Wall clock time and date at job start Tue Mar 31 2020 07:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38357 * 119.45299 * 2 1 4 4 C 1.38340 * 119.30503 * 179.97438 * 3 2 1 5 5 C 1.40077 * 118.28978 * 359.97438 * 4 3 2 6 6 C 1.47716 * 120.56952 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99996 * 176.14492 * 6 5 4 8 8 O 1.34710 * 119.99798 * 355.87033 * 6 5 4 9 9 C 1.45201 * 116.99896 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47138 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47152 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47316 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99906 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00451 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99663 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47178 * 60.00436 * 16 14 12 18 18 H 1.48504 * 109.46918 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47388 * 300.00176 * 16 14 12 20 20 C 1.39575 * 118.86692 * 0.27233 * 5 4 3 21 21 C 1.50698 * 119.72079 * 179.72329 * 20 5 4 22 22 C 1.53002 * 109.47068 * 157.02660 * 21 20 5 23 23 C 1.52999 * 109.47323 * 277.02499 * 21 20 5 24 24 N 1.31694 * 120.55712 * 359.45515 * 20 5 4 25 25 H 1.08996 * 109.47003 * 90.00300 * 1 2 3 26 26 H 1.09001 * 109.47264 * 210.00565 * 1 2 3 27 27 H 1.08998 * 109.46847 * 329.99782 * 1 2 3 28 28 H 1.07998 * 120.34748 * 359.97438 * 3 2 1 29 29 H 1.08007 * 120.85791 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46864 * 299.99423 * 9 8 6 31 31 H 1.09000 * 109.47611 * 60.00015 * 9 8 6 32 32 H 1.09005 * 109.47204 * 299.99658 * 10 9 8 33 33 H 1.09001 * 109.47542 * 59.99833 * 10 9 8 34 34 H 1.08992 * 109.47286 * 299.99877 * 11 10 9 35 35 H 1.09000 * 109.47340 * 60.00179 * 11 10 9 36 36 H 0.96996 * 119.99564 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.47147 * 37.02791 * 21 20 5 38 38 H 1.08995 * 109.47311 * 59.99702 * 22 21 20 39 39 H 1.08997 * 109.46845 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.46729 * 300.00099 * 22 21 20 41 41 H 1.09005 * 109.46852 * 60.00010 * 23 21 20 42 42 H 1.09006 * 109.46856 * 179.97438 * 23 21 20 43 43 H 1.09001 * 109.47247 * 300.00231 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2048 0.0000 4 6 3.5708 1.2012 0.0005 5 6 4.2314 -0.0340 0.0016 6 6 5.7073 -0.0966 0.0028 7 8 6.2696 -1.1709 0.0745 8 8 6.4295 1.0375 -0.0812 9 6 7.8750 0.9003 -0.0751 10 6 8.5191 2.2843 -0.1776 11 6 10.0422 2.1399 -0.1705 12 6 10.6767 3.5030 -0.2721 13 1 10.0556 4.3844 -0.3350 14 6 12.0499 3.6253 -0.2838 15 7 12.8062 2.5521 -0.2067 16 14 12.8362 5.3150 -0.4104 17 1 12.4119 6.1462 0.7447 18 1 14.3146 5.1747 -0.4034 19 1 12.4073 5.9671 -1.6736 20 6 3.4715 -1.2047 -0.0037 21 6 4.1624 -2.5439 -0.0090 22 6 3.2156 -3.6084 0.5491 23 6 4.5537 -2.9103 -1.4420 24 7 2.1557 -1.1488 0.0011 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6441 2.1382 -0.0004 29 1 4.1271 2.1269 0.0001 30 1 8.1905 0.4201 0.8512 31 1 8.1859 0.2916 -0.9241 32 1 8.2036 2.7642 -1.1041 33 1 8.2084 2.8935 0.6712 34 1 10.3574 1.6602 0.7561 35 1 10.3534 1.5306 -1.0191 36 1 13.7723 2.6381 -0.2145 37 1 5.0577 -2.4933 0.6106 38 1 2.3202 -3.6591 -0.0704 39 1 3.7155 -4.5770 0.5457 40 1 2.9368 -3.3474 1.5700 41 1 5.2283 -2.1519 -1.8395 42 1 5.0539 -3.8788 -1.4456 43 1 3.6584 -2.9609 -2.0615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835159614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:36 Heat of formation + Delta-G solvation = -78.323507 kcal Electronic energy + Delta-G solvation = -22645.310026 eV Core-core repulsion = 19268.757703 eV Total energy + Delta-G solvation = -3376.552323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17596 -39.67596 -36.81631 -35.44834 -34.06001 -33.35956 -31.68554 -31.65367 -28.60549 -27.20668 -26.96421 -24.61917 -23.52592 -22.86786 -21.05800 -20.63674 -20.32164 -17.80879 -17.08725 -16.42761 -16.38763 -16.00612 -15.89777 -15.03521 -14.50330 -14.48880 -14.32362 -14.05445 -13.80953 -13.31777 -13.02659 -12.80103 -12.57652 -12.46817 -12.21026 -12.18258 -12.07749 -11.90097 -11.44331 -11.25517 -11.15759 -10.96291 -10.67211 -10.65567 -10.41046 -10.18896 -10.03892 -9.75484 -9.72742 -9.46633 -9.19772 -9.12620 -8.40354 -6.05272 -4.08548 0.32481 0.95548 2.50137 2.76235 3.31001 3.35503 3.37874 3.49640 3.82533 4.30252 4.41203 4.43878 4.56609 4.75013 5.00276 5.10160 5.12802 5.17070 5.21151 5.24779 5.30636 5.54347 5.54891 5.57977 5.62968 5.63342 5.72311 5.74183 5.81925 5.94810 5.98140 6.02134 6.18368 6.27023 6.35040 6.50422 6.54731 6.81598 6.95038 7.57656 7.65094 7.68762 7.85474 7.92813 8.33633 8.97429 9.55796 11.06155 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026087 B = 0.002796 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.057728 B =10011.327576 C =10919.725029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.158 3.842 3 C -0.194 4.194 4 C -0.012 4.012 5 C -0.184 4.184 6 C 0.508 3.492 7 O -0.497 6.497 8 O -0.354 6.354 9 C 0.070 3.930 10 C -0.109 4.109 11 C 0.025 3.975 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.207 3.793 21 C -0.065 4.065 22 C -0.134 4.134 23 C -0.129 4.129 24 N -0.486 5.486 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.142 0.858 29 H 0.152 0.848 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.740 -7.188 0.238 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.020 3.980 3 C -0.214 4.214 4 C -0.037 4.037 5 C -0.187 4.187 6 C 0.353 3.647 7 O -0.387 6.387 8 O -0.270 6.270 9 C -0.003 4.003 10 C -0.147 4.147 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.069 3.931 21 C -0.084 4.084 22 C -0.192 4.192 23 C -0.187 4.187 24 N -0.196 5.196 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.160 0.840 29 H 0.170 0.830 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.139 0.861 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.820 -8.305 0.263 26.174 hybrid contribution 1.161 1.771 -0.069 2.118 sum -23.660 -6.534 0.195 24.546 Atomic orbital electron populations 1.20794 0.88382 1.03831 1.03444 1.21613 0.97336 0.88339 0.90683 1.21950 0.94506 0.99596 1.05374 1.21990 0.94443 0.97970 0.89329 1.20045 0.91271 0.95418 1.11991 1.20815 0.87863 0.82699 0.73368 1.90749 1.72694 1.29581 1.45683 1.86531 1.23235 1.34340 1.82938 1.23550 0.73004 1.01421 1.02335 1.21775 0.98780 0.92213 1.01897 1.19042 0.86759 0.97736 0.97710 1.21128 0.91444 0.92634 1.50902 0.92497 1.25027 0.97432 0.96800 0.95174 1.69955 1.04856 1.28252 1.50274 0.86604 0.78102 0.84291 0.78698 1.20174 1.21238 1.20177 1.21500 0.88625 0.94641 0.88345 1.20639 0.99151 0.88804 0.99778 1.21696 0.99309 0.97308 1.00839 1.21650 1.00831 1.01986 0.94246 1.67502 1.08532 1.28698 1.14852 0.89918 0.90140 0.90324 0.83982 0.82994 0.91316 0.91312 0.92138 0.92145 0.96206 0.96208 0.92804 0.86064 0.91848 0.92658 0.93072 0.92474 0.91662 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.16 36.01 0.37 -0.28 16 2 C 0.16 1.51 6.78 -82.51 -0.56 0.95 16 3 C -0.19 -1.74 9.72 -39.50 -0.38 -2.12 16 4 C -0.01 -0.13 9.74 -38.85 -0.38 -0.51 16 5 C -0.18 -2.45 5.89 -104.84 -0.62 -3.07 16 6 C 0.51 7.93 7.69 34.60 0.27 8.20 16 7 O -0.50 -8.41 11.89 -19.24 -0.23 -8.64 16 8 O -0.35 -5.84 9.56 -40.52 -0.39 -6.23 16 9 C 0.07 1.26 5.48 37.16 0.20 1.47 16 10 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 11 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 13 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 16 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.21 2.66 5.85 -82.15 -0.48 2.18 16 21 C -0.07 -0.80 2.37 -91.77 -0.22 -1.02 16 22 C -0.13 -1.39 8.64 37.16 0.32 -1.07 16 23 C -0.13 -1.52 8.80 37.16 0.33 -1.19 16 24 N -0.49 -5.71 9.00 -5.40 -0.05 -5.76 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 28 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.15 1.50 7.71 -52.48 -0.40 1.09 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.12 1.69 5.58 -51.93 -0.29 1.40 16 38 H 0.06 0.65 7.79 -51.93 -0.40 0.25 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.76 7.05 -51.93 -0.37 0.39 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -31.09 358.79 -8.31 -39.41 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.92 Total: -2.87 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.85 Total: -11.75 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.69 Total: -31.75 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.62 Total: -14.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.09 -8.31 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.916 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds