Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 119.95052 * 2 1 4 4 C 1.38140 * 120.06033 * 180.02562 * 3 2 1 5 5 C 1.38737 * 119.94366 * 0.02562 * 4 3 2 6 6 O 1.35896 * 120.05655 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00072 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47211 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.46965 * 65.00341 * 8 7 6 10 10 C 1.48553 * 111.00246 * 69.87556 * 9 8 7 11 11 C 1.54377 * 104.70416 * 159.09711 * 10 9 8 12 12 C 1.54261 * 105.05783 * 336.09168 * 11 10 9 13 13 O 1.42895 * 110.32744 * 118.99937 * 12 11 10 14 14 C 1.50706 * 110.32226 * 241.10056 * 12 11 10 15 15 H 1.08004 * 120.00018 * 117.38016 * 14 12 11 16 16 C 1.37875 * 119.99821 * 297.38816 * 14 12 11 17 17 N 1.31512 * 120.00150 * 3.75575 * 16 14 12 18 18 Si 1.86806 * 119.99716 * 183.75904 * 16 14 12 19 19 H 1.48500 * 109.47229 * 84.97588 * 18 16 14 20 20 H 1.48505 * 109.46922 * 204.97811 * 18 16 14 21 21 H 1.48503 * 109.47004 * 324.97509 * 18 16 14 22 22 C 1.48853 * 111.13230 * 185.19341 * 9 8 7 23 23 C 1.38730 * 119.88621 * 0.27285 * 5 4 3 24 24 C 1.38144 * 119.94553 * 359.47499 * 23 5 4 25 25 H 1.08997 * 109.47051 * 89.99915 * 1 2 3 26 26 H 1.08996 * 109.47565 * 210.00157 * 1 2 3 27 27 H 1.09000 * 109.46740 * 329.99921 * 1 2 3 28 28 H 1.08001 * 119.97017 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.02721 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46803 * 60.00397 * 7 6 5 31 31 H 1.08991 * 109.47470 * 300.00297 * 7 6 5 32 32 H 1.09005 * 109.46937 * 305.00580 * 8 7 6 33 33 H 1.09001 * 109.47112 * 185.00616 * 8 7 6 34 34 H 1.09009 * 110.41107 * 40.25538 * 10 9 8 35 35 H 1.08999 * 110.41356 * 277.93867 * 10 9 8 36 36 H 1.09003 * 110.32096 * 94.98155 * 11 10 9 37 37 H 1.08996 * 110.32697 * 217.08727 * 11 10 9 38 38 H 0.96695 * 114.00472 * 54.27997 * 13 12 11 39 39 H 0.97008 * 120.00008 * 180.02562 * 17 16 14 40 40 H 1.09010 * 110.39403 * 82.21677 * 22 9 8 41 41 H 1.09002 * 110.49900 * 319.84902 * 22 9 8 42 42 H 1.08001 * 120.02872 * 179.71821 * 23 5 4 43 43 H 1.08005 * 119.97377 * 180.27602 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1980 0.0000 4 6 3.5787 1.2007 -0.0005 5 6 4.2735 -0.0002 -0.0016 6 8 5.6324 -0.0003 -0.0016 7 6 6.2811 -1.2735 -0.0022 8 6 7.7980 -1.0731 -0.0014 9 7 8.2062 -0.4296 1.2544 10 6 8.0537 -1.3592 2.4031 11 6 8.9823 -0.7874 3.4958 12 6 10.0381 0.0387 2.7325 13 8 9.9804 1.4092 3.1329 14 6 11.4164 -0.5195 2.9772 15 1 11.9932 -0.9141 2.1537 16 6 11.9409 -0.5267 4.2522 17 7 11.2111 -0.1150 5.2658 18 14 13.6884 -1.1211 4.5399 19 1 14.6364 -0.0016 4.3090 20 1 13.8232 -1.6036 5.9379 21 1 13.9946 -2.2306 3.6016 22 6 9.6586 -0.1036 1.2429 23 6 3.5786 -1.2009 -0.0079 24 6 2.1971 -1.1982 -0.0021 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6560 2.1326 0.0004 29 1 4.1173 2.1368 -0.0010 30 1 5.9882 -1.8301 -0.8925 31 1 5.9882 -1.8309 0.8874 32 1 8.0813 -0.4405 -0.8427 33 1 8.2923 -2.0404 -0.0916 34 1 8.3696 -2.3643 2.1233 35 1 7.0203 -1.3691 2.7495 36 1 8.4188 -0.1471 4.1744 37 1 9.4595 -1.5966 4.0486 38 1 10.0581 1.5438 4.0873 39 1 11.5803 -0.1196 6.1629 40 1 9.8333 0.8339 0.7149 41 1 10.2273 -0.9107 0.7811 42 1 4.1171 -2.1370 -0.0133 43 1 1.6557 -2.1327 -0.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = -61.434746 kcal Electronic energy + Delta-G solvation = -23042.148692 eV Core-core repulsion = 19666.328721 eV Total energy + Delta-G solvation = -3375.819971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.11243 -38.47226 -37.48921 -34.86138 -32.22863 -32.10680 -31.13101 -30.76347 -28.21973 -27.56843 -26.19636 -24.46693 -23.30930 -22.00518 -21.20270 -20.01635 -19.38030 -18.16809 -16.95952 -16.02268 -15.91452 -15.42847 -15.19267 -14.83902 -14.47573 -14.20094 -13.99638 -13.70304 -13.52262 -13.49292 -13.09512 -12.88631 -12.39875 -12.25473 -12.06647 -11.74827 -11.61115 -11.34893 -11.25622 -11.04717 -10.95845 -10.69113 -10.61307 -10.45211 -10.39226 -10.30346 -9.81395 -9.12886 -9.04837 -8.56574 -8.07876 -7.99828 -7.78203 -6.17856 -4.26044 1.29958 1.40773 3.23857 3.30485 3.32604 3.32920 3.71919 4.30132 4.54039 4.70819 4.78437 4.89569 5.01421 5.09733 5.16980 5.22063 5.28303 5.35157 5.42943 5.50028 5.65003 5.67086 5.74207 5.82235 5.86360 5.99524 6.00707 6.07722 6.18652 6.26135 6.36414 6.45120 6.54257 6.65005 6.77853 6.96251 7.05134 7.34562 7.49700 7.53216 7.57848 7.70045 7.82850 8.25360 8.76101 9.42548 9.57066 10.88968 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036684 B = 0.002904 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.092137 B = 9640.033081 C = 9774.885832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.137 4.137 3 C -0.081 4.081 4 C -0.151 4.151 5 C 0.135 3.865 6 O -0.292 6.292 7 C 0.069 3.931 8 C 0.043 3.957 9 N -0.502 5.502 10 C 0.029 3.971 11 C -0.119 4.119 12 C 0.254 3.746 13 O -0.583 6.583 14 C -0.536 4.536 15 H 0.059 0.941 16 C 0.071 3.929 17 N -0.893 5.893 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.050 3.950 23 C -0.211 4.211 24 C -0.081 4.081 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.376 0.624 39 H 0.266 0.734 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.125 0.875 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.927 -3.099 -9.719 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C -0.099 4.099 4 C -0.169 4.169 5 C 0.089 3.911 6 O -0.205 6.205 7 C -0.007 4.007 8 C -0.086 4.086 9 N -0.227 5.227 10 C -0.099 4.099 11 C -0.158 4.158 12 C 0.214 3.786 13 O -0.391 6.391 14 C -0.575 4.575 15 H 0.077 0.923 16 C -0.132 4.132 17 N -0.532 5.532 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.077 4.077 23 C -0.230 4.230 24 C -0.099 4.099 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.225 0.775 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.143 0.857 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.181 -2.355 -10.127 20.082 hybrid contribution 1.501 -1.552 0.769 2.292 sum -15.679 -3.907 -9.358 18.673 Atomic orbital electron populations 1.20681 0.91350 1.02437 1.01842 1.19770 0.96010 0.93134 1.04835 1.20820 0.93030 0.97620 0.98419 1.20481 0.93687 0.96666 1.06081 1.19147 0.83239 0.93971 0.94778 1.86247 1.15143 1.31586 1.87498 1.22857 0.93174 0.83998 1.00641 1.22293 0.92137 0.98684 0.95524 1.65525 1.19111 1.36865 1.01150 1.23196 0.99728 0.93717 0.93231 1.22855 0.96075 1.00732 0.96102 1.19203 0.92035 0.79918 0.87490 1.86162 1.96422 1.27478 1.28993 1.21681 1.01308 1.40701 0.93800 0.92319 1.24989 0.97857 0.94453 0.95879 1.69753 1.36324 1.47513 0.99616 0.86524 0.84622 0.79031 0.77264 1.20378 1.21180 1.19992 1.23138 0.85604 0.99691 0.99294 1.21258 0.95312 0.97216 1.09211 1.20779 0.93304 0.97502 0.98313 0.91716 0.91933 0.91818 0.85652 0.85072 0.92258 0.92018 0.90037 0.92842 0.94985 0.92061 0.92764 0.90926 0.77509 0.92405 0.90866 0.93714 0.85668 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.14 -1.44 5.88 -104.60 -0.62 -2.05 16 3 C -0.08 -0.89 9.69 -39.61 -0.38 -1.27 16 4 C -0.15 -1.97 9.99 -39.43 -0.39 -2.36 16 5 C 0.13 1.92 6.69 -39.22 -0.26 1.66 16 6 O -0.29 -4.66 10.08 -19.41 -0.20 -4.86 16 7 C 0.07 0.94 4.88 37.16 0.18 1.12 16 8 C 0.04 0.66 5.21 -3.82 -0.02 0.64 16 9 N -0.50 -9.91 5.33 -229.71 -1.22 -11.14 16 10 C 0.03 0.57 5.73 -2.19 -0.01 0.56 16 11 C -0.12 -2.80 5.48 -25.35 -0.14 -2.94 16 12 C 0.25 6.42 1.05 -90.39 -0.09 6.32 16 13 O -0.58 -15.74 12.92 -35.23 -0.46 -16.20 16 14 C -0.54 -14.46 8.07 -34.44 -0.28 -14.74 16 15 H 0.06 1.57 7.57 -52.48 -0.40 1.17 16 16 C 0.07 1.88 5.09 -17.82 -0.09 1.79 16 17 N -0.89 -24.07 10.88 55.43 0.60 -23.47 16 18 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.05 1.10 5.78 -2.02 -0.01 1.09 16 23 C -0.21 -2.59 9.04 -39.43 -0.36 -2.95 16 24 C -0.08 -0.87 9.69 -39.60 -0.38 -1.26 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 30 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16 31 H 0.06 0.84 6.58 -51.93 -0.34 0.49 16 32 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 33 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 34 H 0.03 0.59 7.82 -51.92 -0.41 0.18 16 35 H 0.06 1.13 7.63 -51.93 -0.40 0.74 16 36 H 0.05 1.32 7.96 -51.93 -0.41 0.91 16 37 H 0.07 1.82 7.23 -51.93 -0.38 1.44 16 38 H 0.38 10.14 7.48 45.56 0.34 10.48 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.07 1.65 8.08 -51.92 -0.42 1.23 16 41 H 0.04 0.95 7.56 -51.93 -0.39 0.55 16 42 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 43 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -29.37 347.02 -9.59 -38.96 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.03 Total: 10.57 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.50 Total: -14.83 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: -0.62 Total: -34.60 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.65 Total: -21.05 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.37 -9.59 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.473 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds