Wall clock time and date at job start Tue Mar 31 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38232 * 119.99873 * 2 1 4 4 C 1.38240 * 120.00006 * 180.02562 * 3 2 1 5 5 C 1.38241 * 119.99625 * 359.95046 * 4 3 2 6 6 C 1.50703 * 119.99675 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47083 * 340.00378 * 6 5 4 8 8 O 1.42899 * 109.47207 * 220.00294 * 6 5 4 9 9 C 1.53000 * 109.46801 * 100.00093 * 6 5 4 10 10 N 1.46901 * 109.46769 * 184.99750 * 9 6 5 11 11 C 1.47839 * 111.00094 * 290.84320 * 10 9 6 12 12 C 1.54910 * 104.79725 * 213.63685 * 11 10 9 13 13 C 1.55136 * 101.65131 * 37.07211 * 12 11 10 14 14 O 1.42896 * 110.85563 * 82.79879 * 13 12 11 15 15 C 1.50702 * 110.70586 * 205.96655 * 13 12 11 16 16 H 1.08001 * 120.00151 * 113.60227 * 15 13 12 17 17 C 1.37884 * 119.99676 * 293.59671 * 15 13 12 18 18 N 1.31506 * 120.00138 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99677 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47500 * 60.00419 * 19 17 15 21 21 H 1.48505 * 109.46764 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47566 * 299.99962 * 19 17 15 23 23 C 1.47445 * 110.99753 * 170.00198 * 10 9 6 24 24 C 1.38234 * 119.99965 * 0.27908 * 5 4 3 25 25 C 1.38229 * 119.99938 * 359.53536 * 24 5 4 26 26 H 1.08997 * 109.47246 * 90.00214 * 1 2 3 27 27 H 1.08997 * 109.47376 * 210.00671 * 1 2 3 28 28 H 1.09002 * 109.47174 * 330.00248 * 1 2 3 29 29 H 1.08001 * 120.00546 * 0.02562 * 3 2 1 30 30 H 1.07995 * 120.00019 * 179.97438 * 4 3 2 31 31 H 0.96702 * 113.99557 * 300.00556 * 8 6 5 32 32 H 1.09002 * 109.47398 * 305.00045 * 9 6 5 33 33 H 1.09001 * 109.47194 * 65.00225 * 9 6 5 34 34 H 1.08995 * 110.37551 * 332.46590 * 11 10 9 35 35 H 1.09005 * 110.37015 * 94.81188 * 11 10 9 36 36 H 1.08999 * 110.99109 * 278.98194 * 12 11 10 37 37 H 1.08998 * 111.02693 * 155.18053 * 12 11 10 38 38 H 0.96703 * 114.00197 * 66.32100 * 14 13 12 39 39 H 0.97001 * 120.00275 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.88966 * 242.66278 * 23 10 9 41 41 H 1.09002 * 109.88969 * 3.85061 * 23 10 9 42 42 H 1.08002 * 119.99452 * 179.72473 * 24 5 4 43 43 H 1.08001 * 119.99783 * 180.21105 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2716 -0.0001 0.0000 6 6 5.7787 0.0000 0.0000 7 1 6.1420 0.9656 -0.3519 8 8 6.2550 -1.0324 -0.8657 9 6 6.2886 -0.2499 1.4207 10 7 7.7527 -0.1314 1.4433 11 6 8.3861 -1.2486 0.7110 12 6 9.7068 -1.5226 1.4727 13 6 9.2747 -1.2869 2.9439 14 8 8.6497 -2.4530 3.4837 15 6 10.4552 -0.8786 3.7870 16 1 10.4984 0.1135 4.2114 17 6 11.4801 -1.7720 4.0167 18 7 11.4277 -2.9800 3.4996 19 14 12.9437 -1.2658 5.0612 20 1 12.4771 -0.8977 6.4221 21 1 13.8996 -2.3983 5.1558 22 1 13.6178 -0.0993 4.4367 23 6 8.2612 -0.1290 2.8273 24 6 3.5804 -1.1972 -0.0048 25 6 2.1981 -1.1971 -0.0004 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6582 2.1325 0.0004 30 1 4.1205 2.1324 -0.0010 31 1 5.9696 -1.9209 -0.6123 32 1 5.8540 0.4857 2.0974 33 1 6.0003 -1.2517 1.7393 34 1 7.7448 -2.1296 0.7343 35 1 8.5951 -0.9574 -0.3184 36 1 10.4825 -0.8168 1.1757 37 1 10.0387 -2.5500 1.3230 38 1 9.2440 -3.2101 3.5776 39 1 12.1489 -3.6083 3.6609 40 1 8.7554 0.8191 3.0391 41 1 7.4383 -0.2848 3.5250 42 1 4.1205 -2.1324 -0.0089 43 1 1.6581 -2.1324 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829975012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:10 Heat of formation + Delta-G solvation = -98.133826 kcal Electronic energy + Delta-G solvation = -23448.089874 eV Core-core repulsion = 20070.678511 eV Total energy + Delta-G solvation = -3377.411363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.93694 -39.96124 -38.08098 -36.11550 -34.12982 -33.89307 -32.07239 -31.80173 -29.87401 -29.43556 -27.20720 -25.84966 -23.90909 -23.38926 -21.91735 -21.52568 -21.26221 -19.14776 -18.38677 -17.13961 -16.92797 -16.84042 -16.28419 -16.11339 -15.79910 -15.62845 -15.37472 -14.76586 -14.70883 -14.39948 -14.28258 -13.85462 -13.75125 -13.41676 -13.18400 -13.11719 -13.03753 -12.91479 -12.72213 -12.49469 -12.35409 -12.33139 -12.12276 -11.97009 -11.86967 -11.74035 -11.19107 -10.87035 -10.61557 -10.08129 -9.83936 -9.43818 -9.23252 -8.22564 -6.37356 0.35942 0.49044 1.41763 1.42040 1.50192 2.38160 2.74658 3.01011 3.08855 3.52755 3.77981 3.88561 3.91431 4.00041 4.12079 4.14890 4.16966 4.37321 4.41941 4.46855 4.55270 4.58225 4.62503 4.69678 4.83493 4.84939 4.91936 4.94009 4.98332 5.12358 5.19676 5.27639 5.34772 5.48461 5.48662 5.55040 5.67061 5.69641 5.80240 5.96316 6.10497 6.18277 6.23855 6.66616 6.70830 7.33099 7.42780 8.82784 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037399 B = 0.003130 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.497155 B = 8943.738627 C = 9003.622734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.130 4.130 6 C 0.166 3.834 7 H 0.109 0.891 8 O -0.560 6.560 9 C 0.032 3.968 10 N -0.525 5.525 11 C 0.070 3.930 12 C -0.130 4.130 13 C 0.221 3.779 14 O -0.599 6.599 15 C -0.559 4.559 16 H 0.056 0.944 17 C 0.027 3.973 18 N -0.915 5.915 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.272 1.272 23 C 0.064 3.936 24 C -0.119 4.119 25 C -0.128 4.128 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.377 0.623 32 H 0.081 0.919 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.377 0.623 39 H 0.270 0.730 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.125 0.875 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.656 4.700 -7.889 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.131 4.131 6 C 0.106 3.894 7 H 0.127 0.873 8 O -0.367 6.367 9 C -0.097 4.097 10 N -0.249 5.249 11 C -0.057 4.057 12 C -0.169 4.169 13 C 0.181 3.819 14 O -0.409 6.409 15 C -0.598 4.598 16 H 0.074 0.926 17 C -0.173 4.173 18 N -0.556 5.556 19 Si 0.787 3.213 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.064 4.064 24 C -0.137 4.137 25 C -0.146 4.146 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.227 0.773 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.228 0.772 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.143 0.857 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.695 5.906 -8.439 21.345 hybrid contribution 1.201 -1.597 1.401 2.441 sum -17.494 4.309 -7.038 19.343 Atomic orbital electron populations 1.20834 0.89296 1.03646 1.03110 1.20324 0.97619 0.93009 0.98641 1.21315 0.93827 0.98645 1.00665 1.21234 0.94916 0.97669 0.99457 1.20525 0.95799 0.94589 1.02148 1.20668 0.87934 0.92457 0.88320 0.87326 1.86630 1.76790 1.18667 1.54603 1.22947 0.88488 1.00204 0.98064 1.63650 1.05200 1.43706 1.12295 1.22888 0.94174 0.91174 0.97510 1.23044 0.96168 0.99988 0.97673 1.19938 0.89375 0.82727 0.89851 1.86054 1.42827 1.25093 1.86903 1.21878 1.05083 0.99830 1.32976 0.92581 1.25720 1.00499 0.94918 0.96132 1.69664 1.34623 1.06088 1.45175 0.85558 0.78725 0.77906 0.79097 1.19936 1.20560 1.19704 1.22720 0.96837 0.98142 0.88718 1.21080 0.95029 0.97649 0.99990 1.21260 0.93759 0.98711 1.00895 0.90260 0.90843 0.90579 0.83970 0.84776 0.77345 0.90041 0.95309 0.94537 0.90183 0.93339 0.92892 0.77214 0.92087 0.90519 0.93949 0.85686 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 71.23 0.71 -0.59 16 2 C -0.10 -1.70 5.88 -19.87 -0.12 -1.82 16 3 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 4 C -0.11 -2.42 9.67 22.27 0.22 -2.21 16 5 C -0.13 -3.08 4.97 -19.86 -0.10 -3.18 16 6 C 0.17 4.46 3.40 29.85 0.10 4.56 16 7 H 0.11 2.99 8.00 -2.39 -0.02 2.97 16 8 O -0.56 -15.69 10.67 -148.98 -1.59 -17.28 16 9 C 0.03 1.01 4.36 86.30 0.38 1.38 16 10 N -0.52 -20.20 5.16 -885.53 -4.57 -24.77 16 11 C 0.07 2.79 5.06 86.78 0.44 3.23 16 12 C -0.13 -6.22 5.67 31.98 0.18 -6.04 16 13 C 0.22 11.26 0.85 -10.36 -0.01 11.26 16 14 O -0.60 -32.03 13.09 -148.98 -1.95 -33.98 16 15 C -0.56 -30.69 8.21 25.60 0.21 -30.48 16 16 H 0.06 3.05 7.53 -2.91 -0.02 3.03 16 17 C 0.03 1.46 5.28 84.66 0.45 1.91 16 18 N -0.92 -49.74 10.69 21.45 0.23 -49.51 16 19 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 C 0.06 2.83 6.22 86.65 0.54 3.36 16 24 C -0.12 -2.63 9.32 22.27 0.21 -2.42 16 25 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 26 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 28 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.13 2.45 8.04 -2.91 -0.02 2.43 16 31 H 0.38 8.81 7.15 -74.06 -0.53 8.28 16 32 H 0.08 2.48 8.03 -2.39 -0.02 2.46 16 33 H 0.03 0.97 7.85 -2.39 -0.02 0.95 16 34 H 0.04 1.42 6.97 -2.39 -0.02 1.41 16 35 H 0.08 3.05 7.60 -2.38 -0.02 3.03 16 36 H 0.05 2.41 8.04 -2.39 -0.02 2.39 16 37 H 0.05 2.69 7.76 -2.39 -0.02 2.67 16 38 H 0.38 20.75 6.98 -74.06 -0.52 20.24 16 39 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.08 3.41 7.63 -2.39 -0.02 3.39 16 41 H 0.04 1.87 7.47 -2.39 -0.02 1.85 16 42 H 0.13 2.48 6.78 -2.91 -0.02 2.46 16 43 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -60.93 343.36 -2.25 -63.17 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -0.03 Total: 42.99 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 3.64 Total: -25.38 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -4.34 Total: -74.29 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -3.54 Total: -51.26 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -60.93 -2.25 -63.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829975012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.960 kcal (2) G-P(sol) polarization free energy of solvation -60.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds