Wall clock time and date at job start Tue Mar 31 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38232 * 119.99873 * 2 1 4 4 C 1.38240 * 120.00006 * 180.02562 * 3 2 1 5 5 C 1.38241 * 119.99625 * 359.95046 * 4 3 2 6 6 C 1.50703 * 119.99675 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47083 * 340.00378 * 6 5 4 8 8 O 1.42899 * 109.47207 * 220.00294 * 6 5 4 9 9 C 1.53000 * 109.46801 * 100.00093 * 6 5 4 10 10 N 1.46901 * 109.46769 * 184.99750 * 9 6 5 11 11 C 1.47839 * 111.00094 * 290.84320 * 10 9 6 12 12 C 1.54910 * 104.79725 * 213.63685 * 11 10 9 13 13 C 1.55136 * 101.65131 * 37.07211 * 12 11 10 14 14 O 1.42896 * 110.85563 * 82.79879 * 13 12 11 15 15 C 1.50702 * 110.70586 * 205.96655 * 13 12 11 16 16 H 1.08001 * 120.00151 * 113.60227 * 15 13 12 17 17 C 1.37884 * 119.99676 * 293.59671 * 15 13 12 18 18 N 1.31506 * 120.00138 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99677 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47500 * 60.00419 * 19 17 15 21 21 H 1.48505 * 109.46764 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47566 * 299.99962 * 19 17 15 23 23 C 1.47445 * 110.99753 * 170.00198 * 10 9 6 24 24 C 1.38234 * 119.99965 * 0.27908 * 5 4 3 25 25 C 1.38229 * 119.99938 * 359.53536 * 24 5 4 26 26 H 1.08997 * 109.47246 * 90.00214 * 1 2 3 27 27 H 1.08997 * 109.47376 * 210.00671 * 1 2 3 28 28 H 1.09002 * 109.47174 * 330.00248 * 1 2 3 29 29 H 1.08001 * 120.00546 * 0.02562 * 3 2 1 30 30 H 1.07995 * 120.00019 * 179.97438 * 4 3 2 31 31 H 0.96702 * 113.99557 * 300.00556 * 8 6 5 32 32 H 1.09002 * 109.47398 * 305.00045 * 9 6 5 33 33 H 1.09001 * 109.47194 * 65.00225 * 9 6 5 34 34 H 1.08995 * 110.37551 * 332.46590 * 11 10 9 35 35 H 1.09005 * 110.37015 * 94.81188 * 11 10 9 36 36 H 1.08999 * 110.99109 * 278.98194 * 12 11 10 37 37 H 1.08998 * 111.02693 * 155.18053 * 12 11 10 38 38 H 0.96703 * 114.00197 * 66.32100 * 14 13 12 39 39 H 0.97001 * 120.00275 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.88966 * 242.66278 * 23 10 9 41 41 H 1.09002 * 109.88969 * 3.85061 * 23 10 9 42 42 H 1.08002 * 119.99452 * 179.72473 * 24 5 4 43 43 H 1.08001 * 119.99783 * 180.21105 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2716 -0.0001 0.0000 6 6 5.7787 0.0000 0.0000 7 1 6.1420 0.9656 -0.3519 8 8 6.2550 -1.0324 -0.8657 9 6 6.2886 -0.2499 1.4207 10 7 7.7527 -0.1314 1.4433 11 6 8.3861 -1.2486 0.7110 12 6 9.7068 -1.5226 1.4727 13 6 9.2747 -1.2869 2.9439 14 8 8.6497 -2.4530 3.4837 15 6 10.4552 -0.8786 3.7870 16 1 10.4984 0.1135 4.2114 17 6 11.4801 -1.7720 4.0167 18 7 11.4277 -2.9800 3.4996 19 14 12.9437 -1.2658 5.0612 20 1 12.4771 -0.8977 6.4221 21 1 13.8996 -2.3983 5.1558 22 1 13.6178 -0.0993 4.4367 23 6 8.2612 -0.1290 2.8273 24 6 3.5804 -1.1972 -0.0048 25 6 2.1981 -1.1971 -0.0004 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6582 2.1325 0.0004 30 1 4.1205 2.1324 -0.0010 31 1 5.9696 -1.9209 -0.6123 32 1 5.8540 0.4857 2.0974 33 1 6.0003 -1.2517 1.7393 34 1 7.7448 -2.1296 0.7343 35 1 8.5951 -0.9574 -0.3184 36 1 10.4825 -0.8168 1.1757 37 1 10.0387 -2.5500 1.3230 38 1 9.2440 -3.2101 3.5776 39 1 12.1489 -3.6083 3.6609 40 1 8.7554 0.8191 3.0391 41 1 7.4383 -0.2848 3.5250 42 1 4.1205 -2.1324 -0.0089 43 1 1.6581 -2.1324 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829975012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:11 Heat of formation + Delta-G solvation = -77.798715 kcal Electronic energy + Delta-G solvation = -23447.208077 eV Core-core repulsion = 20070.678511 eV Total energy + Delta-G solvation = -3376.529566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91924 -38.47122 -36.79560 -34.35108 -33.03605 -32.05383 -31.04461 -30.52391 -28.25156 -28.01303 -25.88207 -24.19925 -22.95316 -22.31958 -20.70177 -20.12041 -19.40934 -17.35691 -17.11001 -16.01355 -15.57041 -15.20466 -14.91792 -14.88784 -14.38206 -14.15936 -13.98681 -13.89019 -13.52737 -13.33381 -13.05512 -12.46172 -12.36786 -12.05141 -11.90711 -11.79664 -11.62553 -11.36147 -11.22064 -11.12137 -10.88858 -10.80272 -10.55646 -10.45620 -10.34129 -9.95340 -9.59882 -9.23501 -9.03105 -8.61819 -8.56991 -8.05903 -7.61055 -6.19344 -4.26178 1.18990 1.29691 3.25720 3.30206 3.33393 3.59742 4.31230 4.41553 4.59045 4.66751 4.72239 4.88857 5.01845 5.07393 5.10292 5.27543 5.34537 5.39039 5.45957 5.55952 5.57785 5.75529 5.86532 5.93778 5.94679 6.12159 6.20862 6.24168 6.29087 6.36302 6.45255 6.47541 6.56981 6.68935 6.88736 6.97883 7.16286 7.46720 7.52616 7.70786 7.72404 7.81916 7.85987 8.16927 8.74697 9.41383 9.53899 10.87922 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037399 B = 0.003130 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.497155 B = 8943.738627 C = 9003.622734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.113 4.113 6 C 0.153 3.847 7 H 0.112 0.888 8 O -0.548 6.548 9 C 0.028 3.972 10 N -0.526 5.526 11 C 0.054 3.946 12 C -0.135 4.135 13 C 0.236 3.764 14 O -0.593 6.593 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.057 3.943 24 C -0.107 4.107 25 C -0.118 4.118 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.368 0.632 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.383 0.617 39 H 0.267 0.733 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.120 0.880 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.258 4.044 -7.576 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.123 4.123 5 C -0.114 4.114 6 C 0.093 3.907 7 H 0.130 0.870 8 O -0.353 6.353 9 C -0.101 4.101 10 N -0.250 5.250 11 C -0.073 4.073 12 C -0.174 4.174 13 C 0.196 3.804 14 O -0.404 6.404 15 C -0.570 4.570 16 H 0.079 0.921 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.071 4.071 24 C -0.125 4.125 25 C -0.136 4.136 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.216 0.784 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.138 0.862 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.278 5.250 -8.117 19.799 hybrid contribution 0.834 -1.376 1.310 2.075 sum -16.444 3.873 -6.807 18.214 Atomic orbital electron populations 1.20778 0.91342 1.02697 1.02180 1.19918 0.95996 0.93292 1.00086 1.21007 0.94120 0.97468 1.01224 1.21015 0.94119 0.97614 0.99567 1.20662 0.96950 0.93666 1.00083 1.20876 0.86717 0.92802 0.90273 0.87015 1.86669 1.76399 1.17874 1.54384 1.22875 0.90801 1.00463 0.95954 1.63642 1.03123 1.44145 1.14132 1.23042 0.95988 0.90730 0.97566 1.23210 0.94836 1.01591 0.97751 1.19701 0.88787 0.82418 0.89500 1.86061 1.42797 1.24893 1.86612 1.21589 1.03769 0.99712 1.31939 0.92053 1.25009 0.98195 0.94880 0.95168 1.69579 1.34042 1.05569 1.44828 0.86511 0.81770 0.78122 0.80740 1.20153 1.21193 1.20081 1.22856 0.97547 0.99492 0.87163 1.20896 0.94243 0.97605 0.99778 1.20977 0.94030 0.97525 1.01097 0.91304 0.91616 0.91628 0.86124 0.85752 0.78436 0.90713 0.94479 0.94974 0.91252 0.91946 0.91059 0.76515 0.92261 0.90299 0.93748 0.86231 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.11 -1.19 9.67 -39.58 -0.38 -1.57 16 5 C -0.11 -1.40 4.97 -104.62 -0.52 -1.92 16 6 C 0.15 2.13 3.40 -27.88 -0.09 2.04 16 7 H 0.11 1.59 8.00 -51.93 -0.42 1.18 16 8 O -0.55 -7.95 10.67 -35.23 -0.38 -8.33 16 9 C 0.03 0.46 4.36 -3.82 -0.02 0.44 16 10 N -0.53 -10.27 5.16 -231.25 -1.19 -11.46 16 11 C 0.05 1.09 5.06 -2.30 -0.01 1.08 16 12 C -0.14 -3.19 5.67 -24.59 -0.14 -3.33 16 13 C 0.24 5.94 0.85 -89.95 -0.08 5.86 16 14 O -0.59 -15.62 13.09 -35.23 -0.46 -16.09 16 15 C -0.53 -14.42 8.21 -34.44 -0.28 -14.70 16 16 H 0.06 1.65 7.53 -52.49 -0.40 1.25 16 17 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 18 N -0.90 -24.25 10.69 55.43 0.59 -23.66 16 19 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.06 1.26 6.22 -2.83 -0.02 1.24 16 24 C -0.11 -1.24 9.32 -39.59 -0.37 -1.61 16 25 C -0.12 -1.24 9.70 -39.59 -0.38 -1.63 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.06 0.41 8.09 -51.93 -0.42 0.00 16 29 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.12 1.23 8.04 -52.49 -0.42 0.81 16 31 H 0.37 4.46 7.15 45.56 0.33 4.78 16 32 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 33 H 0.04 0.64 7.85 -51.93 -0.41 0.23 16 34 H 0.03 0.63 6.97 -51.93 -0.36 0.27 16 35 H 0.07 1.35 7.60 -51.93 -0.39 0.96 16 36 H 0.06 1.52 8.04 -51.93 -0.42 1.11 16 37 H 0.07 1.77 7.76 -51.93 -0.40 1.37 16 38 H 0.38 10.31 6.98 45.56 0.32 10.63 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.08 1.74 7.63 -51.93 -0.40 1.35 16 41 H 0.04 0.98 7.47 -51.93 -0.39 0.59 16 42 H 0.12 1.24 6.78 -52.49 -0.36 0.88 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -28.96 343.36 -9.69 -38.65 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -5.37 Total: 15.84 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.03 Total: -15.96 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.60 Total: -35.12 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.84 Total: -24.41 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.96 -9.69 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829975012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.149 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds