 -30.80727 -30.02231 -29.07768 -27.57807 -26.26549 -24.53238 -22.95361 -22.31366 -21.30440 -21.27098 -19.13136 -18.97493 -17.42243 -16.96488 -16.89040 -16.55917 -16.29473 -16.22665 -15.69088 -15.29639 -15.15139 -14.45500 -14.32145 -14.18422 -13.97577 -13.95435 -13.48421 -13.31393 -13.11505 -13.03673 -12.93347 -12.71429 -12.52630 -12.34002 -12.21628 -12.16969 -12.06462 -11.90474 -11.74319 -11.56879 -11.08358 -10.61457 -10.10677 -9.72548 -9.30952 -8.99006 -8.22192 -6.35536 0.42145 0.55799 1.40315 1.41895 1.51813 2.30607 2.39132 2.86504 2.95990 3.11943 3.74060 3.88770 3.91388 4.02020 4.11361 4.21694 4.23800 4.27172 4.32994 4.40124 4.45747 4.52222 4.56060 4.63704 4.75573 4.79309 4.81468 4.84935 4.85588 5.02336 5.09217 5.21949 5.36575 5.39746 5.47292 5.57800 5.58654 5.64736 5.76016 5.94413 5.97222 6.13979 6.21898 6.57357 6.68596 7.34356 7.44020 8.83931 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.003602 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.984711 B = 7772.405218 C = 8279.450865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.141 4.141 3 C -0.089 4.089 4 C -0.162 4.162 5 C -0.092 4.092 6 C -0.220 4.220 7 C 0.107 3.893 8 O -0.314 6.314 9 C 0.066 3.934 10 C 0.045 3.955 11 N -0.514 5.514 12 C 0.046 3.954 13 C -0.110 4.110 14 C 0.228 3.772 15 O -0.601 6.601 16 C -0.555 4.555 17 H 0.053 0.947 18 C 0.027 3.973 19 N -0.915 5.915 20 Si 0.960 3.040 21 H -0.276 1.276 22 H -0.279 1.279 23 H -0.272 1.272 24 C 0.062 3.938 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.042 0.958 40 H 0.378 0.622 41 H 0.269 0.731 42 H 0.040 0.960 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.690 13.689 11.153 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.141 4.141 3 C -0.107 4.107 4 C -0.180 4.180 5 C -0.110 4.110 6 C -0.238 4.238 7 C 0.061 3.939 8 O -0.227 6.227 9 C -0.009 4.009 10 C -0.083 4.083 11 N -0.239 5.239 12 C -0.082 4.082 13 C -0.149 4.149 14 C 0.188 3.812 15 O -0.410 6.410 16 C -0.593 4.593 17 H 0.071 0.929 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.785 3.215 21 H -0.202 1.202 22 H -0.204 1.204 23 H -0.197 1.197 24 C -0.066 4.066 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.229 0.771 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.234 14.053 11.662 20.464 hybrid contribution -0.293 -1.155 -1.326 1.783 sum 8.941 12.898 10.336 18.792 Atomic orbital electron populations 1.20562 0.90400 1.02783 1.02049 1.19606 0.97124 0.91024 1.06395 1.21196 0.94769 0.96890 0.97831 1.21379 0.94137 0.99039 1.03460 1.21264 1.00972 0.91559 0.97172 1.21476 0.92595 1.00632 1.09123 1.19251 0.91318 0.86125 0.97168 1.86181 1.36010 1.12347 1.88209 1.22953 0.93534 0.82146 1.02268 1.22446 0.96583 0.95741 0.93524 1.64827 1.24372 1.32790 1.01899 1.23139 0.94226 0.99761 0.91051 1.22739 0.97326 0.98546 0.96281 1.19586 0.90114 0.80939 0.90575 1.86064 1.81362 1.40653 1.32952 1.21975 0.93369 1.48579 0.95403 0.92874 1.25697 1.01250 0.93640 0.96695 1.69693 1.32151 1.48153 1.05578 0.85533 0.80131 0.77934 0.77863 1.20213 1.20428 1.19686 1.22706 0.98522 0.89255 0.96108 0.92146 0.92612 0.89879 0.83432 0.83456 0.83613 0.84671 0.91865 0.89329 0.91572 0.89320 0.90705 0.93851 0.93250 0.93899 0.77149 0.92140 0.94134 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 9.79 71.24 0.70 -1.74 16 2 C -0.14 -3.56 5.89 -19.77 -0.12 -3.67 16 3 C -0.09 -1.77 9.70 22.26 0.22 -1.56 16 4 C -0.16 -2.87 10.04 22.28 0.22 -2.64 16 5 C -0.09 -1.72 10.04 22.25 0.22 -1.49 16 6 C -0.22 -4.99 9.04 22.37 0.20 -4.78 16 7 C 0.11 2.92 6.66 22.51 0.15 3.07 16 8 O -0.31 -9.50 9.13 -92.40 -0.84 -10.34 16 9 C 0.07 1.69 4.56 71.98 0.33 2.02 16 10 C 0.04 1.33 5.41 86.31 0.47 1.79 16 11 N -0.51 -19.85 5.34 -883.02 -4.72 -24.57 16 12 C 0.05 1.79 5.09 86.65 0.44 2.23 16 13 C -0.11 -5.30 5.50 31.80 0.17 -5.12 16 14 C 0.23 11.63 0.99 -10.66 -0.01 11.62 16 15 O -0.60 -31.99 12.93 -148.98 -1.93 -33.92 16 16 C -0.56 -30.84 8.10 25.60 0.21 -30.64 16 17 H 0.05 2.97 7.34 -2.91 -0.02 2.94 16 18 C 0.03 1.46 5.26 84.66 0.45 1.90 16 19 N -0.92 -49.95 10.88 21.45 0.23 -49.72 16 20 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 C 0.06 2.74 6.17 86.45 0.53 3.27 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.51 7.53 -2.39 -0.02 1.49 16 27 H 0.08 1.53 8.09 -2.39 -0.02 1.52 16 28 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 29 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.14 2.65 6.30 -2.91 -0.02 2.63 16 32 H 0.06 1.61 6.04 -2.39 -0.01 1.60 16 33 H 0.09 1.75 7.66 -2.39 -0.02 1.73 16 34 H 0.07 1.80 7.81 -2.39 -0.02 1.78 16 35 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.07 2.76 7.56 -2.39 -0.02 2.75 16 37 H 0.04 1.59 8.01 -2.39 -0.02 1.57 16 38 H 0.05 2.46 8.06 -2.38 -0.02 2.44 16 39 H 0.04 2.23 7.85 -2.39 -0.02 2.21 16 40 H 0.38 20.65 7.05 -74.06 -0.52 20.13 16 41 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 42 H 0.04 1.72 7.39 -2.39 -0.02 1.70 16 43 H 0.07 3.22 7.39 -2.39 -0.02 3.20 16 Total: -1.00 -62.33 344.22 -0.57 -62.89 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.48 Total: 36.08 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 4.18 Total: -25.74 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -4.49 Total: -74.28 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -2.77 Total: -44.27 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -62.33 -0.57 -62.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829969018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.072 kcal (2) G-P(sol) polarization free energy of solvation -62.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds