Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 119.95052 * 2 1 4 4 C 1.38140 * 120.06033 * 180.02562 * 3 2 1 5 5 C 1.38737 * 119.94366 * 0.02562 * 4 3 2 6 6 O 1.35896 * 120.05655 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00072 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47211 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.46965 * 65.00341 * 8 7 6 10 10 C 1.48553 * 111.00246 * 69.87556 * 9 8 7 11 11 C 1.54377 * 104.70416 * 159.09711 * 10 9 8 12 12 C 1.54261 * 105.05783 * 336.09168 * 11 10 9 13 13 O 1.42895 * 110.32744 * 118.99937 * 12 11 10 14 14 C 1.50706 * 110.32226 * 241.10056 * 12 11 10 15 15 H 1.08004 * 120.00018 * 117.38016 * 14 12 11 16 16 C 1.37875 * 119.99821 * 297.38816 * 14 12 11 17 17 N 1.31512 * 120.00150 * 3.75575 * 16 14 12 18 18 Si 1.86806 * 119.99716 * 183.75904 * 16 14 12 19 19 H 1.48500 * 109.47229 * 84.97588 * 18 16 14 20 20 H 1.48505 * 109.46922 * 204.97811 * 18 16 14 21 21 H 1.48503 * 109.47004 * 324.97509 * 18 16 14 22 22 C 1.48853 * 111.13230 * 185.19341 * 9 8 7 23 23 C 1.38730 * 119.88621 * 0.27285 * 5 4 3 24 24 C 1.38144 * 119.94553 * 359.47499 * 23 5 4 25 25 H 1.08997 * 109.47051 * 89.99915 * 1 2 3 26 26 H 1.08996 * 109.47565 * 210.00157 * 1 2 3 27 27 H 1.09000 * 109.46740 * 329.99921 * 1 2 3 28 28 H 1.08001 * 119.97017 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.02721 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46803 * 60.00397 * 7 6 5 31 31 H 1.08991 * 109.47470 * 300.00297 * 7 6 5 32 32 H 1.09005 * 109.46937 * 305.00580 * 8 7 6 33 33 H 1.09001 * 109.47112 * 185.00616 * 8 7 6 34 34 H 1.09009 * 110.41107 * 40.25538 * 10 9 8 35 35 H 1.08999 * 110.41356 * 277.93867 * 10 9 8 36 36 H 1.09003 * 110.32096 * 94.98155 * 11 10 9 37 37 H 1.08996 * 110.32697 * 217.08727 * 11 10 9 38 38 H 0.96695 * 114.00472 * 54.27997 * 13 12 11 39 39 H 0.97008 * 120.00008 * 180.02562 * 17 16 14 40 40 H 1.09010 * 110.39403 * 82.21677 * 22 9 8 41 41 H 1.09002 * 110.49900 * 319.84902 * 22 9 8 42 42 H 1.08001 * 120.02872 * 179.71821 * 23 5 4 43 43 H 1.08005 * 119.97377 * 180.27602 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1980 0.0000 4 6 3.5787 1.2007 -0.0005 5 6 4.2735 -0.0002 -0.0016 6 8 5.6324 -0.0003 -0.0016 7 6 6.2811 -1.2735 -0.0022 8 6 7.7980 -1.0731 -0.0014 9 7 8.2062 -0.4296 1.2544 10 6 8.0537 -1.3592 2.4031 11 6 8.9823 -0.7874 3.4958 12 6 10.0381 0.0387 2.7325 13 8 9.9804 1.4092 3.1329 14 6 11.4164 -0.5195 2.9772 15 1 11.9932 -0.9141 2.1537 16 6 11.9409 -0.5267 4.2522 17 7 11.2111 -0.1150 5.2658 18 14 13.6884 -1.1211 4.5399 19 1 14.6364 -0.0016 4.3090 20 1 13.8232 -1.6036 5.9379 21 1 13.9946 -2.2306 3.6016 22 6 9.6586 -0.1036 1.2429 23 6 3.5786 -1.2009 -0.0079 24 6 2.1971 -1.1982 -0.0021 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6560 2.1326 0.0004 29 1 4.1173 2.1368 -0.0010 30 1 5.9882 -1.8301 -0.8925 31 1 5.9882 -1.8309 0.8874 32 1 8.0813 -0.4405 -0.8427 33 1 8.2923 -2.0404 -0.0916 34 1 8.3696 -2.3643 2.1233 35 1 7.0203 -1.3691 2.7495 36 1 8.4188 -0.1471 4.1744 37 1 9.4595 -1.5966 4.0486 38 1 10.0581 1.5438 4.0873 39 1 11.5803 -0.1196 6.1629 40 1 9.8333 0.8339 0.7149 41 1 10.2273 -0.9107 0.7811 42 1 4.1171 -2.1370 -0.0133 43 1 1.6557 -2.1327 -0.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829974904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = -81.036176 kcal Electronic energy + Delta-G solvation = -23042.998674 eV Core-core repulsion = 19666.328721 eV Total energy + Delta-G solvation = -3376.669953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09211 -40.05276 -38.57693 -36.64367 -34.18626 -33.25097 -32.20567 -31.89120 -29.88164 -29.21031 -27.05616 -26.23692 -24.49150 -23.13161 -22.23955 -21.43508 -21.24138 -19.16280 -18.96929 -17.37259 -17.03916 -16.92671 -16.56491 -16.19319 -15.71567 -15.64668 -15.29702 -15.01388 -14.66537 -14.43072 -14.36390 -14.24476 -14.11521 -13.33742 -13.23327 -13.15302 -12.95010 -12.82002 -12.73539 -12.50262 -12.35162 -12.26728 -12.14871 -12.09913 -11.75591 -11.60209 -11.51008 -11.06469 -10.60102 -10.10103 -9.92303 -9.32481 -8.91620 -8.20452 -6.36372 0.42562 0.51593 1.40094 1.42522 1.50622 2.33448 2.38102 2.83940 3.04047 3.09919 3.78066 3.91559 3.98516 4.01300 4.05509 4.12549 4.20298 4.29980 4.32790 4.46284 4.48484 4.49237 4.50379 4.70853 4.75312 4.81010 4.87401 4.88514 4.91755 5.13815 5.14243 5.19543 5.21711 5.42183 5.42636 5.46374 5.58629 5.71236 5.72266 5.83777 5.94598 6.17727 6.28635 6.59391 6.70049 7.35042 7.45723 8.84997 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036684 B = 0.002904 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.092137 B = 9640.033081 C = 9774.885832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C -0.085 4.085 4 C -0.172 4.172 5 C 0.105 3.895 6 O -0.322 6.322 7 C 0.071 3.929 8 C 0.041 3.959 9 N -0.515 5.515 10 C 0.041 3.959 11 C -0.111 4.111 12 C 0.234 3.766 13 O -0.595 6.595 14 C -0.559 4.559 15 H 0.055 0.945 16 C 0.028 3.972 17 N -0.911 5.911 18 Si 0.960 3.040 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.269 1.269 22 C 0.058 3.942 23 C -0.216 4.216 24 C -0.086 4.086 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.051 0.949 38 H 0.370 0.630 39 H 0.268 0.732 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.138 0.862 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.373 -4.609 -10.655 21.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.138 4.138 3 C -0.103 4.103 4 C -0.191 4.191 5 C 0.060 3.940 6 O -0.236 6.236 7 C -0.004 4.004 8 C -0.087 4.087 9 N -0.239 5.239 10 C -0.086 4.086 11 C -0.150 4.150 12 C 0.195 3.805 13 O -0.403 6.403 14 C -0.598 4.598 15 H 0.073 0.927 16 C -0.173 4.173 17 N -0.550 5.550 18 Si 0.785 3.215 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.070 4.070 23 C -0.235 4.235 24 C -0.104 4.104 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.165 0.835 29 H 0.142 0.858 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.219 0.781 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.156 0.844 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.645 -3.872 -11.080 22.032 hybrid contribution 1.864 -1.048 1.048 2.382 sum -16.780 -4.920 -10.032 20.160 Atomic orbital electron populations 1.20741 0.89038 1.03481 1.02917 1.20203 0.97757 0.92737 1.03126 1.21117 0.92296 0.99100 0.97772 1.20667 0.94821 0.96393 1.07221 1.19400 0.82741 0.95113 0.96741 1.86187 1.16343 1.32778 1.88257 1.22886 0.91623 0.83715 1.02140 1.22424 0.93699 0.99357 0.93266 1.65463 1.17205 1.38165 1.03103 1.23068 0.99436 0.94161 0.91981 1.22639 0.96133 0.99530 0.96704 1.19525 0.92173 0.79105 0.89719 1.86156 1.96497 1.29067 1.28575 1.21940 1.02351 1.41405 0.94074 0.92663 1.25709 1.01387 0.94549 0.95637 1.69848 1.37611 1.47721 0.99826 0.85554 0.80052 0.78534 0.77325 1.20415 1.20611 1.19338 1.22957 0.87496 0.99575 0.96929 1.21464 0.96109 0.96982 1.08918 1.21154 0.92947 0.98840 0.97448 0.90503 0.90815 0.90937 0.83535 0.85823 0.89225 0.91912 0.89766 0.90793 0.93252 0.90707 0.94635 0.92986 0.78142 0.92291 0.91936 0.92887 0.84381 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.24 0.71 -0.54 16 2 C -0.14 -2.57 5.88 -19.85 -0.12 -2.69 16 3 C -0.09 -1.77 9.69 22.25 0.22 -1.55 16 4 C -0.17 -4.53 9.99 22.37 0.22 -4.30 16 5 C 0.11 2.96 6.69 22.51 0.15 3.11 16 6 O -0.32 -10.16 10.08 -92.38 -0.93 -11.09 16 7 C 0.07 1.83 4.88 71.98 0.35 2.18 16 8 C 0.04 1.19 5.21 86.30 0.45 1.64 16 9 N -0.51 -19.98 5.33 -880.67 -4.69 -24.67 16 10 C 0.04 1.59 5.73 86.45 0.50 2.08 16 11 C -0.11 -5.33 5.48 31.49 0.17 -5.16 16 12 C 0.23 12.07 1.05 -10.64 -0.01 12.06 16 13 O -0.60 -33.17 12.92 -148.98 -1.93 -35.09 16 14 C -0.56 -30.48 8.07 25.60 0.21 -30.27 16 15 H 0.06 2.96 7.57 -2.91 -0.02 2.94 16 16 C 0.03 1.49 5.09 84.65 0.43 1.92 16 17 N -0.91 -49.84 10.88 21.45 0.23 -49.61 16 18 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 C 0.06 2.57 5.78 86.39 0.50 3.07 16 23 C -0.22 -4.94 9.04 22.37 0.20 -4.74 16 24 C -0.09 -1.65 9.69 22.26 0.22 -1.44 16 25 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 27 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 28 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.09 1.73 7.65 -2.39 -0.02 1.71 16 31 H 0.06 1.57 6.58 -2.39 -0.02 1.56 16 32 H 0.08 2.41 8.13 -2.38 -0.02 2.39 16 33 H 0.07 1.88 7.88 -2.39 -0.02 1.86 16 34 H 0.05 1.73 7.82 -2.38 -0.02 1.71 16 35 H 0.07 2.68 7.63 -2.39 -0.02 2.66 16 36 H 0.03 1.78 7.96 -2.39 -0.02 1.76 16 37 H 0.05 2.65 7.23 -2.39 -0.02 2.64 16 38 H 0.37 20.80 7.48 -74.06 -0.55 20.25 16 39 H 0.27 13.96 8.31 -92.70 -0.77 13.18 16 40 H 0.06 2.86 8.08 -2.38 -0.02 2.84 16 41 H 0.05 2.22 7.56 -2.39 -0.02 2.20 16 42 H 0.14 2.66 6.30 -2.91 -0.02 2.64 16 43 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -63.75 347.02 -0.65 -64.39 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.45 Total: 36.11 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 4.20 Total: -24.63 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -4.46 Total: -74.28 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -2.86 Total: -46.18 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -63.75 -0.65 -64.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.642 kcal (2) G-P(sol) polarization free energy of solvation -63.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds